RNA–Protein interactions for RNA: ENST00000509357.5

PDLIM5-213, Transcript of PDZ and LIM domain 5, humanhuman

TSL 5

Gene PDLIM5, Length 554 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-213ENST00000509357 SLIT3O75094 1523 aa12.16□□□□□ -0.46
PDLIM5-213ENST00000509357 EP400Q96L91 3159 aa12.15□□□□□ -0.46
PDLIM5-213ENST00000509357 NRAPQ86VF7 1730 aa12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 BLMP54132 1417 aaPredicted RBP12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 CAMTA1Q9Y6Y1 1673 aa12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 BARGINQ6ZT62 677 aa12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 ARHGEF25Q86VW2 580 aa12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 POLR3GLQ9BT43 218 aa12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 NFAT5O94916 1531 aa12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 COL18A1P39060 1754 aa12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 NINLQ9Y2I6 1382 aa12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 ANKRD26Q9UPS8 1709 aa12.14□□□□□ -0.47
PDLIM5-213ENST00000509357 OVOS2A0A0J9YW53 1432 aa12.13□□□□□ -0.47
PDLIM5-213ENST00000509357 OVOS2Q6IE36 1432 aa12.13□□□□□ -0.47
PDLIM5-213ENST00000509357 EDC4Q6P2E9 1401 aaKnown RBP12.13□□□□□ -0.47
PDLIM5-213ENST00000509357 AXIN2Q9Y2T1 843 aa12.13□□□□□ -0.47
PDLIM5-213ENST00000509357 THRAP3Q9Y2W1 955 aaKnown RBP12.13□□□□□ -0.47
PDLIM5-213ENST00000509357 RGPD5Q99666 1765 aa12.13□□□□□ -0.47
PDLIM5-213ENST00000509357 NSD3Q9BZ95 1437 aa12.12□□□□□ -0.47
PDLIM5-213ENST00000509357 FAM196AQ6ZSG2 479 aa12.12□□□□□ -0.47
PDLIM5-213ENST00000509357 DEFB132Q7Z7B7 95 aa12.12□□□□□ -0.47
PDLIM5-213ENST00000509357 COG3Q96JB2 828 aa12.12□□□□□ -0.47
PDLIM5-213ENST00000509357 LMO7Q8WWI1 1683 aa12.12□□□□□ -0.47
PDLIM5-213ENST00000509357 LTN1O94822 1766 aa12.11□□□□□ -0.47
PDLIM5-213ENST00000509357 COL5A2P05997 1499 aaPredicted RBP12.11□□□□□ -0.47
PDLIM5-213ENST00000509357 USP31Q70CQ4 1352 aa12.11□□□□□ -0.47
PDLIM5-213ENST00000509357 ZEB1P37275 1124 aaPredicted RBP12.11□□□□□ -0.47
PDLIM5-213ENST00000509357 BAG6P46379 1132 aa12.11□□□□□ -0.47
PDLIM5-213ENST00000509357 CRB1P82279 1406 aa12.11□□□□□ -0.47
PDLIM5-213ENST00000509357 WDR17Q8IZU2 1322 aa12.11□□□□□ -0.47
PDLIM5-213ENST00000509357 PEAK1Q9H792 1746 aa12.1□□□□□ -0.47
PDLIM5-213ENST00000509357 BRWD3Q6RI45 1802 aa12.09□□□□□ -0.47
PDLIM5-213ENST00000509357 TRIM37O94972 964 aa12.09□□□□□ -0.47
PDLIM5-213ENST00000509357 FBLN1P23142 703 aa12.09□□□□□ -0.47
PDLIM5-213ENST00000509357 DDB1Q16531 1140 aa12.09□□□□□ -0.47
PDLIM5-213ENST00000509357 PANK3Q9H999 370 aa12.09□□□□□ -0.47
PDLIM5-213ENST00000509357 NLRP2Q9NX02 1062 aa12.09□□□□□ -0.47
PDLIM5-213ENST00000509357 PER1O15534 1290 aaPredicted RBP12.08□□□□□ -0.48
PDLIM5-213ENST00000509357 CDCA7Q9BWT1 371 aaPredicted RBP12.08□□□□□ -0.48
PDLIM5-213ENST00000509357 CARD10Q9BWT7 1032 aa12.08□□□□□ -0.48
PDLIM5-213ENST00000509357 FYB1O15117 783 aa12.07□□□□□ -0.48
PDLIM5-213ENST00000509357 AMPHP49418 695 aa12.07□□□□□ -0.48
PDLIM5-213ENST00000509357 EN1Q05925 392 aaPredicted RBP12.07□□□□□ -0.48
PDLIM5-213ENST00000509357 LTV1Q96GA3 475 aaPredicted RBP12.07□□□□□ -0.48
PDLIM5-213ENST00000509357 GGNBP2Q9H3C7 697 aa12.07□□□□□ -0.48
PDLIM5-213ENST00000509357 APBA3O96018 575 aa12.06□□□□□ -0.48
PDLIM5-213ENST00000509357 ANKRD24Q8TF21 1146 aa12.06□□□□□ -0.48
PDLIM5-213ENST00000509357 THSD7AQ9UPZ6 1657 aa12.06□□□□□ -0.48
PDLIM5-213ENST00000509357 EXOC5O00471 708 aa12.05□□□□□ -0.48
PDLIM5-213ENST00000509357 RGPD2P0DJD1 1756 aa12.05□□□□□ -0.48
PDLIM5-213ENST00000509357 MAP2P11137 1827 aaKnown RBP12.04□□□□□ -0.48
PDLIM5-213ENST00000509357 AMER1Q5JTC6 1135 aaPredicted RBP12.04□□□□□ -0.48
PDLIM5-213ENST00000509357 IP6K1Q92551 441 aa12.04□□□□□ -0.48
PDLIM5-213ENST00000509357 ERBB3P21860 1342 aa12.04□□□□□ -0.48
PDLIM5-213ENST00000509357 MAP3K19Q56UN5 1328 aa12.03□□□□□ -0.48
PDLIM5-213ENST00000509357 HOXC9P31274 260 aa12.02□□□□□ -0.49
PDLIM5-213ENST00000509357 RRS1Q15050 365 aaKnown RBP12.02□□□□□ -0.49
PDLIM5-213ENST00000509357 EZH2Q15910 746 aaKnown RBP12.02□□□□□ -0.49
PDLIM5-213ENST00000509357 IL2RBP14784 551 aa12.01□□□□□ -0.49
PDLIM5-213ENST00000509357 MARCH10Q8NA82 808 aaPredicted RBP12.01□□□□□ -0.49
PDLIM5-213ENST00000509357 OVOS2A0A0G2JMS6 1433 aa12.01□□□□□ -0.49
PDLIM5-213ENST00000509357 ABCC6O95255 1503 aa12.01□□□□□ -0.49
PDLIM5-213ENST00000509357 WNK3Q9BYP7 1800 aa12□□□□□ -0.49
PDLIM5-213ENST00000509357 PSDA5PKW4 1024 aaPredicted RBP12□□□□□ -0.49
PDLIM5-213ENST00000509357 PPM1GO15355 546 aaPredicted RBP12□□□□□ -0.49
PDLIM5-213ENST00000509357 CGNL1Q0VF96 1302 aa12□□□□□ -0.49
PDLIM5-213ENST00000509357 CAMKK2Q96RR4 588 aa11.99□□□□□ -0.49
PDLIM5-213ENST00000509357 FAM208AQ9UK61 1670 aaKnown RBP11.99□□□□□ -0.49
PDLIM5-213ENST00000509357 R3HDM1Q15032 1099 aaKnown RBP11.98□□□□□ -0.49
PDLIM5-213ENST00000509357 NBPF14Q5TI25 921 aa11.98□□□□□ -0.49
PDLIM5-213ENST00000509357 BCL11BQ9C0K0 894 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-213ENST00000509357 SRCAPQ6ZRS2 3230 aa11.98□□□□□ -0.49
PDLIM5-213ENST00000509357 RGPD1P0DJD0 1748 aa11.97□□□□□ -0.49
PDLIM5-213ENST00000509357 SMG6Q86US8 1419 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-213ENST00000509357 TNNT2P45379 298 aaPredicted RBP11.97□□□□□ -0.49
PDLIM5-213ENST00000509357 DDX10Q13206 875 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-213ENST00000509357 DDX54Q8TDD1 881 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-213ENST00000509357 PARP4Q9UKK3 1724 aaKnown RBP11.97□□□□□ -0.49
PDLIM5-213ENST00000509357 DISP2A7MBM2 1401 aa11.96□□□□□ -0.49
PDLIM5-213ENST00000509357 RTL1A6NKG5 1358 aa11.96□□□□□ -0.49
PDLIM5-213ENST00000509357 PARD3Q8TEW0 1356 aa11.96□□□□□ -0.49
PDLIM5-213ENST00000509357 HSP90AB2PQ58FF8 381 aa11.96□□□□□ -0.49
PDLIM5-213ENST00000509357 ACSBG1Q96GR2 724 aa11.96□□□□□ -0.49
PDLIM5-213ENST00000509357 EMILIN1Q9Y6C2 1016 aa11.96□□□□□ -0.49
PDLIM5-213ENST00000509357 NPC1L1Q9UHC9 1359 aa11.95□□□□□ -0.5
PDLIM5-213ENST00000509357 ZNF316A6NFI3 1004 aaPredicted RBP11.95□□□□□ -0.5
PDLIM5-213ENST00000509357 CC2D1BQ5T0F9 858 aaKnown RBP11.95□□□□□ -0.5
PDLIM5-213ENST00000509357 USHBP1Q8N6Y0 703 aa11.95□□□□□ -0.5
PDLIM5-213ENST00000509357 RAPGEF4Q8WZA2 1011 aa11.95□□□□□ -0.5
PDLIM5-213ENST00000509357 TNS2Q63HR2 1409 aa11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 NSD2O96028 1365 aa11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 FLT4P35916 1363 aa11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 LRRC37A3O60309 1634 aa11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 NBPF6Q5VWK0 638 aa11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 PTF1AQ7RTS3 328 aa11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 NBPF4Q96M43 638 aa11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 POLKQ9UBT6 870 aa11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 KNSTRNQ9Y448 316 aa11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 COL3A1P02461 1466 aaPredicted RBP11.94□□□□□ -0.5
PDLIM5-213ENST00000509357 SHANK3Q9BYB0 1731 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms