RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 EFCAB6Q5THR3 1501 aa21.13■□□□□ 0.97
SQSTM1-211ENST00000506690 UQCRHLA0A096LP55 91 aa21.13■□□□□ 0.97
SQSTM1-211ENST00000506690 UQCRHP07919 91 aa21.13■□□□□ 0.97
SQSTM1-211ENST00000506690 MCM5P33992 734 aa21.13■□□□□ 0.97
SQSTM1-211ENST00000506690 XPCQ01831 940 aaPredicted RBP21.13■□□□□ 0.97
SQSTM1-211ENST00000506690 C14orf93Q9H972 538 aaKnown RBP21.12■□□□□ 0.97
SQSTM1-211ENST00000506690 PRIM1P49642 420 aaKnown RBP21.12■□□□□ 0.97
SQSTM1-211ENST00000506690 PIK3R4Q99570 1358 aa21.11■□□□□ 0.97
SQSTM1-211ENST00000506690 U2SURPO15042 1029 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-211ENST00000506690 CSPP1Q1MSJ5 1256 aa21.11■□□□□ 0.97
SQSTM1-211ENST00000506690 MTERF4Q7Z6M4 381 aaKnown RBP21.11■□□□□ 0.97
SQSTM1-211ENST00000506690 MLH3Q9UHC1 1453 aa21.11■□□□□ 0.97
SQSTM1-211ENST00000506690 DYNC1I1O14576 645 aa21.1■□□□□ 0.97
SQSTM1-211ENST00000506690 RAPGEF3O95398 923 aa21.1■□□□□ 0.97
SQSTM1-211ENST00000506690 CHMP4BQ9H444 224 aaKnown RBP21.1■□□□□ 0.97
SQSTM1-211ENST00000506690 NCLP19338 710 aaKnown RBP21.1■□□□□ 0.97
SQSTM1-211ENST00000506690 ZNF428Q96B54 188 aa21.09■□□□□ 0.97
SQSTM1-211ENST00000506690 PPLO60437 1756 aa21.09■□□□□ 0.97
SQSTM1-211ENST00000506690 SIRT2Q8IXJ6 389 aa21.09■□□□□ 0.97
SQSTM1-211ENST00000506690 TULP4Q9NRJ4 1543 aa21.09■□□□□ 0.97
SQSTM1-211ENST00000506690 PKP1Q13835 747 aa21.07■□□□□ 0.96
SQSTM1-211ENST00000506690 GPT2Q8TD30 523 aa21.07■□□□□ 0.96
SQSTM1-211ENST00000506690 CWC22Q9HCG8 908 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-211ENST00000506690 HECW2Q9P2P5 1572 aa21.07■□□□□ 0.96
SQSTM1-211ENST00000506690 PTCH1Q13635 1447 aa21.07■□□□□ 0.96
SQSTM1-211ENST00000506690 GSPT1P15170 499 aaKnown RBP21.07■□□□□ 0.96
SQSTM1-211ENST00000506690 GGT6Q6P531 493 aa21.07■□□□□ 0.96
SQSTM1-211ENST00000506690 ARHGAP45Q92619 1136 aa21.06■□□□□ 0.96
SQSTM1-211ENST00000506690 C1orf115Q9H7X2 142 aa21.06■□□□□ 0.96
SQSTM1-211ENST00000506690 FAM69CQ0P6D2 419 aa21.06■□□□□ 0.96
SQSTM1-211ENST00000506690 SMAP1Q8IYB5 467 aaPredicted RBP21.06■□□□□ 0.96
SQSTM1-211ENST00000506690 CFAP44Q96MT7 982 aa21.06■□□□□ 0.96
SQSTM1-211ENST00000506690 EVC2Q86UK5 1308 aa21.06■□□□□ 0.96
SQSTM1-211ENST00000506690 DIP2BQ9P265 1576 aa21.05■□□□□ 0.96
SQSTM1-211ENST00000506690 TMEM132EQ6IEE7 984 aa21.05■□□□□ 0.96
SQSTM1-211ENST00000506690 LRSAM1Q6UWE0 723 aa21.05■□□□□ 0.96
SQSTM1-211ENST00000506690 SASS6Q6UVJ0 657 aa21.04■□□□□ 0.96
SQSTM1-211ENST00000506690 USP26Q9BXU7 913 aa21.04■□□□□ 0.96
SQSTM1-211ENST00000506690 CCDC39Q9UFE4 941 aa21.04■□□□□ 0.96
SQSTM1-211ENST00000506690 PRPF40AO75400 957 aaKnown RBP21.04■□□□□ 0.96
SQSTM1-211ENST00000506690 RBM27Q9P2N5 1060 aaKnown RBP21.04■□□□□ 0.96
SQSTM1-211ENST00000506690 PLEKHM2Q8IWE5 1019 aa21.03■□□□□ 0.96
SQSTM1-211ENST00000506690 MRPL50Q8N5N7 158 aaKnown RBP21.03■□□□□ 0.96
SQSTM1-211ENST00000506690 ZDHHC9Q9Y397 364 aa21.03■□□□□ 0.96
SQSTM1-211ENST00000506690 ARHGEF28Q8N1W1 1705 aaKnown RBP21.02■□□□□ 0.96
SQSTM1-211ENST00000506690 LMTK2Q8IWU2 1503 aa21.02■□□□□ 0.95
SQSTM1-211ENST00000506690 ANKRD26Q9UPS8 1709 aa21.02■□□□□ 0.95
SQSTM1-211ENST00000506690 TMEM63CQ9P1W3 806 aa21.02■□□□□ 0.95
SQSTM1-211ENST00000506690 ABCC4O15439 1325 aa21.01■□□□□ 0.95
SQSTM1-211ENST00000506690 A0A1W2PP64 1363 aa21.01■□□□□ 0.95
SQSTM1-211ENST00000506690 VAMP4O75379 141 aa20.99■□□□□ 0.95
SQSTM1-211ENST00000506690 TTC22Q5TAA0 569 aa20.99■□□□□ 0.95
SQSTM1-211ENST00000506690 RICTORQ6R327 1708 aa20.99■□□□□ 0.95
SQSTM1-211ENST00000506690 ZGPATQ8N5A5 531 aaKnown RBP20.99■□□□□ 0.95
SQSTM1-211ENST00000506690 SYCE3A1L190 88 aa20.98■□□□□ 0.95
SQSTM1-211ENST00000506690 GGNBP2Q9H3C7 697 aa20.98■□□□□ 0.95
SQSTM1-211ENST00000506690 PNPLA6Q8IY17 1366 aa20.98■□□□□ 0.95
SQSTM1-211ENST00000506690 FRMPD1Q5SYB0 1578 aa20.98■□□□□ 0.95
SQSTM1-211ENST00000506690 CABP2Q9NPB3 220 aa20.98■□□□□ 0.95
SQSTM1-211ENST00000506690 CDC42BPGQ6DT37 1551 aa20.97■□□□□ 0.95
SQSTM1-211ENST00000506690 ST18O60284 1047 aa20.97■□□□□ 0.95
SQSTM1-211ENST00000506690 DIAPH1O60610 1272 aaKnown RBP20.97■□□□□ 0.95
SQSTM1-211ENST00000506690 KNDC1Q76NI1 1749 aa20.97■□□□□ 0.95
SQSTM1-211ENST00000506690 LRRC7Q96NW7 1537 aa20.96■□□□□ 0.95
SQSTM1-211ENST00000506690 CHGAP10645 457 aaKnown RBP20.96■□□□□ 0.95
SQSTM1-211ENST00000506690 INTS3Q68E01 1043 aaKnown RBP20.96■□□□□ 0.95
SQSTM1-211ENST00000506690 NSFL1CQ9UNZ2 370 aaKnown RBP20.96■□□□□ 0.95
SQSTM1-211ENST00000506690 DCTPP1Q9H773 170 aa20.95■□□□□ 0.94
SQSTM1-211ENST00000506690 FCHSD2O94868 740 aa20.95■□□□□ 0.94
SQSTM1-211ENST00000506690 RPGRIP1LQ68CZ1 1315 aa20.95■□□□□ 0.94
SQSTM1-211ENST00000506690 MBD3O95983 291 aa20.94■□□□□ 0.94
SQSTM1-211ENST00000506690 CCDC94Q9BW85 323 aaPredicted RBP20.94■□□□□ 0.94
SQSTM1-211ENST00000506690 FAM135BQ49AJ0 1406 aa20.94■□□□□ 0.94
SQSTM1-211ENST00000506690 YEATS2Q9ULM3 1422 aa20.94■□□□□ 0.94
SQSTM1-211ENST00000506690 FYB1O15117 783 aa20.94■□□□□ 0.94
SQSTM1-211ENST00000506690 DIP2CQ9Y2E4 1556 aa20.93■□□□□ 0.94
SQSTM1-211ENST00000506690 TSPYL6Q8N831 410 aa20.93■□□□□ 0.94
SQSTM1-211ENST00000506690 MYRIPQ8NFW9 859 aa20.92■□□□□ 0.94
SQSTM1-211ENST00000506690 KIF24Q5T7B8 1368 aa20.92■□□□□ 0.94
SQSTM1-211ENST00000506690 TSPOAP1O95153 1857 aa20.92■□□□□ 0.94
SQSTM1-211ENST00000506690 KIAA2012Q0VF49 1180 aa20.92■□□□□ 0.94
SQSTM1-211ENST00000506690 CHAMP1Q96JM3 812 aa20.92■□□□□ 0.94
SQSTM1-211ENST00000506690 CFAP65Q6ZU64 1925 aaKnown RBP20.9■□□□□ 0.94
SQSTM1-211ENST00000506690 CAMSAP1Q5T5Y3 1602 aa20.9■□□□□ 0.94
SQSTM1-211ENST00000506690 UTP14CQ5TAP6 766 aaKnown RBP20.9■□□□□ 0.94
SQSTM1-211ENST00000506690 C16orf71Q8IYS4 520 aaPredicted RBP20.9■□□□□ 0.94
SQSTM1-211ENST00000506690 RNF214Q8ND24 703 aa20.9■□□□□ 0.94
SQSTM1-211ENST00000506690 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.9■□□□□ 0.94
SQSTM1-211ENST00000506690 NPATQ14207 1427 aa20.9■□□□□ 0.94
SQSTM1-211ENST00000506690 SDSP20132 328 aa20.89■□□□□ 0.94
SQSTM1-211ENST00000506690 ARID3AQ99856 593 aa20.89■□□□□ 0.93
SQSTM1-211ENST00000506690 API5Q9BZZ5 524 aaKnown RBP20.89■□□□□ 0.93
SQSTM1-211ENST00000506690 PRKAR2BP31323 418 aa20.88■□□□□ 0.93
SQSTM1-211ENST00000506690 CD163L1Q9NR16 1453 aa20.88■□□□□ 0.93
SQSTM1-211ENST00000506690 ZFYVE9O95405 1425 aa20.88■□□□□ 0.93
SQSTM1-211ENST00000506690 DMTNQ08495 405 aa20.88■□□□□ 0.93
SQSTM1-211ENST00000506690 CASC1Q6TDU7 716 aa20.88■□□□□ 0.93
SQSTM1-211ENST00000506690 TSPY26PQ9H489 355 aa20.88■□□□□ 0.93
SQSTM1-211ENST00000506690 IFT57Q9NWB7 429 aa20.88■□□□□ 0.93
SQSTM1-211ENST00000506690 PODXL2Q9NZ53 605 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms