RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 LMO7Q8WWI1 1683 aa16.34■□□□□ 0.21
PDLIM5-208ENST00000504489 NGLY1Q96IV0 654 aa16.33■□□□□ 0.2
PDLIM5-208ENST00000504489 C8orf37Q96NL8 207 aa16.33■□□□□ 0.2
PDLIM5-208ENST00000504489 GGNBP2Q9H3C7 697 aa16.33■□□□□ 0.2
PDLIM5-208ENST00000504489 NSD2O96028 1365 aa16.33■□□□□ 0.2
PDLIM5-208ENST00000504489 FAM83GA6ND36 823 aa16.32■□□□□ 0.2
PDLIM5-208ENST00000504489 SLIT2O94813 1529 aa16.32■□□□□ 0.2
PDLIM5-208ENST00000504489 ZC3H6P61129 1189 aaKnown RBP16.32■□□□□ 0.2
PDLIM5-208ENST00000504489 FNBP4Q8N3X1 1017 aaPredicted RBP16.32■□□□□ 0.2
PDLIM5-208ENST00000504489 KIAA0232Q92628 1395 aa16.32■□□□□ 0.2
PDLIM5-208ENST00000504489 ZNF316A6NFI3 1004 aaPredicted RBP16.31■□□□□ 0.2
PDLIM5-208ENST00000504489 PRDM11Q9NQV5 511 aa16.31■□□□□ 0.2
PDLIM5-208ENST00000504489 ABCC6O95255 1503 aa16.3■□□□□ 0.2
PDLIM5-208ENST00000504489 NPC1L1Q9UHC9 1359 aa16.3■□□□□ 0.2
PDLIM5-208ENST00000504489 AFF2P51816 1311 aa16.3■□□□□ 0.2
PDLIM5-208ENST00000504489 AMER1Q5JTC6 1135 aaPredicted RBP16.3■□□□□ 0.2
PDLIM5-208ENST00000504489 ARHGEF25Q86VW2 580 aa16.3■□□□□ 0.2
PDLIM5-208ENST00000504489 AATKQ6ZMQ8 1374 aa16.28■□□□□ 0.2
PDLIM5-208ENST00000504489 CAMTA1Q9Y6Y1 1673 aa16.28■□□□□ 0.2
PDLIM5-208ENST00000504489 SOX12O15370 315 aa16.28■□□□□ 0.2
PDLIM5-208ENST00000504489 BCL9LQ86UU0 1499 aa16.28■□□□□ 0.2
PDLIM5-208ENST00000504489 CHRNA2Q15822 529 aa16.27■□□□□ 0.2
PDLIM5-208ENST00000504489 ZNF772Q68DY9 489 aaPredicted RBP16.27■□□□□ 0.2
PDLIM5-208ENST00000504489 RGS17Q9UGC6 210 aaPredicted RBP16.27■□□□□ 0.2
PDLIM5-208ENST00000504489 DDX10Q13206 875 aaKnown RBP16.26■□□□□ 0.19
PDLIM5-208ENST00000504489 USP21Q9UK80 565 aa16.26■□□□□ 0.19
PDLIM5-208ENST00000504489 RGPD2P0DJD1 1756 aa16.26■□□□□ 0.19
PDLIM5-208ENST00000504489 PEAK1Q9H792 1746 aa16.25■□□□□ 0.19
PDLIM5-208ENST00000504489 FAM208AQ9UK61 1670 aaKnown RBP16.25■□□□□ 0.19
PDLIM5-208ENST00000504489 UNC5CLQ8IV45 518 aa16.25■□□□□ 0.19
PDLIM5-208ENST00000504489 BTG4Q9NY30 223 aa16.25■□□□□ 0.19
PDLIM5-208ENST00000504489 FBLN1P23142 703 aa16.24■□□□□ 0.19
PDLIM5-208ENST00000504489 MORC1Q86VD1 984 aa16.24■□□□□ 0.19
PDLIM5-208ENST00000504489 MAP3K19Q56UN5 1328 aa16.23■□□□□ 0.19
PDLIM5-208ENST00000504489 ATRNO75882 1429 aa16.23■□□□□ 0.19
PDLIM5-208ENST00000504489 ZBTB7CA1YPR0 619 aa16.23■□□□□ 0.19
PDLIM5-208ENST00000504489 KIF24Q5T7B8 1368 aa16.23■□□□□ 0.19
PDLIM5-208ENST00000504489 COL5A2P05997 1499 aaPredicted RBP16.22■□□□□ 0.19
PDLIM5-208ENST00000504489 CC2D1BQ5T0F9 858 aaKnown RBP16.22■□□□□ 0.19
PDLIM5-208ENST00000504489 IP6K1Q92551 441 aa16.22■□□□□ 0.19
PDLIM5-208ENST00000504489 QTRT2Q9H974 415 aaKnown RBP16.22■□□□□ 0.19
PDLIM5-208ENST00000504489 AXIN2Q9Y2T1 843 aa16.22■□□□□ 0.19
PDLIM5-208ENST00000504489 RTL1A6NKG5 1358 aa16.22■□□□□ 0.19
PDLIM5-208ENST00000504489 BLMP54132 1417 aaPredicted RBP16.21■□□□□ 0.19
PDLIM5-208ENST00000504489 RRS1Q15050 365 aaKnown RBP16.21■□□□□ 0.19
PDLIM5-208ENST00000504489 TRPC5Q9UL62 973 aaPredicted RBP16.21■□□□□ 0.19
PDLIM5-208ENST00000504489 WNK3Q9BYP7 1800 aa16.21■□□□□ 0.19
PDLIM5-208ENST00000504489 AMPHP49418 695 aa16.2■□□□□ 0.18
PDLIM5-208ENST00000504489 EVA1CP58658 441 aa16.2■□□□□ 0.18
PDLIM5-208ENST00000504489 VPS72Q15906 364 aa16.2■□□□□ 0.18
PDLIM5-208ENST00000504489 POTEAQ6S8J7 498 aa16.2■□□□□ 0.18
PDLIM5-208ENST00000504489 GLI3P10071 1580 aa16.19■□□□□ 0.18
PDLIM5-208ENST00000504489 TNNT2P45379 298 aaPredicted RBP16.19■□□□□ 0.18
PDLIM5-208ENST00000504489 POLKQ9UBT6 870 aa16.19■□□□□ 0.18
PDLIM5-208ENST00000504489 SMG6Q86US8 1419 aaKnown RBP16.19■□□□□ 0.18
PDLIM5-208ENST00000504489 FLT4P35916 1363 aa16.18■□□□□ 0.18
PDLIM5-208ENST00000504489 BRWD3Q6RI45 1802 aa16.18■□□□□ 0.18
PDLIM5-208ENST00000504489 HOXC9P31274 260 aa16.18■□□□□ 0.18
PDLIM5-208ENST00000504489 EMILIN1Q9Y6C2 1016 aa16.18■□□□□ 0.18
PDLIM5-208ENST00000504489 STRN4Q9NRL3 753 aa16.17■□□□□ 0.18
PDLIM5-208ENST00000504489 WDR17Q8IZU2 1322 aa16.17■□□□□ 0.18
PDLIM5-208ENST00000504489 INSRP06213 1382 aa16.16■□□□□ 0.18
PDLIM5-208ENST00000504489 RBM6P78332 1123 aaKnown RBP16.16■□□□□ 0.18
PDLIM5-208ENST00000504489 GJD4Q96KN9 370 aaPredicted RBP16.16■□□□□ 0.18
PDLIM5-208ENST00000504489 CRB1P82279 1406 aa16.16■□□□□ 0.18
PDLIM5-208ENST00000504489 ERBB3P21860 1342 aa16.16■□□□□ 0.18
PDLIM5-208ENST00000504489 SPATA31A5Q5VU36 1347 aa16.16■□□□□ 0.18
PDLIM5-208ENST00000504489 SPATA31A7Q8IWB4 1347 aa16.16■□□□□ 0.18
PDLIM5-208ENST00000504489 CDK12Q9NYV4 1490 aaPredicted RBP16.16■□□□□ 0.18
PDLIM5-208ENST00000504489 RXRBP28702 533 aa16.15■□□□□ 0.18
PDLIM5-208ENST00000504489 LARP1Q6PKG0 1096 aaKnown RBP16.15■□□□□ 0.18
PDLIM5-208ENST00000504489 PPM1GO15355 546 aaPredicted RBP16.14■□□□□ 0.17
PDLIM5-208ENST00000504489 CNGB1Q14028 1251 aaPredicted RBP16.14■□□□□ 0.17
PDLIM5-208ENST00000504489 HSP90AB2PQ58FF8 381 aa16.14■□□□□ 0.17
PDLIM5-208ENST00000504489 ANKRD24Q8TF21 1146 aa16.14■□□□□ 0.17
PDLIM5-208ENST00000504489 CCDC9Q9Y3X0 531 aaKnown RBP16.14■□□□□ 0.17
PDLIM5-208ENST00000504489 SPATA31A1Q5TZJ5 1347 aa16.14■□□□□ 0.17
PDLIM5-208ENST00000504489 PARD3Q8TEW0 1356 aa16.13■□□□□ 0.17
PDLIM5-208ENST00000504489 PARP4Q9UKK3 1724 aaKnown RBP16.13■□□□□ 0.17
PDLIM5-208ENST00000504489 THSD7AQ9UPZ6 1657 aa16.12■□□□□ 0.17
PDLIM5-208ENST00000504489 CSB-PGBD3P0DP91 1061 aa16.12■□□□□ 0.17
PDLIM5-208ENST00000504489 MTHFSP49914 203 aa16.12■□□□□ 0.17
PDLIM5-208ENST00000504489 TOM1L2Q6ZVM7 507 aa16.12■□□□□ 0.17
PDLIM5-208ENST00000504489 CARD10Q9BWT7 1032 aa16.12■□□□□ 0.17
PDLIM5-208ENST00000504489 ONECUT3O60422 494 aaPredicted RBP16.11■□□□□ 0.17
PDLIM5-208ENST00000504489 RALBP1Q15311 655 aa16.11■□□□□ 0.17
PDLIM5-208ENST00000504489 LTV1Q96GA3 475 aaPredicted RBP16.11■□□□□ 0.17
PDLIM5-208ENST00000504489 THRAP3Q9Y2W1 955 aaKnown RBP16.11■□□□□ 0.17
PDLIM5-208ENST00000504489 RGPD1P0DJD0 1748 aa16.11■□□□□ 0.17
PDLIM5-208ENST00000504489 TCP11L2Q8N4U5 519 aa16.1■□□□□ 0.17
PDLIM5-208ENST00000504489 PPP2R1AP30153 589 aa16.09■□□□□ 0.17
PDLIM5-208ENST00000504489 BARGINQ6ZT62 677 aa16.09■□□□□ 0.17
PDLIM5-208ENST00000504489 NLRP2Q9NX02 1062 aa16.09■□□□□ 0.17
PDLIM5-208ENST00000504489 KAT6BQ8WYB5 2073 aa16.08■□□□□ 0.16
PDLIM5-208ENST00000504489 USP35Q9P2H5 1018 aa16.08■□□□□ 0.16
PDLIM5-208ENST00000504489 EIF4A2Q14240 407 aaKnown RBP16.07■□□□□ 0.16
PDLIM5-208ENST00000504489 FAM98CQ17RN3 349 aaKnown RBP16.07■□□□□ 0.16
PDLIM5-208ENST00000504489 AKT1S1Q96B36 256 aa16.07■□□□□ 0.16
PDLIM5-208ENST00000504489 RGS12O14924 1447 aa16.07■□□□□ 0.16
PDLIM5-208ENST00000504489 COL3A1P02461 1466 aaPredicted RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms