RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 LRRC7Q96NW7 1537 aa20.73■□□□□ 0.91
COL6A1-206ENST00000498614 ATP7BP35670 1465 aa20.73■□□□□ 0.91
COL6A1-206ENST00000498614 TRIM27P14373 513 aa20.72■□□□□ 0.91
COL6A1-206ENST00000498614 IL16Q14005 1332 aa20.72■□□□□ 0.91
COL6A1-206ENST00000498614 SPRYD3Q8NCJ5 442 aa20.72■□□□□ 0.91
COL6A1-206ENST00000498614 PNNQ9H307 717 aaKnown RBP20.72■□□□□ 0.91
COL6A1-206ENST00000498614 NUTM2FA1L443 756 aa20.71■□□□□ 0.91
COL6A1-206ENST00000498614 PRKAR2BP31323 418 aa20.71■□□□□ 0.91
COL6A1-206ENST00000498614 L1TD1Q5T7N2 865 aaKnown RBP20.71■□□□□ 0.91
COL6A1-206ENST00000498614 MAP2P11137 1827 aaKnown RBP20.7■□□□□ 0.9
COL6A1-206ENST00000498614 FCHSD2O94868 740 aa20.7■□□□□ 0.9
COL6A1-206ENST00000498614 RSPH6AQ9H0K4 717 aa20.7■□□□□ 0.9
COL6A1-206ENST00000498614 RRAGDQ9NQL2 400 aaPredicted RBP20.7■□□□□ 0.9
COL6A1-206ENST00000498614 NOB1Q9ULX3 412 aaKnown RBP20.7■□□□□ 0.9
COL6A1-206ENST00000498614 PPIP5K1Q6PFW1 1433 aa20.69■□□□□ 0.9
COL6A1-206ENST00000498614 CDC42BPGQ6DT37 1551 aa20.69■□□□□ 0.9
COL6A1-206ENST00000498614 WASLO00401 505 aaPredicted RBP20.69■□□□□ 0.9
COL6A1-206ENST00000498614 ITPRIPQ8IWB1 547 aa20.69■□□□□ 0.9
COL6A1-206ENST00000498614 HMOX1P09601 288 aa20.68■□□□□ 0.9
COL6A1-206ENST00000498614 ATF7IPQ6VMQ6 1270 aa20.68■□□□□ 0.9
COL6A1-206ENST00000498614 EMILIN1Q9Y6C2 1016 aa20.68■□□□□ 0.9
COL6A1-206ENST00000498614 NME9Q86XW9 330 aa20.68■□□□□ 0.9
COL6A1-206ENST00000498614 ZRANB1Q9UGI0 708 aa20.68■□□□□ 0.9
COL6A1-206ENST00000498614 FAM135BQ49AJ0 1406 aa20.67■□□□□ 0.9
COL6A1-206ENST00000498614 TECPR2O15040 1411 aa20.67■□□□□ 0.9
COL6A1-206ENST00000498614 ARXQ96QS3 562 aa20.67■□□□□ 0.9
COL6A1-206ENST00000498614 PHACTR3Q96KR7 559 aa20.66■□□□□ 0.9
COL6A1-206ENST00000498614 CPSF1Q10570 1443 aaKnown RBP20.65■□□□□ 0.9
COL6A1-206ENST00000498614 MCM4P33991 863 aa20.65■□□□□ 0.9
COL6A1-206ENST00000498614 EDC4Q6P2E9 1401 aaKnown RBP20.65■□□□□ 0.9
COL6A1-206ENST00000498614 C22orf23Q9BZE7 217 aa20.65■□□□□ 0.9
COL6A1-206ENST00000498614 DDX19BQ9UMR2 479 aa20.65■□□□□ 0.9
COL6A1-206ENST00000498614 DIP2AQ14689 1571 aa20.64■□□□□ 0.9
COL6A1-206ENST00000498614 MFAP1P55081 439 aaKnown RBP20.64■□□□□ 0.89
COL6A1-206ENST00000498614 TMEM57Q8N5G2 664 aa20.64■□□□□ 0.89
COL6A1-206ENST00000498614 XRCC6P12956 609 aaKnown RBP eCLIP20.64■□□□□ 0.89
COL6A1-206ENST00000498614 NUDT16Q96DE0 195 aaKnown RBP20.64■□□□□ 0.89
COL6A1-206ENST00000498614 SIRT1Q96EB6 747 aa20.64■□□□□ 0.89
COL6A1-206ENST00000498614 CPS1P31327 1500 aa20.63■□□□□ 0.89
COL6A1-206ENST00000498614 THUMPD2Q9BTF0 503 aaKnown RBP20.63■□□□□ 0.89
COL6A1-206ENST00000498614 GZF1Q9H116 711 aaPredicted RBP20.63■□□□□ 0.89
COL6A1-206ENST00000498614 FSD2A1L4K1 749 aa20.62■□□□□ 0.89
COL6A1-206ENST00000498614 KNDC1Q76NI1 1749 aa20.62■□□□□ 0.89
COL6A1-206ENST00000498614 KIF16BQ96L93 1317 aa20.62■□□□□ 0.89
COL6A1-206ENST00000498614 GOLGA6L3A6NEY3 463 aa20.61■□□□□ 0.89
COL6A1-206ENST00000498614 NFE2L2Q16236 605 aa20.61■□□□□ 0.89
COL6A1-206ENST00000498614 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.61■□□□□ 0.89
COL6A1-206ENST00000498614 IL13P35225 146 aa20.6■□□□□ 0.89
COL6A1-206ENST00000498614 PIK3R4Q99570 1358 aa20.6■□□□□ 0.89
COL6A1-206ENST00000498614 RRS1Q15050 365 aaKnown RBP20.6■□□□□ 0.89
COL6A1-206ENST00000498614 CHMP5Q9NZZ3 219 aa20.6■□□□□ 0.89
COL6A1-206ENST00000498614 CHD2O14647 1828 aaKnown RBP20.6■□□□□ 0.89
COL6A1-206ENST00000498614 STRCQ7RTU9 1775 aa20.6■□□□□ 0.89
COL6A1-206ENST00000498614 IPO8O15397 1037 aaKnown RBP20.59■□□□□ 0.89
COL6A1-206ENST00000498614 HDAC1Q13547 482 aaPredicted RBP20.59■□□□□ 0.89
COL6A1-206ENST00000498614 ALDH1L2Q3SY69 923 aa20.59■□□□□ 0.89
COL6A1-206ENST00000498614 COG3Q96JB2 828 aa20.59■□□□□ 0.89
COL6A1-206ENST00000498614 PANK2Q9BZ23 570 aa20.59■□□□□ 0.89
COL6A1-206ENST00000498614 CCDC61Q9Y6R9 512 aa20.59■□□□□ 0.89
COL6A1-206ENST00000498614 XRN1Q8IZH2 1706 aaKnown RBP20.58■□□□□ 0.89
COL6A1-206ENST00000498614 CDK12Q9NYV4 1490 aaPredicted RBP20.58■□□□□ 0.89
COL6A1-206ENST00000498614 MON2Q7Z3U7 1717 aa20.58■□□□□ 0.88
COL6A1-206ENST00000498614 PTCH1Q13635 1447 aa20.57■□□□□ 0.88
COL6A1-206ENST00000498614 C14orf37Q86TY3 774 aa20.57■□□□□ 0.88
COL6A1-206ENST00000498614 UBE2Q2Q8WVN8 375 aa20.57■□□□□ 0.88
COL6A1-206ENST00000498614 ZBTB40Q9NUA8 1239 aa20.57■□□□□ 0.88
COL6A1-206ENST00000498614 TRAK2O60296 914 aa20.57■□□□□ 0.88
COL6A1-206ENST00000498614 PROSER2Q86WR7 435 aaPredicted RBP20.56■□□□□ 0.88
COL6A1-206ENST00000498614 PRR36Q9H6K5 1346 aa20.56■□□□□ 0.88
COL6A1-206ENST00000498614 AATKQ6ZMQ8 1374 aa20.55■□□□□ 0.88
COL6A1-206ENST00000498614 TSPYL6Q8N831 410 aa20.55■□□□□ 0.88
COL6A1-206ENST00000498614 ITSN1Q15811 1721 aa20.55■□□□□ 0.88
COL6A1-206ENST00000498614 ELL2O00472 640 aaPredicted RBP20.54■□□□□ 0.88
COL6A1-206ENST00000498614 AKAP12Q02952 1782 aa20.54■□□□□ 0.88
COL6A1-206ENST00000498614 VAMP4O75379 141 aa20.53■□□□□ 0.88
COL6A1-206ENST00000498614 ZNF692Q9BU19 519 aaPredicted RBP20.53■□□□□ 0.88
COL6A1-206ENST00000498614 ZNF335Q9H4Z2 1342 aaPredicted RBP20.53■□□□□ 0.88
COL6A1-206ENST00000498614 CALD1Q05682 793 aaKnown RBP20.53■□□□□ 0.88
COL6A1-206ENST00000498614 SMC5Q8IY18 1101 aa20.53■□□□□ 0.88
COL6A1-206ENST00000498614 MBIPQ9NS73 344 aa20.53■□□□□ 0.88
COL6A1-206ENST00000498614 DLG5Q8TDM6 1919 aa20.53■□□□□ 0.88
COL6A1-206ENST00000498614 GNAI1P63096 354 aa20.52■□□□□ 0.88
COL6A1-206ENST00000498614 HSCBQ8IWL3 235 aa20.52■□□□□ 0.88
COL6A1-206ENST00000498614 IFT57Q9NWB7 429 aa20.52■□□□□ 0.88
COL6A1-206ENST00000498614 MRPL50Q8N5N7 158 aaKnown RBP20.51■□□□□ 0.87
COL6A1-206ENST00000498614 FAM83GA6ND36 823 aa20.51■□□□□ 0.87
COL6A1-206ENST00000498614 ZNF428Q96B54 188 aa20.51■□□□□ 0.87
COL6A1-206ENST00000498614 ZNF853P0CG23 659 aa20.5■□□□□ 0.87
COL6A1-206ENST00000498614 BRPF1P55201 1214 aaPredicted RBP20.5■□□□□ 0.87
COL6A1-206ENST00000498614 STRCP1A6NGW2 1772 aa20.5■□□□□ 0.87
COL6A1-206ENST00000498614 DCTN1Q14203 1278 aa20.49■□□□□ 0.87
COL6A1-206ENST00000498614 DDIT3P35638 169 aa20.48■□□□□ 0.87
COL6A1-206ENST00000498614 NCOA3Q9Y6Q9 1424 aa20.48■□□□□ 0.87
COL6A1-206ENST00000498614 TWISTNBQ3B726 338 aaPredicted RBP20.48■□□□□ 0.87
COL6A1-206ENST00000498614 MRE11P49959 708 aa20.47■□□□□ 0.87
COL6A1-206ENST00000498614 LMOD3Q0VAK6 560 aa20.47■□□□□ 0.87
COL6A1-206ENST00000498614 LNPKQ9C0E8 428 aa20.47■□□□□ 0.87
COL6A1-206ENST00000498614 C1orf115Q9H7X2 142 aa20.47■□□□□ 0.87
COL6A1-206ENST00000498614 DDX11L8A8MPP1 907 aa20.46■□□□□ 0.87
COL6A1-206ENST00000498614 C8orf58Q8NAV2 365 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms