RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TOPBP1Q92547 1522 aa7.54□□□□□ -1.2
USP54-217ENST00000498213 KCNH2Q12809 1159 aa7.54□□□□□ -1.2
USP54-217ENST00000498213 LYPD8Q6UX82 237 aa7.54□□□□□ -1.2
USP54-217ENST00000498213 EVA1BQ9NVM1 165 aa7.54□□□□□ -1.2
USP54-217ENST00000498213 KIF13AQ9H1H9 1805 aa7.54□□□□□ -1.2
USP54-217ENST00000498213 SYNJ1O43426 1573 aa7.54□□□□□ -1.2
USP54-217ENST00000498213 BAP1Q92560 729 aa7.53□□□□□ -1.2
USP54-217ENST00000498213 SNAPC4Q5SXM2 1469 aa7.53□□□□□ -1.2
USP54-217ENST00000498213 PLEKHG3A1L390 1219 aa7.52□□□□□ -1.21
USP54-217ENST00000498213 FAM181BA6NEQ2 426 aa7.52□□□□□ -1.21
USP54-217ENST00000498213 GMPRP36959 345 aa7.52□□□□□ -1.21
USP54-217ENST00000498213 RTL5Q5HYW3 569 aaPredicted RBP7.52□□□□□ -1.21
USP54-217ENST00000498213 NPAS3Q8IXF0 933 aa7.52□□□□□ -1.21
USP54-217ENST00000498213 IL27Q8NEV9 243 aa7.52□□□□□ -1.21
USP54-217ENST00000498213 IRF7Q92985 503 aa7.52□□□□□ -1.21
USP54-217ENST00000498213 TLL2Q9Y6L7 1015 aa7.52□□□□□ -1.21
USP54-217ENST00000498213 VEGFBP49765 207 aa7.51□□□□□ -1.21
USP54-217ENST00000498213 PCMTD1Q96MG8 357 aaPredicted RBP7.51□□□□□ -1.21
USP54-217ENST00000498213 VARSP26640 1264 aaKnown RBP7.5□□□□□ -1.21
USP54-217ENST00000498213 BRPF1P55201 1214 aaPredicted RBP7.5□□□□□ -1.21
USP54-217ENST00000498213 ZNF511Q8NB15 262 aa7.5□□□□□ -1.21
USP54-217ENST00000498213 PROCA1Q8NCQ7 364 aaPredicted RBP7.5□□□□□ -1.21
USP54-217ENST00000498213 ZFP42Q96MM3 310 aa7.5□□□□□ -1.21
USP54-217ENST00000498213 MAP10Q9P2G4 905 aa7.5□□□□□ -1.21
USP54-217ENST00000498213 ABCC10Q5T3U5 1492 aa7.49□□□□□ -1.21
USP54-217ENST00000498213 H3BM21 787 aa7.49□□□□□ -1.21
USP54-217ENST00000498213 PER1O15534 1290 aaPredicted RBP7.49□□□□□ -1.21
USP54-217ENST00000498213 NNTQ13423 1086 aa7.49□□□□□ -1.21
USP54-217ENST00000498213 AGERQ15109 404 aa7.49□□□□□ -1.21
USP54-217ENST00000498213 ZSCAN1Q8NBB4 408 aa7.49□□□□□ -1.21
USP54-217ENST00000498213 MPNDQ8N594 471 aa7.48□□□□□ -1.21
USP54-217ENST00000498213 ARMC2Q8NEN0 867 aa7.48□□□□□ -1.21
USP54-217ENST00000498213 TARBP1Q13395 1621 aaKnown RBP7.48□□□□□ -1.21
USP54-217ENST00000498213 RAD54L2Q9Y4B4 1467 aa7.48□□□□□ -1.21
USP54-217ENST00000498213 AP1G2O75843 785 aa7.47□□□□□ -1.21
USP54-217ENST00000498213 F12P00748 615 aaPredicted RBP7.47□□□□□ -1.21
USP54-217ENST00000498213 SCARF1Q14162 830 aa7.47□□□□□ -1.21
USP54-217ENST00000498213 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.47□□□□□ -1.21
USP54-217ENST00000498213 ADH1CP00326 375 aa7.46□□□□□ -1.22
USP54-217ENST00000498213 WDR4P57081 412 aaKnown RBP7.46□□□□□ -1.22
USP54-217ENST00000498213 NBPF14Q5TI25 921 aa7.46□□□□□ -1.22
USP54-217ENST00000498213 MRPL14Q6P1L8 145 aaKnown RBP7.46□□□□□ -1.22
USP54-217ENST00000498213 GOPCQ9HD26 462 aa7.46□□□□□ -1.22
USP54-217ENST00000498213 ERBB4Q15303 1308 aa7.46□□□□□ -1.22
USP54-217ENST00000498213 TIMP2P16035 220 aa7.45□□□□□ -1.22
USP54-217ENST00000498213 LORP23490 312 aaPredicted RBP7.45□□□□□ -1.22
USP54-217ENST00000498213 CTDSPL2Q05D32 466 aa7.45□□□□□ -1.22
USP54-217ENST00000498213 FAM174AQ8TBP5 190 aa7.45□□□□□ -1.22
USP54-217ENST00000498213 PURBQ96QR8 312 aaKnown RBP7.45□□□□□ -1.22
USP54-217ENST00000498213 WIZO95785 1651 aa7.44□□□□□ -1.22
USP54-217ENST00000498213 PPP2R2DQ66LE6 453 aa7.44□□□□□ -1.22
USP54-217ENST00000498213 SPATA31D1Q6ZQQ2 1576 aa7.44□□□□□ -1.22
USP54-217ENST00000498213 PRKCSHP14314 528 aaPredicted RBP7.43□□□□□ -1.22
USP54-217ENST00000498213 ARID5BQ14865 1188 aa7.43□□□□□ -1.22
USP54-217ENST00000498213 BPHLQ86WA6 291 aaPredicted RBP7.43□□□□□ -1.22
USP54-217ENST00000498213 PNMA1Q8ND90 353 aa7.43□□□□□ -1.22
USP54-217ENST00000498213 SOGA1O94964 1423 aa7.43□□□□□ -1.22
USP54-217ENST00000498213 POLA1P09884 1462 aaPredicted RBP7.43□□□□□ -1.22
USP54-217ENST00000498213 SOBPA7XYQ1 873 aa7.42□□□□□ -1.22
USP54-217ENST00000498213 RFC5P40937 340 aa7.42□□□□□ -1.22
USP54-217ENST00000498213 LRRN4Q8WUT4 740 aa7.42□□□□□ -1.22
USP54-217ENST00000498213 FOXJ1Q92949 421 aa7.42□□□□□ -1.22
USP54-217ENST00000498213 KLF16Q9BXK1 252 aaPredicted RBP7.42□□□□□ -1.22
USP54-217ENST00000498213 MAGI1Q96QZ7 1491 aaPredicted RBP7.42□□□□□ -1.22
USP54-217ENST00000498213 ABCC8Q09428 1581 aa7.42□□□□□ -1.22
USP54-217ENST00000498213 DIP2BQ9P265 1576 aa7.42□□□□□ -1.22
USP54-217ENST00000498213 TSPOAP1O95153 1857 aa7.41□□□□□ -1.22
USP54-217ENST00000498213 LOC100996750A0A140TA64 210 aa7.41□□□□□ -1.22
USP54-217ENST00000498213 USP17L8P0C7I0 530 aa7.41□□□□□ -1.22
USP54-217ENST00000498213 CDK15Q96Q40 435 aa7.41□□□□□ -1.22
USP54-217ENST00000498213 KRTAP4-6Q9BYQ5 205 aa7.41□□□□□ -1.22
USP54-217ENST00000498213 DNMBPQ6XZF7 1577 aa7.41□□□□□ -1.22
USP54-217ENST00000498213 MAGEB6P1A0A0J9YX57 407 aa7.4□□□□□ -1.22
USP54-217ENST00000498213 ZIC2O95409 532 aaPredicted RBP7.4□□□□□ -1.22
USP54-217ENST00000498213 GPKOWQ92917 476 aaPredicted RBP eCLIP7.4□□□□□ -1.22
USP54-217ENST00000498213 GRIN2BQ13224 1484 aa7.39□□□□□ -1.23
USP54-217ENST00000498213 NR6A1Q15406 480 aa7.39□□□□□ -1.23
USP54-217ENST00000498213 TMEM259Q4ZIN3 620 aa7.39□□□□□ -1.23
USP54-217ENST00000498213 C6orf118Q5T5N4 469 aa7.39□□□□□ -1.23
USP54-217ENST00000498213 FBXO31Q5XUX0 539 aaPredicted RBP7.39□□□□□ -1.23
USP54-217ENST00000498213 CARD14Q9BXL6 1004 aa7.39□□□□□ -1.23
USP54-217ENST00000498213 ZFAND3Q9H8U3 227 aa7.39□□□□□ -1.23
USP54-217ENST00000498213 CEP170Q5SW79 1584 aa7.38□□□□□ -1.23
USP54-217ENST00000498213 MAN1A2O60476 641 aa7.38□□□□□ -1.23
USP54-217ENST00000498213 NR5A1Q13285 461 aa7.38□□□□□ -1.23
USP54-217ENST00000498213 ITPKCQ96DU7 683 aa7.38□□□□□ -1.23
USP54-217ENST00000498213 FKBPLQ9UIM3 349 aa7.38□□□□□ -1.23
USP54-217ENST00000498213 COL17A1Q9UMD9 1497 aaPredicted RBP7.37□□□□□ -1.23
USP54-217ENST00000498213 NR3C2P08235 984 aa7.37□□□□□ -1.23
USP54-217ENST00000498213 VSIG8P0DPA2 414 aa7.37□□□□□ -1.23
USP54-217ENST00000498213 ARHGAP9Q9BRR9 750 aa7.37□□□□□ -1.23
USP54-217ENST00000498213 ZC3H4Q9UPT8 1303 aaKnown RBP7.36□□□□□ -1.23
USP54-217ENST00000498213 GRM5P41594 1212 aa7.36□□□□□ -1.23
USP54-217ENST00000498213 HSPA2P54652 639 aa7.36□□□□□ -1.23
USP54-217ENST00000498213 C4orf48Q5BLP8 95 aa7.36□□□□□ -1.23
USP54-217ENST00000498213 ZBTB33Q86T24 672 aa7.36□□□□□ -1.23
USP54-217ENST00000498213 UPP2O95045 317 aa7.35□□□□□ -1.23
USP54-217ENST00000498213 BMP2P12643 396 aa7.35□□□□□ -1.23
USP54-217ENST00000498213 PTK2Q05397 1052 aa7.35□□□□□ -1.23
USP54-217ENST00000498213 PDXDC2PQ6P474 469 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 736 ms