RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 ANKRD30AQ9BXX3 1397 aa6.6□□□□□ -1.35
USP54-216ENST00000498143 H0YIN7 160 aa6.6□□□□□ -1.35
USP54-216ENST00000498143 TRAPPC3LQ5T215 181 aa6.6□□□□□ -1.35
USP54-216ENST00000498143 FER1L4A9Z1Z3 1794 aa6.6□□□□□ -1.35
USP54-216ENST00000498143 IRX6P78412 446 aaPredicted RBP6.6□□□□□ -1.35
USP54-216ENST00000498143 OS9Q13438 667 aaPredicted RBP6.6□□□□□ -1.35
USP54-216ENST00000498143 NBPF11Q86T75 865 aa6.59□□□□□ -1.35
USP54-216ENST00000498143 TROQ12816 1431 aaPredicted RBP6.59□□□□□ -1.35
USP54-216ENST00000498143 BRD4O60885 1362 aaPredicted RBP6.59□□□□□ -1.35
USP54-216ENST00000498143 C2orf69Q8N8R5 385 aa6.59□□□□□ -1.35
USP54-216ENST00000498143 GNPATO15228 680 aa6.59□□□□□ -1.36
USP54-216ENST00000498143 HTATIP2Q9BUP3 242 aa6.59□□□□□ -1.36
USP54-216ENST00000498143 TATP17735 454 aaPredicted RBP6.58□□□□□ -1.36
USP54-216ENST00000498143 FBXW7Q969H0 707 aa6.58□□□□□ -1.36
USP54-216ENST00000498143 RIMS2Q9UQ26 1411 aa6.58□□□□□ -1.36
USP54-216ENST00000498143 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.58□□□□□ -1.36
USP54-216ENST00000498143 EIF3AQ14152 1382 aaKnown RBP6.58□□□□□ -1.36
USP54-216ENST00000498143 PNMA8AQ86V59 439 aaPredicted RBP6.57□□□□□ -1.36
USP54-216ENST00000498143 FOXN1O15353 648 aa6.57□□□□□ -1.36
USP54-216ENST00000498143 THRAP3Q9Y2W1 955 aaKnown RBP6.57□□□□□ -1.36
USP54-216ENST00000498143 CEP170BQ9Y4F5 1589 aaPredicted RBP6.57□□□□□ -1.36
USP54-216ENST00000498143 KIF7Q2M1P5 1343 aa6.57□□□□□ -1.36
USP54-216ENST00000498143 ZNF644Q9H582 1327 aaPredicted RBP6.57□□□□□ -1.36
USP54-216ENST00000498143 ZCCHC11Q5TAX3 1644 aaKnown RBP6.57□□□□□ -1.36
USP54-216ENST00000498143 HMGB1P1B2RPK0 211 aaPredicted RBP6.57□□□□□ -1.36
USP54-216ENST00000498143 PLSCR1O15162 318 aa6.57□□□□□ -1.36
USP54-216ENST00000498143 TMF1P82094 1093 aa6.57□□□□□ -1.36
USP54-216ENST00000498143 WWC1Q8IX03 1113 aa6.57□□□□□ -1.36
USP54-216ENST00000498143 KCTD17Q8N5Z5 321 aa6.57□□□□□ -1.36
USP54-216ENST00000498143 TRAK1Q9UPV9 953 aa6.57□□□□□ -1.36
USP54-216ENST00000498143 TCERG1O14776 1098 aaKnown RBP6.57□□□□□ -1.36
USP54-216ENST00000498143 HECW1Q76N89 1606 aa6.56□□□□□ -1.36
USP54-216ENST00000498143 SLC27A3Q5K4L6 730 aa6.56□□□□□ -1.36
USP54-216ENST00000498143 DNTTIP2Q5QJE6 756 aaKnown RBP6.56□□□□□ -1.36
USP54-216ENST00000498143 NLGN2Q8NFZ4 835 aa6.56□□□□□ -1.36
USP54-216ENST00000498143 SYMPKQ92797 1274 aaKnown RBP6.56□□□□□ -1.36
USP54-216ENST00000498143 SUPT16HQ9Y5B9 1047 aaKnown RBP6.56□□□□□ -1.36
USP54-216ENST00000498143 MMP10P09238 476 aa6.56□□□□□ -1.36
USP54-216ENST00000498143 RBM10P98175 930 aaKnown RBP6.56□□□□□ -1.36
USP54-216ENST00000498143 LBHD1Q9BQE6 289 aaPredicted RBP6.56□□□□□ -1.36
USP54-216ENST00000498143 KIF15Q9NS87 1388 aa6.56□□□□□ -1.36
USP54-216ENST00000498143 CAPNS2Q96L46 248 aa6.56□□□□□ -1.36
USP54-216ENST00000498143 ADAMTSL3P82987 1691 aa6.55□□□□□ -1.36
USP54-216ENST00000498143 LARP1Q6PKG0 1096 aaKnown RBP6.55□□□□□ -1.36
USP54-216ENST00000498143 MCOLN1Q9GZU1 580 aa6.55□□□□□ -1.36
USP54-216ENST00000498143 TRPA1O75762 1119 aa6.55□□□□□ -1.36
USP54-216ENST00000498143 SOGA3Q5TF21 947 aa6.55□□□□□ -1.36
USP54-216ENST00000498143 KCNH5Q8NCM2 988 aa6.55□□□□□ -1.36
USP54-216ENST00000498143 A0A0G2JLW4 131 aa6.55□□□□□ -1.36
USP54-216ENST00000498143 LMNB1P20700 586 aa6.55□□□□□ -1.36
USP54-216ENST00000498143 HDGFL2Q7Z4V5 671 aaPredicted RBP6.55□□□□□ -1.36
USP54-216ENST00000498143 HACL1Q9UJ83 578 aa6.55□□□□□ -1.36
USP54-216ENST00000498143 RFX1P22670 979 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 RBM26Q5T8P6 1007 aaKnown RBP6.54□□□□□ -1.36
USP54-216ENST00000498143 PPM1EQ8WY54 764 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 ZNF592Q92610 1267 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 CREBZFQ9NS37 354 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 ZBTB47Q9UFB7 747 aaPredicted RBP6.54□□□□□ -1.36
USP54-216ENST00000498143 ADGRL3Q9HAR2 1447 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 H7C1D1 291 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 GOLGA2Q08379 1002 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 NUP155O75694 1391 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 IL2RBP14784 551 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 HUNKP57058 714 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 WAPLQ7Z5K2 1190 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 CCDC144AA2RUR9 1427 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 EIF4E1BA6NMX2 242 aaKnown RBP6.54□□□□□ -1.36
USP54-216ENST00000498143 ANP32CO43423 234 aa6.54□□□□□ -1.36
USP54-216ENST00000498143 PPEF1O14829 653 aaPredicted RBP6.53□□□□□ -1.36
USP54-216ENST00000498143 ZMYND15Q9H091 742 aa6.53□□□□□ -1.36
USP54-216ENST00000498143 TMOD3Q9NYL9 352 aa6.53□□□□□ -1.36
USP54-216ENST00000498143 RBM19Q9Y4C8 960 aaKnown RBP6.53□□□□□ -1.36
USP54-216ENST00000498143 CLGNO14967 610 aa6.53□□□□□ -1.36
USP54-216ENST00000498143 TNNT3P45378 269 aaPredicted RBP6.53□□□□□ -1.36
USP54-216ENST00000498143 NUTM1Q86Y26 1132 aa6.53□□□□□ -1.36
USP54-216ENST00000498143 PLEKHG2Q9H7P9 1386 aa6.53□□□□□ -1.36
USP54-216ENST00000498143 SPATA31A3Q5VYP0 1347 aa6.53□□□□□ -1.36
USP54-216ENST00000498143 FAM177BA6PVY3 158 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 IGSF3O75054 1194 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 ZNF157P51786 506 aaPredicted RBP6.52□□□□□ -1.37
USP54-216ENST00000498143 NOGQ13253 232 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 RALGAPBQ86X10 1494 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 SLC4A2P04920 1241 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 ATP6V1AP38606 617 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 PRIM1P49642 420 aaKnown RBP6.52□□□□□ -1.37
USP54-216ENST00000498143 SETQ01105 290 aaPredicted RBP6.52□□□□□ -1.37
USP54-216ENST00000498143 TTLL6Q8N841 843 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 DCPSQ96C86 337 aaKnown RBP6.52□□□□□ -1.37
USP54-216ENST00000498143 WDR70Q9NW82 654 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 NAP1L2Q9ULW6 460 aaPredicted RBP6.52□□□□□ -1.37
USP54-216ENST00000498143 RUSC2Q8N2Y8 1516 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 TMEM132EQ6IEE7 984 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 CTU1Q7Z7A3 348 aaKnown RBP6.52□□□□□ -1.37
USP54-216ENST00000498143 SULF1Q8IWU6 871 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 SPATA31A5Q5VU36 1347 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 SPATA31A7Q8IWB4 1347 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 ST5P78524 1137 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 LARGE2Q8N3Y3 721 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 TAOK3Q9H2K8 898 aa6.52□□□□□ -1.37
USP54-216ENST00000498143 OVOS2A0A0G2JMS6 1433 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms