RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 SCUBE2Q9NQ36 999 aa9.35□□□□□ -0.91
SYNE1-229ENST00000490866 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.35□□□□□ -0.91
SYNE1-229ENST00000490866 TMEM94Q12767 1356 aa9.35□□□□□ -0.91
SYNE1-229ENST00000490866 PARD3Q8TEW0 1356 aa9.35□□□□□ -0.91
SYNE1-229ENST00000490866 ACEP12821 1306 aa9.34□□□□□ -0.91
SYNE1-229ENST00000490866 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-229ENST00000490866 ESCO1Q5FWF5 840 aa9.34□□□□□ -0.91
SYNE1-229ENST00000490866 COG3Q96JB2 828 aa9.34□□□□□ -0.91
SYNE1-229ENST00000490866 FYB1O15117 783 aa9.33□□□□□ -0.92
SYNE1-229ENST00000490866 RGL2O15211 777 aa9.33□□□□□ -0.92
SYNE1-229ENST00000490866 NGEFQ8N5V2 710 aa9.33□□□□□ -0.92
SYNE1-229ENST00000490866 OTUD5Q96G74 571 aa9.33□□□□□ -0.92
SYNE1-229ENST00000490866 L3MBTL3Q96JM7 780 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-229ENST00000490866 SLAIN2Q9P270 581 aa9.33□□□□□ -0.92
SYNE1-229ENST00000490866 USP32Q8NFA0 1604 aa9.33□□□□□ -0.92
SYNE1-229ENST00000490866 A0A1W2PP64 1363 aa9.33□□□□□ -0.92
SYNE1-229ENST00000490866 INSRP06213 1382 aa9.33□□□□□ -0.92
SYNE1-229ENST00000490866 NPHP3Q7Z494 1330 aa9.32□□□□□ -0.92
SYNE1-229ENST00000490866 TOM1O60784 492 aa9.32□□□□□ -0.92
SYNE1-229ENST00000490866 CC2D1BQ5T0F9 858 aaKnown RBP9.32□□□□□ -0.92
SYNE1-229ENST00000490866 KCNH5Q8NCM2 988 aa9.32□□□□□ -0.92
SYNE1-229ENST00000490866 NUDCQ9Y266 331 aa9.32□□□□□ -0.92
SYNE1-229ENST00000490866 NSD3Q9BZ95 1437 aa9.31□□□□□ -0.92
SYNE1-229ENST00000490866 POTEJP0CG39 1038 aa9.31□□□□□ -0.92
SYNE1-229ENST00000490866 PDCD7Q8N8D1 485 aaKnown RBP9.31□□□□□ -0.92
SYNE1-229ENST00000490866 MRS2Q9HD23 443 aa9.31□□□□□ -0.92
SYNE1-229ENST00000490866 FMN2Q9NZ56 1722 aa9.31□□□□□ -0.92
SYNE1-229ENST00000490866 TTC21BQ7Z4L5 1316 aa9.31□□□□□ -0.92
SYNE1-229ENST00000490866 KIF24Q5T7B8 1368 aa9.3□□□□□ -0.92
SYNE1-229ENST00000490866 AATKQ6ZMQ8 1374 aa9.3□□□□□ -0.92
SYNE1-229ENST00000490866 LRRC7Q96NW7 1537 aa9.3□□□□□ -0.92
SYNE1-229ENST00000490866 USP6P35125 1406 aa9.3□□□□□ -0.92
SYNE1-229ENST00000490866 ZNF335Q9H4Z2 1342 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-229ENST00000490866 PRR36Q9H6K5 1346 aa9.3□□□□□ -0.92
SYNE1-229ENST00000490866 MYOM1P52179 1685 aa9.29□□□□□ -0.92
SYNE1-229ENST00000490866 IQSEC2Q5JU85 1478 aa9.29□□□□□ -0.92
SYNE1-229ENST00000490866 USP31Q70CQ4 1352 aa9.29□□□□□ -0.92
SYNE1-229ENST00000490866 STK25O00506 426 aa9.29□□□□□ -0.92
SYNE1-229ENST00000490866 PPP2R1AP30153 589 aa9.29□□□□□ -0.92
SYNE1-229ENST00000490866 EFCAB3Q8N7B9 438 aa9.29□□□□□ -0.92
SYNE1-229ENST00000490866 ABTB2Q8N961 1025 aa9.29□□□□□ -0.92
SYNE1-229ENST00000490866 BCL11BQ9C0K0 894 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-229ENST00000490866 KIF1AQ12756 1690 aa9.29□□□□□ -0.92
SYNE1-229ENST00000490866 C1orf167Q5SNV9 1468 aa9.28□□□□□ -0.92
SYNE1-229ENST00000490866 CD163L1Q9NR16 1453 aa9.28□□□□□ -0.92
SYNE1-229ENST00000490866 SBNO1A3KN83 1393 aa9.28□□□□□ -0.92
SYNE1-229ENST00000490866 PMFBP1Q8TBY8 1022 aa9.28□□□□□ -0.92
SYNE1-229ENST00000490866 STK24Q9Y6E0 443 aa9.28□□□□□ -0.92
SYNE1-229ENST00000490866 NEFMP07197 916 aa9.27□□□□□ -0.93
SYNE1-229ENST00000490866 CENPBP07199 599 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-229ENST00000490866 WDR43Q15061 677 aaKnown RBP eCLIP9.27□□□□□ -0.93
SYNE1-229ENST00000490866 KRT28Q7Z3Y7 464 aa9.27□□□□□ -0.93
SYNE1-229ENST00000490866 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.27□□□□□ -0.93
SYNE1-229ENST00000490866 PNISRQ8TF01 805 aaKnown RBP9.27□□□□□ -0.93
SYNE1-229ENST00000490866 MST1RQ04912 1400 aa9.27□□□□□ -0.93
SYNE1-229ENST00000490866 SSH2Q76I76 1423 aa9.27□□□□□ -0.93
SYNE1-229ENST00000490866 AKAP12Q02952 1782 aa9.27□□□□□ -0.93
SYNE1-229ENST00000490866 TOPAZ1Q8N9V7 1692 aa9.26□□□□□ -0.93
SYNE1-229ENST00000490866 ARHGEF10O15013 1369 aa9.26□□□□□ -0.93
SYNE1-229ENST00000490866 NALCNQ8IZF0 1738 aa9.26□□□□□ -0.93
SYNE1-229ENST00000490866 NUTM2FA1L443 756 aa9.26□□□□□ -0.93
SYNE1-229ENST00000490866 FOXO3O43524 673 aa9.26□□□□□ -0.93
SYNE1-229ENST00000490866 NLRP6P59044 892 aa9.26□□□□□ -0.93
SYNE1-229ENST00000490866 MTHFSP49914 203 aa9.25□□□□□ -0.93
SYNE1-229ENST00000490866 LRRC59Q96AG4 307 aaKnown RBP9.25□□□□□ -0.93
SYNE1-229ENST00000490866 GGNBP2Q9H3C7 697 aa9.25□□□□□ -0.93
SYNE1-229ENST00000490866 MON2Q7Z3U7 1717 aa9.25□□□□□ -0.93
SYNE1-229ENST00000490866 G3V3G9 751 aa9.24□□□□□ -0.93
SYNE1-229ENST00000490866 ORAI2Q96SN7 254 aa9.24□□□□□ -0.93
SYNE1-229ENST00000490866 STRCP1A6NGW2 1772 aa9.23□□□□□ -0.93
SYNE1-229ENST00000490866 DIAPH1O60610 1272 aaKnown RBP9.23□□□□□ -0.93
SYNE1-229ENST00000490866 HS6ST3Q8IZP7 471 aa9.23□□□□□ -0.93
SYNE1-229ENST00000490866 RBM33Q96EV2 1170 aaKnown RBP9.23□□□□□ -0.93
SYNE1-229ENST00000490866 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.23□□□□□ -0.93
SYNE1-229ENST00000490866 PNPLA6Q8IY17 1366 aa9.23□□□□□ -0.93
SYNE1-229ENST00000490866 ANKRD26Q9UPS8 1709 aa9.22□□□□□ -0.93
SYNE1-229ENST00000490866 RGPD8O14715 1765 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-229ENST00000490866 FCHSD2O94868 740 aa9.22□□□□□ -0.93
SYNE1-229ENST00000490866 PDE3BQ13370 1112 aa9.22□□□□□ -0.93
SYNE1-229ENST00000490866 BRINP3Q76B58 766 aa9.22□□□□□ -0.93
SYNE1-229ENST00000490866 NME9Q86XW9 330 aa9.22□□□□□ -0.93
SYNE1-229ENST00000490866 POLKQ9UBT6 870 aa9.22□□□□□ -0.93
SYNE1-229ENST00000490866 SOS2Q07890 1332 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-229ENST00000490866 KIF20BQ96Q89 1820 aa9.21□□□□□ -0.93
SYNE1-229ENST00000490866 LTBP4Q8N2S1 1624 aa9.21□□□□□ -0.93
SYNE1-229ENST00000490866 FAM9BQ8IZU0 186 aa9.21□□□□□ -0.94
SYNE1-229ENST00000490866 BOLA1Q9Y3E2 137 aa9.21□□□□□ -0.94
SYNE1-229ENST00000490866 SPATA31A3Q5VYP0 1347 aa9.21□□□□□ -0.94
SYNE1-229ENST00000490866 GCP02774 474 aa9.2□□□□□ -0.94
SYNE1-229ENST00000490866 AMPHP49418 695 aa9.2□□□□□ -0.94
SYNE1-229ENST00000490866 RTL1A6NKG5 1358 aa9.2□□□□□ -0.94
SYNE1-229ENST00000490866 TNNT2P45379 298 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-229ENST00000490866 CNGB1Q14028 1251 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-229ENST00000490866 C3orf67Q6ZVT6 689 aa9.19□□□□□ -0.94
SYNE1-229ENST00000490866 CERKQ8TCT0 537 aa9.19□□□□□ -0.94
SYNE1-229ENST00000490866 TMEM121BQ9BXQ6 578 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-229ENST00000490866 FLT4P35916 1363 aa9.19□□□□□ -0.94
SYNE1-229ENST00000490866 OVOS2A0A0J9YW53 1432 aa9.19□□□□□ -0.94
SYNE1-229ENST00000490866 OVOS2Q6IE36 1432 aa9.19□□□□□ -0.94
SYNE1-229ENST00000490866 LMOD2Q6P5Q4 547 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms