RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 MAPK8IP3Q9UPT6 1336 aa12.41□□□□□ -0.42
SF3B1-211ENST00000487698 PXDNQ92626 1479 aa12.41□□□□□ -0.42
SF3B1-211ENST00000487698 CRYBG1Q9Y4K1 1723 aa12.4□□□□□ -0.42
SF3B1-211ENST00000487698 E9PSI1 815 aa12.4□□□□□ -0.42
SF3B1-211ENST00000487698 SOX12O15370 315 aa12.4□□□□□ -0.42
SF3B1-211ENST00000487698 TMPOP42166 694 aaKnown RBP12.4□□□□□ -0.42
SF3B1-211ENST00000487698 HSP90AB2PQ58FF8 381 aa12.4□□□□□ -0.42
SF3B1-211ENST00000487698 RCAN3Q9UKA8 241 aa12.4□□□□□ -0.42
SF3B1-211ENST00000487698 PRKAR2BP31323 418 aa12.4□□□□□ -0.43
SF3B1-211ENST00000487698 WDR63Q8IWG1 891 aa12.4□□□□□ -0.43
SF3B1-211ENST00000487698 USP19O94966 1318 aa12.4□□□□□ -0.43
SF3B1-211ENST00000487698 ARHGEF10O15013 1369 aa12.39□□□□□ -0.43
SF3B1-211ENST00000487698 NEUROD2Q15784 382 aa12.39□□□□□ -0.43
SF3B1-211ENST00000487698 KRT28Q7Z3Y7 464 aa12.39□□□□□ -0.43
SF3B1-211ENST00000487698 MED1Q15648 1581 aaPredicted RBP12.39□□□□□ -0.43
SF3B1-211ENST00000487698 HMOX1P09601 288 aa12.38□□□□□ -0.43
SF3B1-211ENST00000487698 XPCQ01831 940 aaPredicted RBP12.38□□□□□ -0.43
SF3B1-211ENST00000487698 ERICH6BQ5W0A0 696 aa12.38□□□□□ -0.43
SF3B1-211ENST00000487698 TRIM35Q9UPQ4 493 aa12.38□□□□□ -0.43
SF3B1-211ENST00000487698 KDRP35968 1356 aa12.37□□□□□ -0.43
SF3B1-211ENST00000487698 HOXC9P31274 260 aa12.37□□□□□ -0.43
SF3B1-211ENST00000487698 NPHP3Q7Z494 1330 aa12.37□□□□□ -0.43
SF3B1-211ENST00000487698 AMPHP49418 695 aa12.37□□□□□ -0.43
SF3B1-211ENST00000487698 IRX6P78412 446 aaPredicted RBP12.37□□□□□ -0.43
SF3B1-211ENST00000487698 KCNH5Q8NCM2 988 aa12.37□□□□□ -0.43
SF3B1-211ENST00000487698 PHACTR3Q96KR7 559 aa12.37□□□□□ -0.43
SF3B1-211ENST00000487698 IGSF1Q8N6C5 1336 aa12.36□□□□□ -0.43
SF3B1-211ENST00000487698 RRP1P56182 461 aaKnown RBP12.36□□□□□ -0.43
SF3B1-211ENST00000487698 TNS3Q68CZ2 1445 aa12.36□□□□□ -0.43
SF3B1-211ENST00000487698 NHSL1Q5SYE7 1610 aa12.36□□□□□ -0.43
SF3B1-211ENST00000487698 NFE2L2Q16236 605 aa12.35□□□□□ -0.43
SF3B1-211ENST00000487698 AEBP1Q8IUX7 1158 aa12.35□□□□□ -0.43
SF3B1-211ENST00000487698 RIPK4P57078 832 aa12.35□□□□□ -0.43
SF3B1-211ENST00000487698 BRINP3Q76B58 766 aa12.35□□□□□ -0.43
SF3B1-211ENST00000487698 RGPD2P0DJD1 1756 aa12.35□□□□□ -0.43
SF3B1-211ENST00000487698 CAMTA1Q9Y6Y1 1673 aa12.35□□□□□ -0.43
SF3B1-211ENST00000487698 IL16Q14005 1332 aa12.34□□□□□ -0.43
SF3B1-211ENST00000487698 LTBP4Q8N2S1 1624 aa12.34□□□□□ -0.43
SF3B1-211ENST00000487698 NEFMP07197 916 aa12.34□□□□□ -0.43
SF3B1-211ENST00000487698 SULT6B1Q6IMI4 303 aa12.34□□□□□ -0.43
SF3B1-211ENST00000487698 RGPD5Q99666 1765 aa12.34□□□□□ -0.43
SF3B1-211ENST00000487698 GCP02774 474 aa12.34□□□□□ -0.43
SF3B1-211ENST00000487698 IP6K1Q92551 441 aa12.34□□□□□ -0.43
SF3B1-211ENST00000487698 DDX17Q92841 729 aaKnown RBP12.34□□□□□ -0.43
SF3B1-211ENST00000487698 COL18A1P39060 1754 aa12.33□□□□□ -0.44
SF3B1-211ENST00000487698 ARHGEF25Q86VW2 580 aa12.32□□□□□ -0.44
SF3B1-211ENST00000487698 EYA1Q99502 592 aa12.32□□□□□ -0.44
SF3B1-211ENST00000487698 SLAIN2Q9P270 581 aa12.32□□□□□ -0.44
SF3B1-211ENST00000487698 ABCC6O95255 1503 aa12.32□□□□□ -0.44
SF3B1-211ENST00000487698 ABCA3Q99758 1704 aa12.32□□□□□ -0.44
SF3B1-211ENST00000487698 MYH16Q9H6N6 1097 aa12.32□□□□□ -0.44
SF3B1-211ENST00000487698 SPATA31A3Q5VYP0 1347 aa12.32□□□□□ -0.44
SF3B1-211ENST00000487698 NCAPD2Q15021 1401 aa12.31□□□□□ -0.44
SF3B1-211ENST00000487698 LMO7Q8WWI1 1683 aa12.31□□□□□ -0.44
SF3B1-211ENST00000487698 LMOD2Q6P5Q4 547 aa12.31□□□□□ -0.44
SF3B1-211ENST00000487698 FANCIQ9NVI1 1328 aa12.3□□□□□ -0.44
SF3B1-211ENST00000487698 SOS2Q07890 1332 aaPredicted RBP12.3□□□□□ -0.44
SF3B1-211ENST00000487698 LRRC37A3O60309 1634 aa12.3□□□□□ -0.44
SF3B1-211ENST00000487698 LMOD3Q0VAK6 560 aa12.29□□□□□ -0.44
SF3B1-211ENST00000487698 FAM208AQ9UK61 1670 aaKnown RBP12.29□□□□□ -0.44
SF3B1-211ENST00000487698 PPP4R2Q9NY27 417 aa12.28□□□□□ -0.44
SF3B1-211ENST00000487698 TSR2Q969E8 191 aaKnown RBP12.28□□□□□ -0.44
SF3B1-211ENST00000487698 ROBO1Q9Y6N7 1651 aa12.27□□□□□ -0.44
SF3B1-211ENST00000487698 CALD1Q05682 793 aaKnown RBP12.27□□□□□ -0.45
SF3B1-211ENST00000487698 PLIN1O60240 522 aa12.26□□□□□ -0.45
SF3B1-211ENST00000487698 CT47B1P0C2W7 299 aaPredicted RBP12.26□□□□□ -0.45
SF3B1-211ENST00000487698 ZNF853P0CG23 659 aa12.26□□□□□ -0.45
SF3B1-211ENST00000487698 LTV1Q96GA3 475 aaPredicted RBP12.26□□□□□ -0.45
SF3B1-211ENST00000487698 CPDO75976 1380 aa12.26□□□□□ -0.45
SF3B1-211ENST00000487698 THUMPD2Q9BTF0 503 aaKnown RBP12.26□□□□□ -0.45
SF3B1-211ENST00000487698 AHDC1Q5TGY3 1603 aaPredicted RBP12.25□□□□□ -0.45
SF3B1-211ENST00000487698 FAM83GA6ND36 823 aa12.25□□□□□ -0.45
SF3B1-211ENST00000487698 MTHFSDQ2M296 383 aaKnown RBP12.25□□□□□ -0.45
SF3B1-211ENST00000487698 NBPF6Q5VWK0 638 aa12.25□□□□□ -0.45
SF3B1-211ENST00000487698 NBPF4Q96M43 638 aa12.25□□□□□ -0.45
SF3B1-211ENST00000487698 IFT57Q9NWB7 429 aa12.25□□□□□ -0.45
SF3B1-211ENST00000487698 AXIN2Q9Y2T1 843 aa12.25□□□□□ -0.45
SF3B1-211ENST00000487698 BCAR3O75815 825 aa12.25□□□□□ -0.45
SF3B1-211ENST00000487698 RARSP54136 660 aaKnown RBP12.25□□□□□ -0.45
SF3B1-211ENST00000487698 VIRMAQ69YN4 1812 aaKnown RBP12.24□□□□□ -0.45
SF3B1-211ENST00000487698 ZBTB7CA1YPR0 619 aa12.24□□□□□ -0.45
SF3B1-211ENST00000487698 ERBB3P21860 1342 aa12.24□□□□□ -0.45
SF3B1-211ENST00000487698 GNAI1P63096 354 aa12.24□□□□□ -0.45
SF3B1-211ENST00000487698 EXOSC9Q06265 439 aaKnown RBP12.24□□□□□ -0.45
SF3B1-211ENST00000487698 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.24□□□□□ -0.45
SF3B1-211ENST00000487698 GAS2L2Q8NHY3 880 aa12.24□□□□□ -0.45
SF3B1-211ENST00000487698 CRB1P82279 1406 aa12.23□□□□□ -0.45
SF3B1-211ENST00000487698 PLEKHG5O94827 1062 aa12.23□□□□□ -0.45
SF3B1-211ENST00000487698 ZC3H6P61129 1189 aaKnown RBP12.23□□□□□ -0.45
SF3B1-211ENST00000487698 USHBP1Q8N6Y0 703 aa12.23□□□□□ -0.45
SF3B1-211ENST00000487698 CABLES1Q8TDN4 633 aa12.23□□□□□ -0.45
SF3B1-211ENST00000487698 ANKRD24Q8TF21 1146 aa12.23□□□□□ -0.45
SF3B1-211ENST00000487698 CFAP44Q96MT7 982 aa12.23□□□□□ -0.45
SF3B1-211ENST00000487698 EXOC6Q8TAG9 804 aa12.23□□□□□ -0.45
SF3B1-211ENST00000487698 LRRC59Q96AG4 307 aaKnown RBP12.23□□□□□ -0.45
SF3B1-211ENST00000487698 DCTN1Q14203 1278 aa12.22□□□□□ -0.45
SF3B1-211ENST00000487698 C20orf194Q5TEA3 1177 aa12.22□□□□□ -0.45
SF3B1-211ENST00000487698 COL22A1Q8NFW1 1626 aaPredicted RBP12.22□□□□□ -0.45
SF3B1-211ENST00000487698 KIAA0232Q92628 1395 aa12.22□□□□□ -0.45
SF3B1-211ENST00000487698 MBIPQ9NS73 344 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms