RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 CALD1Q05682 793 aaKnown RBP15.69■□□□□ 0.1
PTPRF-212ENST00000477970 ZKSCAN2Q63HK3 967 aa15.69■□□□□ 0.1
PTPRF-212ENST00000477970 PANK1Q8TE04 598 aa15.69■□□□□ 0.1
PTPRF-212ENST00000477970 COG3Q96JB2 828 aa15.69■□□□□ 0.1
PTPRF-212ENST00000477970 USP6P35125 1406 aa15.69■□□□□ 0.1
PTPRF-212ENST00000477970 USP31Q70CQ4 1352 aa15.68■□□□□ 0.1
PTPRF-212ENST00000477970 TOM1O60784 492 aa15.68■□□□□ 0.1
PTPRF-212ENST00000477970 ALDH1L2Q3SY69 923 aa15.68■□□□□ 0.1
PTPRF-212ENST00000477970 COG6Q9Y2V7 657 aa15.68■□□□□ 0.1
PTPRF-212ENST00000477970 NFE2L2Q16236 605 aa15.68■□□□□ 0.1
PTPRF-212ENST00000477970 NME9Q86XW9 330 aa15.68■□□□□ 0.1
PTPRF-212ENST00000477970 IGHDP01880 384 aa15.68■□□□□ 0.1
PTPRF-212ENST00000477970 AMOTL2Q9Y2J4 779 aa15.68■□□□□ 0.1
PTPRF-212ENST00000477970 ROBO1Q9Y6N7 1651 aa15.67■□□□□ 0.1
PTPRF-212ENST00000477970 MVPQ14764 893 aaKnown RBP15.67■□□□□ 0.1
PTPRF-212ENST00000477970 ADGRL3Q9HAR2 1447 aa15.67■□□□□ 0.1
PTPRF-212ENST00000477970 NEFMP07197 916 aa15.67■□□□□ 0.1
PTPRF-212ENST00000477970 C8orf34Q49A92 452 aa15.67■□□□□ 0.1
PTPRF-212ENST00000477970 PROSER2Q86WR7 435 aaPredicted RBP15.67■□□□□ 0.1
PTPRF-212ENST00000477970 FMN2Q9NZ56 1722 aa15.67■□□□□ 0.1
PTPRF-212ENST00000477970 EXOSC9Q06265 439 aaKnown RBP15.66■□□□□ 0.1
PTPRF-212ENST00000477970 ZBTB47Q9UFB7 747 aaPredicted RBP15.66■□□□□ 0.1
PTPRF-212ENST00000477970 MSH6P52701 1360 aa15.66■□□□□ 0.1
PTPRF-212ENST00000477970 RLBP1P12271 317 aa15.66■□□□□ 0.1
PTPRF-212ENST00000477970 FRAT1Q92837 279 aaPredicted RBP15.66■□□□□ 0.1
PTPRF-212ENST00000477970 PRKAR2BP31323 418 aa15.66■□□□□ 0.1
PTPRF-212ENST00000477970 DDRGK1Q96HY6 314 aa15.66■□□□□ 0.1
PTPRF-212ENST00000477970 KIF16BQ96L93 1317 aa15.65■□□□□ 0.1
PTPRF-212ENST00000477970 ANKARQ7Z5J8 1434 aa15.65■□□□□ 0.1
PTPRF-212ENST00000477970 PEAK1Q9H792 1746 aa15.65■□□□□ 0.1
PTPRF-212ENST00000477970 UBAP1LF5GYI3 381 aa15.65■□□□□ 0.1
PTPRF-212ENST00000477970 TTC21BQ7Z4L5 1316 aa15.65■□□□□ 0.1
PTPRF-212ENST00000477970 DZIP1LQ8IYY4 767 aaKnown RBP15.65■□□□□ 0.1
PTPRF-212ENST00000477970 TSR2Q969E8 191 aaKnown RBP15.65■□□□□ 0.1
PTPRF-212ENST00000477970 TTC21AQ8NDW8 1320 aa15.64■□□□□ 0.09
PTPRF-212ENST00000477970 LMOD3Q0VAK6 560 aa15.64■□□□□ 0.09
PTPRF-212ENST00000477970 EMILIN1Q9Y6C2 1016 aa15.64■□□□□ 0.09
PTPRF-212ENST00000477970 NHSL1Q5SYE7 1610 aa15.64■□□□□ 0.09
PTPRF-212ENST00000477970 IFT57Q9NWB7 429 aa15.63■□□□□ 0.09
PTPRF-212ENST00000477970 AHDC1Q5TGY3 1603 aaPredicted RBP15.63■□□□□ 0.09
PTPRF-212ENST00000477970 ZNF853P0CG23 659 aa15.63■□□□□ 0.09
PTPRF-212ENST00000477970 PAK3O75914 559 aaPredicted RBP15.63■□□□□ 0.09
PTPRF-212ENST00000477970 SSH1Q8WYL5 1049 aa15.62■□□□□ 0.09
PTPRF-212ENST00000477970 SMC4Q9NTJ3 1288 aa15.62■□□□□ 0.09
PTPRF-212ENST00000477970 ACEP12821 1306 aa15.62■□□□□ 0.09
PTPRF-212ENST00000477970 ATF7IPQ6VMQ6 1270 aa15.62■□□□□ 0.09
PTPRF-212ENST00000477970 RWDD1Q9H446 243 aaPredicted RBP15.62■□□□□ 0.09
PTPRF-212ENST00000477970 SKAP1Q86WV1 359 aa15.61■□□□□ 0.09
PTPRF-212ENST00000477970 DDX19BQ9UMR2 479 aa15.61■□□□□ 0.09
PTPRF-212ENST00000477970 IPO8O15397 1037 aaKnown RBP15.61■□□□□ 0.09
PTPRF-212ENST00000477970 PCDHB15Q9Y5E8 787 aa15.61■□□□□ 0.09
PTPRF-212ENST00000477970 GNAI1P63096 354 aa15.61■□□□□ 0.09
PTPRF-212ENST00000477970 TRIM27P14373 513 aa15.6■□□□□ 0.09
PTPRF-212ENST00000477970 C19orf44Q9H6X5 657 aa15.6■□□□□ 0.09
PTPRF-212ENST00000477970 MARF1Q9Y4F3 1742 aaKnown RBP15.6■□□□□ 0.09
PTPRF-212ENST00000477970 HDAC1Q13547 482 aaPredicted RBP15.6■□□□□ 0.09
PTPRF-212ENST00000477970 ARHGAP45Q92619 1136 aa15.6■□□□□ 0.09
PTPRF-212ENST00000477970 ZRANB1Q9UGI0 708 aa15.6■□□□□ 0.09
PTPRF-212ENST00000477970 PIK3C2AO00443 1686 aa15.6■□□□□ 0.09
PTPRF-212ENST00000477970 PHLPP1O60346 1717 aa15.6■□□□□ 0.09
PTPRF-212ENST00000477970 FTSJ3Q8IY81 847 aaKnown RBP15.6■□□□□ 0.09
PTPRF-212ENST00000477970 PHACTR3Q96KR7 559 aa15.6■□□□□ 0.09
PTPRF-212ENST00000477970 TNNQ9UQP3 1299 aa15.6■□□□□ 0.09
PTPRF-212ENST00000477970 RGPD8O14715 1765 aaPredicted RBP15.59■□□□□ 0.09
PTPRF-212ENST00000477970 BCL2L13Q9BXK5 485 aa15.59■□□□□ 0.09
PTPRF-212ENST00000477970 MST1RQ04912 1400 aa15.59■□□□□ 0.09
PTPRF-212ENST00000477970 ARHGEF10O15013 1369 aa15.58■□□□□ 0.08
PTPRF-212ENST00000477970 KIF24Q5T7B8 1368 aa15.58■□□□□ 0.08
PTPRF-212ENST00000477970 COL16A1Q07092 1604 aaPredicted RBP15.58■□□□□ 0.08
PTPRF-212ENST00000477970 PPM1GO15355 546 aaPredicted RBP15.57■□□□□ 0.08
PTPRF-212ENST00000477970 FBLN1P23142 703 aa15.57■□□□□ 0.08
PTPRF-212ENST00000477970 KIF1AQ12756 1690 aa15.57■□□□□ 0.08
PTPRF-212ENST00000477970 CADPS2Q86UW7 1296 aa15.57■□□□□ 0.08
PTPRF-212ENST00000477970 CFAP44Q96MT7 982 aa15.56■□□□□ 0.08
PTPRF-212ENST00000477970 NOB1Q9ULX3 412 aaKnown RBP15.56■□□□□ 0.08
PTPRF-212ENST00000477970 HMOX1P09601 288 aa15.56■□□□□ 0.08
PTPRF-212ENST00000477970 RGS3P49796 1198 aa15.56■□□□□ 0.08
PTPRF-212ENST00000477970 CHMP4BQ9H444 224 aaKnown RBP15.56■□□□□ 0.08
PTPRF-212ENST00000477970 RRS1Q15050 365 aaKnown RBP15.55■□□□□ 0.08
PTPRF-212ENST00000477970 VAMP4O75379 141 aa15.55■□□□□ 0.08
PTPRF-212ENST00000477970 EIF4A2Q14240 407 aaKnown RBP15.55■□□□□ 0.08
PTPRF-212ENST00000477970 NPM2Q86SE8 214 aaKnown RBP15.55■□□□□ 0.08
PTPRF-212ENST00000477970 SBNO1A3KN83 1393 aa15.55■□□□□ 0.08
PTPRF-212ENST00000477970 ZBTB40Q9NUA8 1239 aa15.54■□□□□ 0.08
PTPRF-212ENST00000477970 MRPL50Q8N5N7 158 aaKnown RBP15.53■□□□□ 0.08
PTPRF-212ENST00000477970 LRRC37A3O60309 1634 aa15.53■□□□□ 0.08
PTPRF-212ENST00000477970 KDRP35968 1356 aa15.53■□□□□ 0.08
PTPRF-212ENST00000477970 SLAIN2Q9P270 581 aa15.53■□□□□ 0.08
PTPRF-212ENST00000477970 PDZRN3Q9UPQ7 1066 aa15.53■□□□□ 0.08
PTPRF-212ENST00000477970 FLT4P35916 1363 aa15.52■□□□□ 0.08
PTPRF-212ENST00000477970 MBIPQ9NS73 344 aa15.52■□□□□ 0.08
PTPRF-212ENST00000477970 SMC5Q8IY18 1101 aa15.52■□□□□ 0.07
PTPRF-212ENST00000477970 KIAA0232Q92628 1395 aa15.52■□□□□ 0.07
PTPRF-212ENST00000477970 HAP1P54257 671 aaPredicted RBP15.51■□□□□ 0.07
PTPRF-212ENST00000477970 TMEM57Q8N5G2 664 aa15.51■□□□□ 0.07
PTPRF-212ENST00000477970 C1orf167Q5SNV9 1468 aa15.51■□□□□ 0.07
PTPRF-212ENST00000477970 ABCC4O15439 1325 aa15.51■□□□□ 0.07
PTPRF-212ENST00000477970 ATF3P18847 181 aa15.51■□□□□ 0.07
PTPRF-212ENST00000477970 PHRF1Q9P1Y6 1649 aaKnown RBP15.5■□□□□ 0.07
PTPRF-212ENST00000477970 ITPRIPQ8IWB1 547 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms