RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 SPATA31D1Q6ZQQ2 1576 aa22.77■■□□□ 1.24
CCM2-209ENST00000477605 SIRT1Q96EB6 747 aa22.76■■□□□ 1.23
CCM2-209ENST00000477605 LMOD3Q0VAK6 560 aa22.75■■□□□ 1.23
CCM2-209ENST00000477605 BRPF3Q9ULD4 1205 aa22.75■■□□□ 1.23
CCM2-209ENST00000477605 CDK12Q9NYV4 1490 aaPredicted RBP22.75■■□□□ 1.23
CCM2-209ENST00000477605 GCC1Q96CN9 775 aa22.75■■□□□ 1.23
CCM2-209ENST00000477605 PTCH1Q13635 1447 aa22.74■■□□□ 1.23
CCM2-209ENST00000477605 VAMP4O75379 141 aa22.74■■□□□ 1.23
CCM2-209ENST00000477605 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.74■■□□□ 1.23
CCM2-209ENST00000477605 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.74■■□□□ 1.23
CCM2-209ENST00000477605 ZNF853P0CG23 659 aa22.73■■□□□ 1.23
CCM2-209ENST00000477605 IL13P35225 146 aa22.73■■□□□ 1.23
CCM2-209ENST00000477605 MFAP1P55081 439 aaKnown RBP22.73■■□□□ 1.23
CCM2-209ENST00000477605 CHD1LQ86WJ1 897 aa22.73■■□□□ 1.23
CCM2-209ENST00000477605 MRPL50Q8N5N7 158 aaKnown RBP22.73■■□□□ 1.23
CCM2-209ENST00000477605 CHMP5Q9NZZ3 219 aa22.73■■□□□ 1.23
CCM2-209ENST00000477605 WASLO00401 505 aaPredicted RBP22.72■■□□□ 1.23
CCM2-209ENST00000477605 ZBTB7BO15156 539 aaPredicted RBP22.72■■□□□ 1.23
CCM2-209ENST00000477605 RBM25P49756 843 aaKnown RBP22.72■■□□□ 1.23
CCM2-209ENST00000477605 WAPLQ7Z5K2 1190 aa22.72■■□□□ 1.23
CCM2-209ENST00000477605 NCKAP5LQ9HCH0 1330 aa22.71■■□□□ 1.23
CCM2-209ENST00000477605 SENP3Q9H4L4 574 aaPredicted RBP22.71■■□□□ 1.23
CCM2-209ENST00000477605 SETD1AO15047 1707 aaKnown RBP22.71■■□□□ 1.23
CCM2-209ENST00000477605 BMP2KLQ5H9B9 411 aa22.7■■□□□ 1.23
CCM2-209ENST00000477605 L1TD1Q5T7N2 865 aaKnown RBP22.7■■□□□ 1.23
CCM2-209ENST00000477605 ILDR1Q86SU0 546 aaPredicted RBP22.7■■□□□ 1.23
CCM2-209ENST00000477605 PHACTR3Q96KR7 559 aa22.7■■□□□ 1.22
CCM2-209ENST00000477605 KIF24Q5T7B8 1368 aa22.69■■□□□ 1.22
CCM2-209ENST00000477605 SNX21Q969T3 373 aa22.69■■□□□ 1.22
CCM2-209ENST00000477605 HSCBQ8IWL3 235 aa22.69■■□□□ 1.22
CCM2-209ENST00000477605 ABCC4O15439 1325 aa22.68■■□□□ 1.22
CCM2-209ENST00000477605 EIF5BO60841 1220 aaKnown RBP22.68■■□□□ 1.22
CCM2-209ENST00000477605 CFAP44Q96MT7 982 aa22.67■■□□□ 1.22
CCM2-209ENST00000477605 API5Q9BZZ5 524 aaKnown RBP22.67■■□□□ 1.22
CCM2-209ENST00000477605 MCM4P33991 863 aa22.66■■□□□ 1.22
CCM2-209ENST00000477605 HDGFP51858 240 aaKnown RBP22.66■■□□□ 1.22
CCM2-209ENST00000477605 TECPR2O15040 1411 aa22.66■■□□□ 1.22
CCM2-209ENST00000477605 HMOX1P09601 288 aa22.66■■□□□ 1.22
CCM2-209ENST00000477605 COG3Q96JB2 828 aa22.66■■□□□ 1.22
CCM2-209ENST00000477605 ZNF692Q9BU19 519 aaPredicted RBP22.66■■□□□ 1.22
CCM2-209ENST00000477605 EMILIN1Q9Y6C2 1016 aa22.66■■□□□ 1.22
CCM2-209ENST00000477605 LNPKQ9C0E8 428 aa22.65■■□□□ 1.22
CCM2-209ENST00000477605 MBIPQ9NS73 344 aa22.65■■□□□ 1.22
CCM2-209ENST00000477605 CCDC61Q9Y6R9 512 aa22.65■■□□□ 1.22
CCM2-209ENST00000477605 NCOA3Q9Y6Q9 1424 aa22.64■■□□□ 1.21
CCM2-209ENST00000477605 HAP1P54257 671 aaPredicted RBP22.64■■□□□ 1.21
CCM2-209ENST00000477605 THEMISQ8N1K5 641 aaPredicted RBP22.64■■□□□ 1.21
CCM2-209ENST00000477605 TWISTNBQ3B726 338 aaPredicted RBP22.63■■□□□ 1.21
CCM2-209ENST00000477605 NME9Q86XW9 330 aa22.63■■□□□ 1.21
CCM2-209ENST00000477605 NUDT16Q96DE0 195 aaKnown RBP22.63■■□□□ 1.21
CCM2-209ENST00000477605 RTN4Q9NQC3 1192 aaKnown RBP22.62■■□□□ 1.21
CCM2-209ENST00000477605 MAP2P11137 1827 aaKnown RBP22.62■■□□□ 1.21
CCM2-209ENST00000477605 FBLN1P23142 703 aa22.62■■□□□ 1.21
CCM2-209ENST00000477605 TSPYL6Q8N831 410 aa22.62■■□□□ 1.21
CCM2-209ENST00000477605 ANKRD45Q5TZF3 282 aa22.61■■□□□ 1.21
CCM2-209ENST00000477605 CERKQ8TCT0 537 aa22.61■■□□□ 1.21
CCM2-209ENST00000477605 CIZ1Q9ULV3 898 aaPredicted RBP22.61■■□□□ 1.21
CCM2-209ENST00000477605 NRXN3Q9Y4C0 1643 aa22.61■■□□□ 1.21
CCM2-209ENST00000477605 FAM43AQ8N2R8 423 aa22.61■■□□□ 1.21
CCM2-209ENST00000477605 THUMPD2Q9BTF0 503 aaKnown RBP22.6■■□□□ 1.21
CCM2-209ENST00000477605 KNDC1Q76NI1 1749 aa22.6■■□□□ 1.21
CCM2-209ENST00000477605 METP08581 1390 aa22.6■■□□□ 1.21
CCM2-209ENST00000477605 DDIT3P35638 169 aa22.59■■□□□ 1.21
CCM2-209ENST00000477605 FBXO41Q8TF61 875 aa22.59■■□□□ 1.21
CCM2-209ENST00000477605 DDX11L8A8MPP1 907 aa22.58■■□□□ 1.21
CCM2-209ENST00000477605 MON2Q7Z3U7 1717 aa22.58■■□□□ 1.21
CCM2-209ENST00000477605 ANKLE2Q86XL3 938 aa22.57■■□□□ 1.2
CCM2-209ENST00000477605 CPS1P31327 1500 aa22.57■■□□□ 1.2
CCM2-209ENST00000477605 UBR1Q8IWV7 1749 aa22.57■■□□□ 1.2
CCM2-209ENST00000477605 LTBP4Q8N2S1 1624 aa22.56■■□□□ 1.2
CCM2-209ENST00000477605 SIRT2Q8IXJ6 389 aa22.56■■□□□ 1.2
CCM2-209ENST00000477605 C8orf58Q8NAV2 365 aa22.56■■□□□ 1.2
CCM2-209ENST00000477605 FSD2A1L4K1 749 aa22.55■■□□□ 1.2
CCM2-209ENST00000477605 TXNDC2Q86VQ3 553 aa22.55■■□□□ 1.2
CCM2-209ENST00000477605 SPRYD3Q8NCJ5 442 aa22.55■■□□□ 1.2
CCM2-209ENST00000477605 INTS3Q68E01 1043 aaKnown RBP22.54■■□□□ 1.2
CCM2-209ENST00000477605 ZRANB1Q9UGI0 708 aa22.54■■□□□ 1.2
CCM2-209ENST00000477605 NRKQ7Z2Y5 1582 aa22.53■■□□□ 1.2
CCM2-209ENST00000477605 GOLGA6L3A6NEY3 463 aa22.53■■□□□ 1.2
CCM2-209ENST00000477605 PTMSP20962 102 aa22.53■■□□□ 1.2
CCM2-209ENST00000477605 ISY1Q9ULR0 285 aaKnown RBP22.53■■□□□ 1.2
CCM2-209ENST00000477605 TRAK2O60296 914 aa22.53■■□□□ 1.2
CCM2-209ENST00000477605 ZNF335Q9H4Z2 1342 aaPredicted RBP22.52■■□□□ 1.2
CCM2-209ENST00000477605 AKAP12Q02952 1782 aa22.52■■□□□ 1.2
CCM2-209ENST00000477605 KIAA0232Q92628 1395 aa22.52■■□□□ 1.2
CCM2-209ENST00000477605 ELL2O00472 640 aaPredicted RBP22.51■■□□□ 1.19
CCM2-209ENST00000477605 CDC45O75419 566 aa22.51■■□□□ 1.19
CCM2-209ENST00000477605 TBC1D9Q6ZT07 1266 aa22.51■■□□□ 1.19
CCM2-209ENST00000477605 DCTPP1Q9H773 170 aa22.51■■□□□ 1.19
CCM2-209ENST00000477605 RRS1Q15050 365 aaKnown RBP22.51■■□□□ 1.19
CCM2-209ENST00000477605 C1orf115Q9H7X2 142 aa22.51■■□□□ 1.19
CCM2-209ENST00000477605 HSP90AB1P08238 724 aaKnown RBP22.5■■□□□ 1.19
CCM2-209ENST00000477605 KIF2CQ99661 725 aa22.5■■□□□ 1.19
CCM2-209ENST00000477605 NPHP4O75161 1426 aaPredicted RBP22.49■■□□□ 1.19
CCM2-209ENST00000477605 CHL1O00533 1208 aa22.49■■□□□ 1.19
CCM2-209ENST00000477605 RPAP2Q8IXW5 612 aaPredicted RBP22.49■■□□□ 1.19
CCM2-209ENST00000477605 ARHGAP23Q9P227 1491 aa22.48■■□□□ 1.19
CCM2-209ENST00000477605 SLIT1O75093 1534 aa22.48■■□□□ 1.19
CCM2-209ENST00000477605 PLEKHG3A1L390 1219 aa22.48■■□□□ 1.19
CCM2-209ENST00000477605 GBP4Q96PP9 640 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms