RNA–Protein interactions for RNA: ENST00000477537.1

HLA-DMB-260, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,919 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-260ENST00000477537 AAMPQ13685 434 aa14.15□□□□□ -0.14
HLA-DMB-260ENST00000477537 PTCH1Q13635 1447 aa14.15□□□□□ -0.14
HLA-DMB-260ENST00000477537 RGS3P49796 1198 aa14.15□□□□□ -0.14
HLA-DMB-260ENST00000477537 USP6P35125 1406 aa14.15□□□□□ -0.14
HLA-DMB-260ENST00000477537 SSH1Q8WYL5 1049 aa14.14□□□□□ -0.15
HLA-DMB-260ENST00000477537 FTSJ3Q8IY81 847 aaKnown RBP14.13□□□□□ -0.15
HLA-DMB-260ENST00000477537 OVOS2A0A0J9YW53 1432 aa14.13□□□□□ -0.15
HLA-DMB-260ENST00000477537 OVOS2Q6IE36 1432 aa14.13□□□□□ -0.15
HLA-DMB-260ENST00000477537 PAK3O75914 559 aaPredicted RBP14.13□□□□□ -0.15
HLA-DMB-260ENST00000477537 MVPQ14764 893 aaKnown RBP14.13□□□□□ -0.15
HLA-DMB-260ENST00000477537 DZIP1LQ8IYY4 767 aaKnown RBP14.13□□□□□ -0.15
HLA-DMB-260ENST00000477537 LAS1LQ9Y4W2 734 aaKnown RBP14.13□□□□□ -0.15
HLA-DMB-260ENST00000477537 DLG5Q8TDM6 1919 aa14.12□□□□□ -0.15
HLA-DMB-260ENST00000477537 PMFBP1Q8TBY8 1022 aa14.12□□□□□ -0.15
HLA-DMB-260ENST00000477537 PCDHB15Q9Y5E8 787 aa14.12□□□□□ -0.15
HLA-DMB-260ENST00000477537 RGPD8O14715 1765 aaPredicted RBP14.12□□□□□ -0.15
HLA-DMB-260ENST00000477537 XRN1Q8IZH2 1706 aaKnown RBP14.12□□□□□ -0.15
HLA-DMB-260ENST00000477537 CALD1Q05682 793 aaKnown RBP14.11□□□□□ -0.15
HLA-DMB-260ENST00000477537 FAM161AQ3B820 660 aa14.11□□□□□ -0.15
HLA-DMB-260ENST00000477537 RBM33Q96EV2 1170 aaKnown RBP14.11□□□□□ -0.15
HLA-DMB-260ENST00000477537 THUMPD2Q9BTF0 503 aaKnown RBP14.11□□□□□ -0.15
HLA-DMB-260ENST00000477537 ZBTB47Q9UFB7 747 aaPredicted RBP14.11□□□□□ -0.15
HLA-DMB-260ENST00000477537 NALCNQ8IZF0 1738 aa14.11□□□□□ -0.15
HLA-DMB-260ENST00000477537 CHD2O14647 1828 aaKnown RBP14.11□□□□□ -0.15
HLA-DMB-260ENST00000477537 NOB1Q9ULX3 412 aaKnown RBP14.11□□□□□ -0.15
HLA-DMB-260ENST00000477537 TRIM27P14373 513 aa14.1□□□□□ -0.15
HLA-DMB-260ENST00000477537 SSH2Q76I76 1423 aa14.1□□□□□ -0.15
HLA-DMB-260ENST00000477537 KCNA6P17658 529 aa14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 EIF4A2Q14240 407 aaKnown RBP14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 ATF7IPQ6VMQ6 1270 aa14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 STRCP1A6NGW2 1772 aa14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 PEAK1Q9H792 1746 aa14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 GNAI1P63096 354 aa14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 LMOD3Q0VAK6 560 aa14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 ALDH1L2Q3SY69 923 aa14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 C8orf34Q49A92 452 aa14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 NGDNQ8NEJ9 315 aaKnown RBP14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 TTC21AQ8NDW8 1320 aa14.09□□□□□ -0.15
HLA-DMB-260ENST00000477537 USP31Q70CQ4 1352 aa14.08□□□□□ -0.16
HLA-DMB-260ENST00000477537 IFT57Q9NWB7 429 aa14.08□□□□□ -0.16
HLA-DMB-260ENST00000477537 KIF16BQ96L93 1317 aa14.08□□□□□ -0.16
HLA-DMB-260ENST00000477537 SOX12O15370 315 aa14.07□□□□□ -0.16
HLA-DMB-260ENST00000477537 AEBP1Q8IUX7 1158 aa14.07□□□□□ -0.16
HLA-DMB-260ENST00000477537 ITPRIPQ8IWB1 547 aa14.07□□□□□ -0.16
HLA-DMB-260ENST00000477537 RWDD1Q9H446 243 aaPredicted RBP14.07□□□□□ -0.16
HLA-DMB-260ENST00000477537 IPO8O15397 1037 aaKnown RBP14.07□□□□□ -0.16
HLA-DMB-260ENST00000477537 SULT6B1Q6IMI4 303 aa14.07□□□□□ -0.16
HLA-DMB-260ENST00000477537 ZNF853P0CG23 659 aa14.06□□□□□ -0.16
HLA-DMB-260ENST00000477537 MBIPQ9NS73 344 aa14.06□□□□□ -0.16
HLA-DMB-260ENST00000477537 DDX19BQ9UMR2 479 aa14.06□□□□□ -0.16
HLA-DMB-260ENST00000477537 HSP90AB2PQ58FF8 381 aa14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 ZNF428Q96B54 188 aa14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 ZNF335Q9H4Z2 1342 aaPredicted RBP14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 PIK3R4Q99570 1358 aa14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 VIRMAQ69YN4 1812 aaKnown RBP14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 FAM83GA6ND36 823 aa14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 VAMP4O75379 141 aa14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 TMEM57Q8N5G2 664 aa14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 FMN2Q9NZ56 1722 aa14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 ANKARQ7Z5J8 1434 aa14.05□□□□□ -0.16
HLA-DMB-260ENST00000477537 TSPYL6Q8N831 410 aa14.04□□□□□ -0.16
HLA-DMB-260ENST00000477537 CFAP44Q96MT7 982 aa14.04□□□□□ -0.16
HLA-DMB-260ENST00000477537 PDZRN3Q9UPQ7 1066 aa14.04□□□□□ -0.16
HLA-DMB-260ENST00000477537 RGPD1P0DJD0 1748 aa14.04□□□□□ -0.16
HLA-DMB-260ENST00000477537 BRPF1P55201 1214 aaPredicted RBP14.03□□□□□ -0.16
HLA-DMB-260ENST00000477537 DCTN1Q14203 1278 aa14.03□□□□□ -0.16
HLA-DMB-260ENST00000477537 MAP3K19Q56UN5 1328 aa14.03□□□□□ -0.16
HLA-DMB-260ENST00000477537 PIK3C2AO00443 1686 aa14.03□□□□□ -0.16
HLA-DMB-260ENST00000477537 MRPL50Q8N5N7 158 aaKnown RBP14.03□□□□□ -0.16
HLA-DMB-260ENST00000477537 DDRGK1Q96HY6 314 aa14.03□□□□□ -0.16
HLA-DMB-260ENST00000477537 ELL2O00472 640 aaPredicted RBP14.02□□□□□ -0.16
HLA-DMB-260ENST00000477537 NWD1Q149M9 1564 aa14.02□□□□□ -0.16
HLA-DMB-260ENST00000477537 SBNO1A3KN83 1393 aa14.02□□□□□ -0.17
HLA-DMB-260ENST00000477537 ARHGEF10O15013 1369 aa14.01□□□□□ -0.17
HLA-DMB-260ENST00000477537 FLT4P35916 1363 aa14.01□□□□□ -0.17
HLA-DMB-260ENST00000477537 TWISTNBQ3B726 338 aaPredicted RBP14.01□□□□□ -0.17
HLA-DMB-260ENST00000477537 C8orf58Q8NAV2 365 aa14.01□□□□□ -0.17
HLA-DMB-260ENST00000477537 PIAS4Q8N2W9 510 aaPredicted RBP14□□□□□ -0.17
HLA-DMB-260ENST00000477537 ZBTB40Q9NUA8 1239 aa14□□□□□ -0.17
HLA-DMB-260ENST00000477537 AMPHP49418 695 aa14□□□□□ -0.17
HLA-DMB-260ENST00000477537 NLRP6P59044 892 aa14□□□□□ -0.17
HLA-DMB-260ENST00000477537 HDAC1Q13547 482 aaPredicted RBP14□□□□□ -0.17
HLA-DMB-260ENST00000477537 PROSER2Q86WR7 435 aaPredicted RBP13.99□□□□□ -0.17
HLA-DMB-260ENST00000477537 ARHGAP45Q92619 1136 aa13.99□□□□□ -0.17
HLA-DMB-260ENST00000477537 NUTM2GQ5VZR2 741 aa13.98□□□□□ -0.17
HLA-DMB-260ENST00000477537 MCM10Q7L590 875 aa13.98□□□□□ -0.17
HLA-DMB-260ENST00000477537 MARF1Q9Y4F3 1742 aaKnown RBP13.98□□□□□ -0.17
HLA-DMB-260ENST00000477537 XIRP1Q702N8 1843 aaKnown RBP13.97□□□□□ -0.17
HLA-DMB-260ENST00000477537 C14orf37Q86TY3 774 aa13.97□□□□□ -0.17
HLA-DMB-260ENST00000477537 NBR1Q14596 966 aa13.96□□□□□ -0.17
HLA-DMB-260ENST00000477537 USP54Q70EL1 1684 aa13.96□□□□□ -0.17
HLA-DMB-260ENST00000477537 TMEM94Q12767 1356 aa13.96□□□□□ -0.17
HLA-DMB-260ENST00000477537 CHL1O00533 1208 aa13.96□□□□□ -0.18
HLA-DMB-260ENST00000477537 ABTB2Q8N961 1025 aa13.96□□□□□ -0.18
HLA-DMB-260ENST00000477537 EYA1Q99502 592 aa13.96□□□□□ -0.18
HLA-DMB-260ENST00000477537 PHF8Q9UPP1 1060 aa13.96□□□□□ -0.18
HLA-DMB-260ENST00000477537 MTHFSDQ2M296 383 aaKnown RBP13.95□□□□□ -0.18
HLA-DMB-260ENST00000477537 ABCC4O15439 1325 aa13.95□□□□□ -0.18
HLA-DMB-260ENST00000477537 IGSF1Q8N6C5 1336 aa13.95□□□□□ -0.18
HLA-DMB-260ENST00000477537 FOXO3O43524 673 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms