RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RTN4Q9NQC3 1192 aaKnown RBP10.83□□□□□ -0.68
CCDC88A-213ENST00000476903 ARHGEF12Q9NZN5 1544 aa10.83□□□□□ -0.68
CCDC88A-213ENST00000476903 DIP2CQ9Y2E4 1556 aa10.82□□□□□ -0.68
CCDC88A-213ENST00000476903 MLH3Q9UHC1 1453 aa10.82□□□□□ -0.68
CCDC88A-213ENST00000476903 CCNB3Q8WWL7 1395 aa10.82□□□□□ -0.68
CCDC88A-213ENST00000476903 AMER1Q5JTC6 1135 aaPredicted RBP10.82□□□□□ -0.68
CCDC88A-213ENST00000476903 RDH13Q8NBN7 331 aa10.82□□□□□ -0.68
CCDC88A-213ENST00000476903 NLRP7Q8WX94 980 aa10.82□□□□□ -0.68
CCDC88A-213ENST00000476903 ABCA6Q8N139 1617 aa10.82□□□□□ -0.68
CCDC88A-213ENST00000476903 TRAPPC8Q9Y2L5 1435 aa10.82□□□□□ -0.68
CCDC88A-213ENST00000476903 REREQ9P2R6 1566 aa10.82□□□□□ -0.68
CCDC88A-213ENST00000476903 KIDINS220Q9ULH0 1771 aa10.81□□□□□ -0.68
CCDC88A-213ENST00000476903 SYCP2Q9BX26 1530 aa10.81□□□□□ -0.68
CCDC88A-213ENST00000476903 LOC105371045A0A1W2PR82 267 aa10.81□□□□□ -0.68
CCDC88A-213ENST00000476903 MSS51Q4VC12 460 aa10.81□□□□□ -0.68
CCDC88A-213ENST00000476903 PHOX2BQ99453 314 aa10.81□□□□□ -0.68
CCDC88A-213ENST00000476903 STK17AQ9UEE5 414 aa10.81□□□□□ -0.68
CCDC88A-213ENST00000476903 TIAM1Q13009 1591 aa10.81□□□□□ -0.68
CCDC88A-213ENST00000476903 SUPT6HQ7KZ85 1726 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-213ENST00000476903 PLEKHH2Q8IVE3 1493 aa10.81□□□□□ -0.68
CCDC88A-213ENST00000476903 DDX11L8A8MPP1 907 aa10.8□□□□□ -0.68
CCDC88A-213ENST00000476903 WNT7AO00755 349 aa10.8□□□□□ -0.68
CCDC88A-213ENST00000476903 RBM26Q5T8P6 1007 aaKnown RBP10.8□□□□□ -0.68
CCDC88A-213ENST00000476903 RNF19BQ6ZMZ0 732 aa10.8□□□□□ -0.68
CCDC88A-213ENST00000476903 CFDP1Q9UEE9 299 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-213ENST00000476903 ZNF777Q9ULD5 760 aaPredicted RBP10.8□□□□□ -0.68
CCDC88A-213ENST00000476903 VPS8Q8N3P4 1428 aa10.79□□□□□ -0.68
CCDC88A-213ENST00000476903 KIAA1107Q9UPP5 1409 aa10.79□□□□□ -0.68
CCDC88A-213ENST00000476903 SNRPBP14678 240 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-213ENST00000476903 MLECQ14165 292 aa10.79□□□□□ -0.68
CCDC88A-213ENST00000476903 ATP13A2Q9NQ11 1180 aa10.79□□□□□ -0.68
CCDC88A-213ENST00000476903 TTC24A2A3L6 582 aaPredicted RBP10.78□□□□□ -0.68
CCDC88A-213ENST00000476903 GNPATO15228 680 aa10.78□□□□□ -0.68
CCDC88A-213ENST00000476903 SNIP1Q8TAD8 396 aaKnown RBP10.78□□□□□ -0.68
CCDC88A-213ENST00000476903 AGLP35573 1532 aa10.77□□□□□ -0.69
CCDC88A-213ENST00000476903 TESPA1A2RU30 521 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-213ENST00000476903 J3QL48 77 aa10.76□□□□□ -0.69
CCDC88A-213ENST00000476903 HNRNPMP52272 730 aaKnown RBP eCLIP10.76□□□□□ -0.69
CCDC88A-213ENST00000476903 INO80Q9ULG1 1556 aaPredicted RBP10.76□□□□□ -0.69
CCDC88A-213ENST00000476903 NCOA2Q15596 1464 aa10.75□□□□□ -0.69
CCDC88A-213ENST00000476903 ATP7AQ04656 1500 aa10.75□□□□□ -0.69
CCDC88A-213ENST00000476903 MMP16P51512 607 aa10.75□□□□□ -0.69
CCDC88A-213ENST00000476903 TRIM32Q13049 653 aa10.75□□□□□ -0.69
CCDC88A-213ENST00000476903 TRIM47Q96LD4 638 aa10.75□□□□□ -0.69
CCDC88A-213ENST00000476903 SPAG9O60271 1321 aaKnown RBP10.75□□□□□ -0.69
CCDC88A-213ENST00000476903 LMTK3Q96Q04 1460 aa10.74□□□□□ -0.69
CCDC88A-213ENST00000476903 MAP3K1Q13233 1512 aa10.74□□□□□ -0.69
CCDC88A-213ENST00000476903 TERTO14746 1132 aaKnown RBP10.74□□□□□ -0.69
CCDC88A-213ENST00000476903 ZBTB24O43167 697 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-213ENST00000476903 INSM1Q01101 510 aaPredicted RBP10.74□□□□□ -0.69
CCDC88A-213ENST00000476903 MRGPRX2Q96LB1 330 aa10.74□□□□□ -0.69
CCDC88A-213ENST00000476903 ADGBQ8N7X0 1667 aa10.73□□□□□ -0.69
CCDC88A-213ENST00000476903 SETD1BQ9UPS6 1966 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-213ENST00000476903 LRRC9Q6ZRR7 1453 aa10.73□□□□□ -0.69
CCDC88A-213ENST00000476903 PREX1Q8TCU6 1659 aa10.73□□□□□ -0.69
CCDC88A-213ENST00000476903 SULF1Q8IWU6 871 aa10.72□□□□□ -0.69
CCDC88A-213ENST00000476903 C3P01024 1663 aa10.72□□□□□ -0.69
CCDC88A-213ENST00000476903 PLXNC1O60486 1568 aa10.71□□□□□ -0.69
CCDC88A-213ENST00000476903 CAMSAP2Q08AD1 1489 aa10.71□□□□□ -0.69
CCDC88A-213ENST00000476903 HPS1Q92902 700 aa10.71□□□□□ -0.69
CCDC88A-213ENST00000476903 ZNF644Q9H582 1327 aaPredicted RBP10.71□□□□□ -0.69
CCDC88A-213ENST00000476903 MBD5Q9P267 1494 aa10.71□□□□□ -0.69
CCDC88A-213ENST00000476903 A2MP01023 1474 aa10.7□□□□□ -0.7
CCDC88A-213ENST00000476903 CNTLNQ9NXG0 1405 aa10.7□□□□□ -0.7
CCDC88A-213ENST00000476903 ESF1Q9H501 851 aaKnown RBP10.7□□□□□ -0.7
CCDC88A-213ENST00000476903 MROH2AA6NES4 1674 aa10.69□□□□□ -0.7
CCDC88A-213ENST00000476903 CCDC141Q6ZP82 1450 aa10.69□□□□□ -0.7
CCDC88A-213ENST00000476903 RTEL1-TNFRSF6BF6WH68 1400 aa10.69□□□□□ -0.7
CCDC88A-213ENST00000476903 DXOO77932 396 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-213ENST00000476903 CEBPAP49715 358 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-213ENST00000476903 SKOR1P84550 965 aa10.68□□□□□ -0.7
CCDC88A-213ENST00000476903 SENP2Q9HC62 589 aa10.68□□□□□ -0.7
CCDC88A-213ENST00000476903 ARHGEF5Q12774 1597 aa10.68□□□□□ -0.7
CCDC88A-213ENST00000476903 CLTCQ00610 1675 aaKnown RBP10.66□□□□□ -0.7
CCDC88A-213ENST00000476903 LORP23490 312 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-213ENST00000476903 HSPA2P54652 639 aa10.66□□□□□ -0.7
CCDC88A-213ENST00000476903 KANK4Q5T7N3 995 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-213ENST00000476903 UHRF1BP1Q6BDS2 1440 aa10.66□□□□□ -0.7
CCDC88A-213ENST00000476903 CD46P15529 392 aa10.65□□□□□ -0.7
CCDC88A-213ENST00000476903 MYOM3Q5VTT5 1437 aa10.65□□□□□ -0.7
CCDC88A-213ENST00000476903 MIA2Q96PC5 1412 aa10.65□□□□□ -0.7
CCDC88A-213ENST00000476903 Q3C1V9 767 aa10.64□□□□□ -0.71
CCDC88A-213ENST00000476903 GRIPAP1Q4V328 841 aa10.64□□□□□ -0.71
CCDC88A-213ENST00000476903 USB1Q9BQ65 265 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-213ENST00000476903 DHX29Q7Z478 1369 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-213ENST00000476903 TSPY4P0CV99 314 aa10.63□□□□□ -0.71
CCDC88A-213ENST00000476903 TSPY10P0CW01 314 aa10.63□□□□□ -0.71
CCDC88A-213ENST00000476903 RC3H1Q5TC82 1133 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-213ENST00000476903 NPATQ14207 1427 aa10.63□□□□□ -0.71
CCDC88A-213ENST00000476903 MAST1Q9Y2H9 1570 aa10.63□□□□□ -0.71
CCDC88A-213ENST00000476903 GGT6Q6P531 493 aa10.62□□□□□ -0.71
CCDC88A-213ENST00000476903 KIFC2Q96AC6 838 aa10.62□□□□□ -0.71
CCDC88A-213ENST00000476903 REPIN1Q9BWE0 567 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-213ENST00000476903 ZMYM3Q14202 1370 aa10.62□□□□□ -0.71
CCDC88A-213ENST00000476903 STRCQ7RTU9 1775 aa10.62□□□□□ -0.71
CCDC88A-213ENST00000476903 SMYD5Q6GMV2 418 aa10.61□□□□□ -0.71
CCDC88A-213ENST00000476903 FAM135AQ9P2D6 1515 aa10.61□□□□□ -0.71
CCDC88A-213ENST00000476903 PTPN23Q9H3S7 1636 aa10.61□□□□□ -0.71
CCDC88A-213ENST00000476903 CROCC2H7BZ55 1655 aa10.6□□□□□ -0.71
CCDC88A-213ENST00000476903 HLA-CQ95604 372 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms