RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 DZIP1LQ8IYY4 767 aaKnown RBP10.55□□□□□ -0.72
VAPB-205ENST00000476395 KIF2CQ99661 725 aa10.55□□□□□ -0.72
VAPB-205ENST00000476395 MRE11P49959 708 aa10.54□□□□□ -0.72
VAPB-205ENST00000476395 ZKSCAN2Q63HK3 967 aa10.54□□□□□ -0.72
VAPB-205ENST00000476395 TMEM57Q8N5G2 664 aa10.54□□□□□ -0.72
VAPB-205ENST00000476395 NOB1Q9ULX3 412 aaKnown RBP10.54□□□□□ -0.72
VAPB-205ENST00000476395 MON2Q7Z3U7 1717 aa10.54□□□□□ -0.72
VAPB-205ENST00000476395 CANXP27824 592 aaKnown RBP10.54□□□□□ -0.72
VAPB-205ENST00000476395 SAFB2Q14151 953 aaKnown RBP eCLIP10.54□□□□□ -0.72
VAPB-205ENST00000476395 CFAP44Q96MT7 982 aa10.54□□□□□ -0.72
VAPB-205ENST00000476395 NAP1L2Q9ULW6 460 aaPredicted RBP10.54□□□□□ -0.72
VAPB-205ENST00000476395 PIK3R4Q99570 1358 aa10.53□□□□□ -0.72
VAPB-205ENST00000476395 ZBTB7CA1YPR0 619 aa10.53□□□□□ -0.72
VAPB-205ENST00000476395 TMEM132AQ24JP5 1023 aa10.53□□□□□ -0.72
VAPB-205ENST00000476395 TRIM44Q96DX7 344 aaPredicted RBP10.53□□□□□ -0.72
VAPB-205ENST00000476395 IL16Q14005 1332 aa10.53□□□□□ -0.72
VAPB-205ENST00000476395 CT47B1P0C2W7 299 aaPredicted RBP10.53□□□□□ -0.72
VAPB-205ENST00000476395 ATF7IPQ6VMQ6 1270 aa10.53□□□□□ -0.72
VAPB-205ENST00000476395 TSPOAP1O95153 1857 aa10.53□□□□□ -0.72
VAPB-205ENST00000476395 C3P01024 1663 aa10.53□□□□□ -0.72
VAPB-205ENST00000476395 RWDD1Q9H446 243 aaPredicted RBP10.52□□□□□ -0.72
VAPB-205ENST00000476395 AKAP12Q02952 1782 aa10.52□□□□□ -0.72
VAPB-205ENST00000476395 BCCIPQ9P287 314 aaKnown RBP eCLIP10.52□□□□□ -0.73
VAPB-205ENST00000476395 CALD1Q05682 793 aaKnown RBP10.52□□□□□ -0.73
VAPB-205ENST00000476395 SIRT2Q8IXJ6 389 aa10.52□□□□□ -0.73
VAPB-205ENST00000476395 FOXD4L1Q9NU39 408 aa10.52□□□□□ -0.73
VAPB-205ENST00000476395 TUBGCP6Q96RT7 1819 aa10.51□□□□□ -0.73
VAPB-205ENST00000476395 PTCH1Q13635 1447 aa10.51□□□□□ -0.73
VAPB-205ENST00000476395 VGFO15240 615 aaPredicted RBP10.51□□□□□ -0.73
VAPB-205ENST00000476395 DLC1Q96QB1 1528 aa10.51□□□□□ -0.73
VAPB-205ENST00000476395 PHACTR3Q96KR7 559 aa10.51□□□□□ -0.73
VAPB-205ENST00000476395 MFAP1P55081 439 aaKnown RBP10.51□□□□□ -0.73
VAPB-205ENST00000476395 BRPF1P55201 1214 aaPredicted RBP10.51□□□□□ -0.73
VAPB-205ENST00000476395 NUCB1Q02818 461 aa10.51□□□□□ -0.73
VAPB-205ENST00000476395 JARID2Q92833 1246 aaPredicted RBP10.51□□□□□ -0.73
VAPB-205ENST00000476395 NRKQ7Z2Y5 1582 aa10.51□□□□□ -0.73
VAPB-205ENST00000476395 CD2BP2O95400 341 aaKnown RBP10.5□□□□□ -0.73
VAPB-205ENST00000476395 CFAP53Q96M91 514 aa10.5□□□□□ -0.73
VAPB-205ENST00000476395 PRAM1Q96QH2 718 aa10.5□□□□□ -0.73
VAPB-205ENST00000476395 SMC4Q9NTJ3 1288 aa10.5□□□□□ -0.73
VAPB-205ENST00000476395 CPS1P31327 1500 aa10.5□□□□□ -0.73
VAPB-205ENST00000476395 TRHP20396 242 aaPredicted RBP10.5□□□□□ -0.73
VAPB-205ENST00000476395 R3HCC1Q9Y3T6 440 aaKnown RBP10.5□□□□□ -0.73
VAPB-205ENST00000476395 CPSF1Q10570 1443 aaKnown RBP10.5□□□□□ -0.73
VAPB-205ENST00000476395 RGPD1P0DJD0 1748 aa10.49□□□□□ -0.73
VAPB-205ENST00000476395 TPM2P07951 284 aa10.49□□□□□ -0.73
VAPB-205ENST00000476395 RBM25P49756 843 aaKnown RBP10.49□□□□□ -0.73
VAPB-205ENST00000476395 TSPYL6Q8N831 410 aa10.49□□□□□ -0.73
VAPB-205ENST00000476395 C22orf23Q9BZE7 217 aa10.49□□□□□ -0.73
VAPB-205ENST00000476395 POLKQ9UBT6 870 aa10.49□□□□□ -0.73
VAPB-205ENST00000476395 MINK1Q8N4C8 1332 aaPredicted RBP10.49□□□□□ -0.73
VAPB-205ENST00000476395 STK26Q9P289 416 aa10.49□□□□□ -0.73
VAPB-205ENST00000476395 ATAD2Q6PL18 1390 aa10.49□□□□□ -0.73
VAPB-205ENST00000476395 RGS12O14924 1447 aa10.49□□□□□ -0.73
VAPB-205ENST00000476395 ZBTB7BO15156 539 aaPredicted RBP10.49□□□□□ -0.73
VAPB-205ENST00000476395 PEAK1Q9H792 1746 aa10.48□□□□□ -0.73
VAPB-205ENST00000476395 ZNF853P0CG23 659 aa10.48□□□□□ -0.73
VAPB-205ENST00000476395 FBXO31Q5XUX0 539 aaPredicted RBP10.48□□□□□ -0.73
VAPB-205ENST00000476395 ATP7BP35670 1465 aa10.48□□□□□ -0.73
VAPB-205ENST00000476395 SPATA31D1Q6ZQQ2 1576 aa10.48□□□□□ -0.73
VAPB-205ENST00000476395 A2ML1A8K2U0 1454 aa10.48□□□□□ -0.73
VAPB-205ENST00000476395 KIF13AQ9H1H9 1805 aa10.47□□□□□ -0.73
VAPB-205ENST00000476395 U2SURPO15042 1029 aaKnown RBP10.47□□□□□ -0.73
VAPB-205ENST00000476395 ITPRIPQ8IWB1 547 aa10.47□□□□□ -0.73
VAPB-205ENST00000476395 DDX19BQ9UMR2 479 aa10.47□□□□□ -0.73
VAPB-205ENST00000476395 VAMP4O75379 141 aa10.47□□□□□ -0.73
VAPB-205ENST00000476395 THUMPD2Q9BTF0 503 aaKnown RBP10.47□□□□□ -0.73
VAPB-205ENST00000476395 XPCQ01831 940 aaPredicted RBP10.47□□□□□ -0.73
VAPB-205ENST00000476395 CABP1Q9NZU7 370 aa10.47□□□□□ -0.73
VAPB-205ENST00000476395 CHMP5Q9NZZ3 219 aa10.47□□□□□ -0.73
VAPB-205ENST00000476395 NALCNQ8IZF0 1738 aa10.47□□□□□ -0.73
VAPB-205ENST00000476395 AK9Q5TCS8 1911 aa10.46□□□□□ -0.73
VAPB-205ENST00000476395 MRPL50Q8N5N7 158 aaKnown RBP10.46□□□□□ -0.73
VAPB-205ENST00000476395 CDK19Q9BWU1 502 aa10.46□□□□□ -0.73
VAPB-205ENST00000476395 REREQ9P2R6 1566 aa10.46□□□□□ -0.73
VAPB-205ENST00000476395 ALDH1L2Q3SY69 923 aa10.46□□□□□ -0.73
VAPB-205ENST00000476395 FTSJ3Q8IY81 847 aaKnown RBP10.46□□□□□ -0.73
VAPB-205ENST00000476395 TNPO1Q92973 898 aaKnown RBP10.46□□□□□ -0.73
VAPB-205ENST00000476395 UPF2Q9HAU5 1272 aaKnown RBP10.46□□□□□ -0.73
VAPB-205ENST00000476395 TOPAZ1Q8N9V7 1692 aa10.46□□□□□ -0.73
VAPB-205ENST00000476395 CDK12Q9NYV4 1490 aaPredicted RBP10.46□□□□□ -0.74
VAPB-205ENST00000476395 ABCC4O15439 1325 aa10.46□□□□□ -0.74
VAPB-205ENST00000476395 SRPK2P78362 688 aaKnown RBP10.46□□□□□ -0.74
VAPB-205ENST00000476395 CHMP4BQ9H444 224 aaKnown RBP10.46□□□□□ -0.74
VAPB-205ENST00000476395 SLC52A1Q9NWF4 448 aa10.45□□□□□ -0.74
VAPB-205ENST00000476395 ZRANB1Q9UGI0 708 aa10.45□□□□□ -0.74
VAPB-205ENST00000476395 DIAPH1O60610 1272 aaKnown RBP10.45□□□□□ -0.74
VAPB-205ENST00000476395 IL13P35225 146 aa10.45□□□□□ -0.74
VAPB-205ENST00000476395 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.45□□□□□ -0.74
VAPB-205ENST00000476395 TSC1Q92574 1164 aa10.45□□□□□ -0.74
VAPB-205ENST00000476395 CCDC9Q9Y3X0 531 aaKnown RBP10.45□□□□□ -0.74
VAPB-205ENST00000476395 RIMS1Q86UR5 1692 aaKnown RBP10.44□□□□□ -0.74
VAPB-205ENST00000476395 FCHSD2O94868 740 aa10.44□□□□□ -0.74
VAPB-205ENST00000476395 PRKAR2BP31323 418 aa10.44□□□□□ -0.74
VAPB-205ENST00000476395 WAPLQ7Z5K2 1190 aa10.44□□□□□ -0.74
VAPB-205ENST00000476395 CHD1LQ86WJ1 897 aa10.44□□□□□ -0.74
VAPB-205ENST00000476395 SNX21Q969T3 373 aa10.44□□□□□ -0.74
VAPB-205ENST00000476395 ATP10DQ9P241 1426 aa10.44□□□□□ -0.74
VAPB-205ENST00000476395 ITSN1Q15811 1721 aa10.44□□□□□ -0.74
VAPB-205ENST00000476395 LNPKQ9C0E8 428 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms