RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 L1TD1Q5T7N2 865 aaKnown RBP6.18□□□□□ -1.42
CCDC39-204ENST00000476379 E9PCH4 1651 aa6.18□□□□□ -1.42
CCDC39-204ENST00000476379 PRPF40AO75400 957 aaKnown RBP6.18□□□□□ -1.42
CCDC39-204ENST00000476379 TRIM27P14373 513 aa6.18□□□□□ -1.42
CCDC39-204ENST00000476379 AMPHP49418 695 aa6.18□□□□□ -1.42
CCDC39-204ENST00000476379 HSP90AA2PQ14568 343 aaPredicted RBP6.18□□□□□ -1.42
CCDC39-204ENST00000476379 HSP90AB2PQ58FF8 381 aa6.18□□□□□ -1.42
CCDC39-204ENST00000476379 STK11IPQ8N1F8 1099 aa6.18□□□□□ -1.42
CCDC39-204ENST00000476379 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.18□□□□□ -1.42
CCDC39-204ENST00000476379 RTF1Q92541 710 aaKnown RBP6.18□□□□□ -1.42
CCDC39-204ENST00000476379 UPF3BQ9BZI7 483 aaKnown RBP6.18□□□□□ -1.42
CCDC39-204ENST00000476379 IL1RAPL2Q9NP60 686 aa6.18□□□□□ -1.42
CCDC39-204ENST00000476379 INO80Q9ULG1 1556 aaPredicted RBP6.18□□□□□ -1.42
CCDC39-204ENST00000476379 IPO8O15397 1037 aaKnown RBP6.17□□□□□ -1.42
CCDC39-204ENST00000476379 FGD1P98174 961 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 AEBP1Q8IUX7 1158 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 EXOC6BQ9Y2D4 811 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 LMTK3Q96Q04 1460 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 SPATA31E1Q6ZUB1 1445 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 NSD3Q9BZ95 1437 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 KCNQ4P56696 695 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 CALD1Q05682 793 aaKnown RBP6.17□□□□□ -1.42
CCDC39-204ENST00000476379 SSFA2P28290 1259 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 GLIPR1L2Q4G1C9 344 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 C8orf37Q96NL8 207 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 R3HCC1Q9Y3T6 440 aaKnown RBP6.17□□□□□ -1.42
CCDC39-204ENST00000476379 A2ML1A8K2U0 1454 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 ANXA1P04083 346 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 MAPK8IP2Q13387 824 aaPredicted RBP6.17□□□□□ -1.42
CCDC39-204ENST00000476379 TSPYL6Q8N831 410 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 GBP4Q96PP9 640 aa6.17□□□□□ -1.42
CCDC39-204ENST00000476379 RBM27Q9P2N5 1060 aaKnown RBP6.17□□□□□ -1.42
CCDC39-204ENST00000476379 KDM5CP41229 1560 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 FAM177BA6PVY3 158 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 PIP4K2AP48426 406 aaPredicted RBP6.16□□□□□ -1.42
CCDC39-204ENST00000476379 AIMP1Q12904 312 aaKnown RBP6.16□□□□□ -1.42
CCDC39-204ENST00000476379 FKBP5Q13451 457 aaPredicted RBP6.16□□□□□ -1.42
CCDC39-204ENST00000476379 NLRP2Q9NX02 1062 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 PHF8Q9UPP1 1060 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 ADGBQ8N7X0 1667 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 CASC1Q6TDU7 716 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 TERF2IPQ9NYB0 399 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 SULT6B1Q6IMI4 303 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 DRC7Q8IY82 874 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 CHMP5Q9NZZ3 219 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 CCDC61Q9Y6R9 512 aa6.16□□□□□ -1.42
CCDC39-204ENST00000476379 MCM4P33991 863 aa6.15□□□□□ -1.42
CCDC39-204ENST00000476379 MVPQ14764 893 aaKnown RBP6.15□□□□□ -1.42
CCDC39-204ENST00000476379 OTUD7AQ8TE49 926 aaPredicted RBP6.15□□□□□ -1.42
CCDC39-204ENST00000476379 CHMP4CQ96CF2 233 aa6.15□□□□□ -1.42
CCDC39-204ENST00000476379 RRAGDQ9NQL2 400 aaPredicted RBP6.15□□□□□ -1.42
CCDC39-204ENST00000476379 DDX19BQ9UMR2 479 aa6.15□□□□□ -1.42
CCDC39-204ENST00000476379 YTHDC2Q9H6S0 1430 aaKnown RBP6.15□□□□□ -1.42
CCDC39-204ENST00000476379 KDM5DQ9BY66 1539 aa6.15□□□□□ -1.42
CCDC39-204ENST00000476379 MROH1Q8NDA8 1641 aa6.15□□□□□ -1.42
CCDC39-204ENST00000476379 KRT28Q7Z3Y7 464 aa6.15□□□□□ -1.42
CCDC39-204ENST00000476379 PRDM10Q9NQV6 1147 aa6.15□□□□□ -1.42
CCDC39-204ENST00000476379 PTPRUQ92729 1446 aa6.15□□□□□ -1.43
CCDC39-204ENST00000476379 NEK4P51957 841 aa6.15□□□□□ -1.43
CCDC39-204ENST00000476379 ATF7IPQ6VMQ6 1270 aa6.15□□□□□ -1.43
CCDC39-204ENST00000476379 SMIM5Q71RC9 77 aa6.15□□□□□ -1.43
CCDC39-204ENST00000476379 CROCC2H7BZ55 1655 aa6.15□□□□□ -1.43
CCDC39-204ENST00000476379 GCC2Q8IWJ2 1684 aa6.15□□□□□ -1.43
CCDC39-204ENST00000476379 EFCAB6Q5THR3 1501 aa6.15□□□□□ -1.43
CCDC39-204ENST00000476379 ARHGEF40Q8TER5 1519 aa6.15□□□□□ -1.43
CCDC39-204ENST00000476379 TMPOP42166 694 aaKnown RBP6.15□□□□□ -1.43
CCDC39-204ENST00000476379 JARID2Q92833 1246 aaPredicted RBP6.15□□□□□ -1.43
CCDC39-204ENST00000476379 SLAIN2Q9P270 581 aa6.15□□□□□ -1.43
CCDC39-204ENST00000476379 EIF3AQ14152 1382 aaKnown RBP6.15□□□□□ -1.43
CCDC39-204ENST00000476379 SYNMO15061 1565 aa6.14□□□□□ -1.43
CCDC39-204ENST00000476379 FYB1O15117 783 aa6.14□□□□□ -1.43
CCDC39-204ENST00000476379 XRCC6P12956 609 aaKnown RBP eCLIP6.14□□□□□ -1.43
CCDC39-204ENST00000476379 CEBPZQ03701 1054 aaKnown RBP6.14□□□□□ -1.43
CCDC39-204ENST00000476379 TWISTNBQ3B726 338 aaPredicted RBP6.14□□□□□ -1.43
CCDC39-204ENST00000476379 MEX3CQ5U5Q3 659 aaKnown RBP6.14□□□□□ -1.43
CCDC39-204ENST00000476379 COG3Q96JB2 828 aa6.14□□□□□ -1.43
CCDC39-204ENST00000476379 GPRASP1Q5JY77 1395 aa6.14□□□□□ -1.43
CCDC39-204ENST00000476379 GLI2P10070 1586 aa6.14□□□□□ -1.43
CCDC39-204ENST00000476379 NPHP1O15259 732 aa6.14□□□□□ -1.43
CCDC39-204ENST00000476379 SLC4A2P04920 1241 aa6.14□□□□□ -1.43
CCDC39-204ENST00000476379 PHF23Q9BUL5 403 aaPredicted RBP6.14□□□□□ -1.43
CCDC39-204ENST00000476379 PRDM11Q9NQV5 511 aa6.14□□□□□ -1.43
CCDC39-204ENST00000476379 PHACTR3Q96KR7 559 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 VPS37CA5D8V6 355 aaPredicted RBP6.13□□□□□ -1.43
CCDC39-204ENST00000476379 SPC24Q8NBT2 197 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 ZNF830Q96NB3 372 aaPredicted RBP6.13□□□□□ -1.43
CCDC39-204ENST00000476379 RNF17Q9BXT8 1623 aaKnown RBP6.13□□□□□ -1.43
CCDC39-204ENST00000476379 FIBPO43427 364 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 EVA1CP58658 441 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 TNPO1Q92973 898 aaKnown RBP6.13□□□□□ -1.43
CCDC39-204ENST00000476379 SIL1Q9H173 461 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 PIK3C2BO00750 1634 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 A0A1W2PP64 1363 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 NASPP49321 788 aaPredicted RBP6.13□□□□□ -1.43
CCDC39-204ENST00000476379 NUTM1Q86Y26 1132 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 TCEANC2Q96MN5 208 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 GRPEL1Q9HAV7 217 aa6.13□□□□□ -1.43
CCDC39-204ENST00000476379 MYO5BQ9ULV0 1848 aa6.12□□□□□ -1.43
CCDC39-204ENST00000476379 STK3Q13188 491 aa6.12□□□□□ -1.43
CCDC39-204ENST00000476379 FERMT3Q86UX7 667 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms