RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 ZNF853P0CG23 659 aa12.66□□□□□ -0.38
USP39-214ENST00000474572 BRPF1P55201 1214 aaPredicted RBP12.66□□□□□ -0.38
USP39-214ENST00000474572 CALD1Q05682 793 aaKnown RBP12.66□□□□□ -0.38
USP39-214ENST00000474572 ZNF428Q96B54 188 aa12.66□□□□□ -0.38
USP39-214ENST00000474572 DNAJC5Q9H3Z4 198 aa12.66□□□□□ -0.38
USP39-214ENST00000474572 FLT4P35916 1363 aa12.66□□□□□ -0.38
USP39-214ENST00000474572 NUTM2FA1L443 756 aa12.65□□□□□ -0.38
USP39-214ENST00000474572 HMOX1P09601 288 aa12.65□□□□□ -0.38
USP39-214ENST00000474572 LMOD3Q0VAK6 560 aa12.65□□□□□ -0.38
USP39-214ENST00000474572 ALDH1L2Q3SY69 923 aa12.65□□□□□ -0.38
USP39-214ENST00000474572 CLUAP1Q96AJ1 413 aa12.65□□□□□ -0.38
USP39-214ENST00000474572 LRRC37A3O60309 1634 aa12.65□□□□□ -0.38
USP39-214ENST00000474572 KDRP35968 1356 aa12.65□□□□□ -0.38
USP39-214ENST00000474572 ZKSCAN2Q63HK3 967 aa12.64□□□□□ -0.39
USP39-214ENST00000474572 PMFBP1Q8TBY8 1022 aa12.64□□□□□ -0.39
USP39-214ENST00000474572 PANK1Q8TE04 598 aa12.64□□□□□ -0.39
USP39-214ENST00000474572 IFT57Q9NWB7 429 aa12.64□□□□□ -0.39
USP39-214ENST00000474572 LTN1O94822 1766 aa12.64□□□□□ -0.39
USP39-214ENST00000474572 MAP3K19Q56UN5 1328 aa12.63□□□□□ -0.39
USP39-214ENST00000474572 RLBP1P12271 317 aa12.63□□□□□ -0.39
USP39-214ENST00000474572 CANXP27824 592 aaKnown RBP12.63□□□□□ -0.39
USP39-214ENST00000474572 NGDNQ8NEJ9 315 aaKnown RBP12.63□□□□□ -0.39
USP39-214ENST00000474572 BACH2Q9BYV9 841 aa12.63□□□□□ -0.39
USP39-214ENST00000474572 COG6Q9Y2V7 657 aa12.63□□□□□ -0.39
USP39-214ENST00000474572 KIF1AQ12756 1690 aa12.63□□□□□ -0.39
USP39-214ENST00000474572 NFAT5O94916 1531 aa12.62□□□□□ -0.39
USP39-214ENST00000474572 RTL1A6NKG5 1358 aa12.62□□□□□ -0.39
USP39-214ENST00000474572 GNAI1P63096 354 aa12.62□□□□□ -0.39
USP39-214ENST00000474572 MVPQ14764 893 aaKnown RBP12.62□□□□□ -0.39
USP39-214ENST00000474572 SSH1Q8WYL5 1049 aa12.62□□□□□ -0.39
USP39-214ENST00000474572 FRAT1Q92837 279 aaPredicted RBP12.62□□□□□ -0.39
USP39-214ENST00000474572 TNNQ9UQP3 1299 aa12.62□□□□□ -0.39
USP39-214ENST00000474572 TRPM3Q9HCF6 1732 aaPredicted RBP12.62□□□□□ -0.39
USP39-214ENST00000474572 IGSF1Q8N6C5 1336 aa12.62□□□□□ -0.39
USP39-214ENST00000474572 KIF16BQ96L93 1317 aa12.62□□□□□ -0.39
USP39-214ENST00000474572 MSH5O43196 834 aa12.61□□□□□ -0.39
USP39-214ENST00000474572 PDE4AP27815 886 aa12.61□□□□□ -0.39
USP39-214ENST00000474572 IGHDP01880 384 aa12.6□□□□□ -0.39
USP39-214ENST00000474572 HSP90AB2PQ58FF8 381 aa12.6□□□□□ -0.39
USP39-214ENST00000474572 DZIP1LQ8IYY4 767 aaKnown RBP12.6□□□□□ -0.39
USP39-214ENST00000474572 CFAP44Q96MT7 982 aa12.6□□□□□ -0.39
USP39-214ENST00000474572 BCL2L13Q9BXK5 485 aa12.6□□□□□ -0.39
USP39-214ENST00000474572 SMC4Q9NTJ3 1288 aa12.6□□□□□ -0.39
USP39-214ENST00000474572 SLIT3O75094 1523 aa12.6□□□□□ -0.39
USP39-214ENST00000474572 TRIM27P14373 513 aa12.59□□□□□ -0.39
USP39-214ENST00000474572 SULT6B1Q6IMI4 303 aa12.59□□□□□ -0.39
USP39-214ENST00000474572 ATF7IPQ6VMQ6 1270 aa12.59□□□□□ -0.39
USP39-214ENST00000474572 AEBP1Q8IUX7 1158 aa12.59□□□□□ -0.39
USP39-214ENST00000474572 PHF8Q9UPP1 1060 aa12.59□□□□□ -0.39
USP39-214ENST00000474572 CAMTA1Q9Y6Y1 1673 aa12.58□□□□□ -0.4
USP39-214ENST00000474572 VAMP4O75379 141 aa12.58□□□□□ -0.4
USP39-214ENST00000474572 CRB1P82279 1406 aa12.58□□□□□ -0.4
USP39-214ENST00000474572 MST1RQ04912 1400 aa12.58□□□□□ -0.4
USP39-214ENST00000474572 STRCP1A6NGW2 1772 aa12.57□□□□□ -0.4
USP39-214ENST00000474572 ARHGAP45Q92619 1136 aa12.57□□□□□ -0.4
USP39-214ENST00000474572 THUMPD2Q9BTF0 503 aaKnown RBP12.57□□□□□ -0.4
USP39-214ENST00000474572 MBIPQ9NS73 344 aa12.57□□□□□ -0.4
USP39-214ENST00000474572 PCDHB15Q9Y5E8 787 aa12.57□□□□□ -0.4
USP39-214ENST00000474572 KIAA0232Q92628 1395 aa12.56□□□□□ -0.4
USP39-214ENST00000474572 IPO8O15397 1037 aaKnown RBP12.56□□□□□ -0.4
USP39-214ENST00000474572 HOXC9P31274 260 aa12.56□□□□□ -0.4
USP39-214ENST00000474572 SKAP1Q86WV1 359 aa12.56□□□□□ -0.4
USP39-214ENST00000474572 MRPL50Q8N5N7 158 aaKnown RBP12.56□□□□□ -0.4
USP39-214ENST00000474572 NOB1Q9ULX3 412 aaKnown RBP12.56□□□□□ -0.4
USP39-214ENST00000474572 DDX19BQ9UMR2 479 aa12.56□□□□□ -0.4
USP39-214ENST00000474572 ALS2Q96Q42 1657 aa12.56□□□□□ -0.4
USP39-214ENST00000474572 NCOA3Q9Y6Q9 1424 aa12.55□□□□□ -0.4
USP39-214ENST00000474572 NLRP6P59044 892 aa12.55□□□□□ -0.4
USP39-214ENST00000474572 FTSJ3Q8IY81 847 aaKnown RBP12.55□□□□□ -0.4
USP39-214ENST00000474572 DCCP43146 1447 aa12.54□□□□□ -0.4
USP39-214ENST00000474572 NCAPD2Q15021 1401 aa12.54□□□□□ -0.4
USP39-214ENST00000474572 FAM83GA6ND36 823 aa12.54□□□□□ -0.4
USP39-214ENST00000474572 TSPYL6Q8N831 410 aa12.54□□□□□ -0.4
USP39-214ENST00000474572 EYA1Q99502 592 aa12.54□□□□□ -0.4
USP39-214ENST00000474572 MED1Q15648 1581 aaPredicted RBP12.53□□□□□ -0.4
USP39-214ENST00000474572 CHL1O00533 1208 aa12.53□□□□□ -0.4
USP39-214ENST00000474572 ANP32AP39687 249 aaKnown RBP12.53□□□□□ -0.4
USP39-214ENST00000474572 AMPHP49418 695 aa12.53□□□□□ -0.4
USP39-214ENST00000474572 HDAC1Q13547 482 aaPredicted RBP12.53□□□□□ -0.4
USP39-214ENST00000474572 TWISTNBQ3B726 338 aaPredicted RBP12.53□□□□□ -0.4
USP39-214ENST00000474572 FAM161AQ3B820 660 aa12.53□□□□□ -0.4
USP39-214ENST00000474572 C8orf34Q49A92 452 aa12.53□□□□□ -0.4
USP39-214ENST00000474572 TMEM57Q8N5G2 664 aa12.53□□□□□ -0.4
USP39-214ENST00000474572 ANP32EQ9BTT0 268 aa12.53□□□□□ -0.4
USP39-214ENST00000474572 FAM208AQ9UK61 1670 aaKnown RBP12.53□□□□□ -0.4
USP39-214ENST00000474572 ABCC4O15439 1325 aa12.53□□□□□ -0.4
USP39-214ENST00000474572 C1orf167Q5SNV9 1468 aa12.53□□□□□ -0.4
USP39-214ENST00000474572 LMO7Q8WWI1 1683 aa12.52□□□□□ -0.4
USP39-214ENST00000474572 N4BP2Q86UW6 1770 aaPredicted RBP12.52□□□□□ -0.41
USP39-214ENST00000474572 HTATSF1O43719 755 aaKnown RBP12.52□□□□□ -0.41
USP39-214ENST00000474572 ABTB2Q8N961 1025 aa12.52□□□□□ -0.41
USP39-214ENST00000474572 RWDD1Q9H446 243 aaPredicted RBP12.52□□□□□ -0.41
USP39-214ENST00000474572 LAS1LQ9Y4W2 734 aaKnown RBP12.52□□□□□ -0.41
USP39-214ENST00000474572 RGPD2P0DJD1 1756 aa12.51□□□□□ -0.41
USP39-214ENST00000474572 HAP1P54257 671 aaPredicted RBP12.51□□□□□ -0.41
USP39-214ENST00000474572 DCTN1Q14203 1278 aa12.51□□□□□ -0.41
USP39-214ENST00000474572 C8orf58Q8NAV2 365 aa12.51□□□□□ -0.41
USP39-214ENST00000474572 GAS2L2Q8NHY3 880 aa12.51□□□□□ -0.41
USP39-214ENST00000474572 IPO9Q96P70 1041 aaKnown RBP12.51□□□□□ -0.41
USP39-214ENST00000474572 ZBTB40Q9NUA8 1239 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms