RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 NUTM2DQ5VT03 806 aaPredicted RBP8.49□□□□□ -1.05
ATPAF1-204ENST00000474020 NUTM2AQ8IVF1 878 aaPredicted RBP8.49□□□□□ -1.05
ATPAF1-204ENST00000474020 CCDC18Q5T9S5 1454 aa8.49□□□□□ -1.05
ATPAF1-204ENST00000474020 SAMD9Q5K651 1589 aa8.48□□□□□ -1.05
ATPAF1-204ENST00000474020 SETD5Q9C0A6 1442 aa8.48□□□□□ -1.05
ATPAF1-204ENST00000474020 TARBP1Q13395 1621 aaKnown RBP8.48□□□□□ -1.05
ATPAF1-204ENST00000474020 SH3BP2P78314 561 aa8.48□□□□□ -1.05
ATPAF1-204ENST00000474020 ZNF787Q6DD87 383 aa8.48□□□□□ -1.05
ATPAF1-204ENST00000474020 FAM117AQ9C073 453 aa8.48□□□□□ -1.05
ATPAF1-204ENST00000474020 POLR3EQ9NVU0 708 aa8.48□□□□□ -1.05
ATPAF1-204ENST00000474020 PBRM1Q86U86 1689 aa8.47□□□□□ -1.05
ATPAF1-204ENST00000474020 CRIPAKQ8N1N5 446 aa8.47□□□□□ -1.05
ATPAF1-204ENST00000474020 ZNF775Q96BV0 537 aaPredicted RBP8.47□□□□□ -1.05
ATPAF1-204ENST00000474020 F12P00748 615 aaPredicted RBP8.46□□□□□ -1.06
ATPAF1-204ENST00000474020 SMPD1P17405 629 aa8.46□□□□□ -1.06
ATPAF1-204ENST00000474020 CTHP32929 405 aa8.46□□□□□ -1.06
ATPAF1-204ENST00000474020 CTC1Q2NKJ3 1217 aa8.46□□□□□ -1.06
ATPAF1-204ENST00000474020 SH3D19Q5HYK7 790 aa8.46□□□□□ -1.06
ATPAF1-204ENST00000474020 AAASQ9NRG9 546 aa8.46□□□□□ -1.06
ATPAF1-204ENST00000474020 ADAMTS12P58397 1594 aa8.46□□□□□ -1.06
ATPAF1-204ENST00000474020 WDR62O43379 1518 aa8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 EHBP1L1Q8N3D4 1523 aa8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 IQGAP2Q13576 1575 aa8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 HECW1Q76N89 1606 aa8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 SKIV2LQ15477 1246 aaKnown RBP8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 RTL5Q5HYW3 569 aaPredicted RBP8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 EHBP1Q8NDI1 1231 aa8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 HELBQ8NG08 1087 aaPredicted RBP8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 BAP1Q92560 729 aa8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 TSC1Q92574 1164 aa8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 PHLDB1Q86UU1 1377 aa8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 SNAPC4Q5SXM2 1469 aa8.45□□□□□ -1.06
ATPAF1-204ENST00000474020 PLEKHG3A1L390 1219 aa8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 J3QL48 77 aa8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 ST8SIA5O15466 376 aa8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 PER1O15534 1290 aaPredicted RBP8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 SIAH2O43255 324 aa8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 LINC01559Q495D7 138 aa8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 ZNF511Q8NB15 262 aa8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 MAP10Q9P2G4 905 aa8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 ACIN1Q9UKV3 1341 aaKnown RBP8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 RAB3GAP2Q9H2M9 1393 aa8.44□□□□□ -1.06
ATPAF1-204ENST00000474020 SMCPP49901 116 aaPredicted RBP8.43□□□□□ -1.06
ATPAF1-204ENST00000474020 FGD6Q6ZV73 1430 aa8.43□□□□□ -1.06
ATPAF1-204ENST00000474020 SUPT6HQ7KZ85 1726 aaKnown RBP8.43□□□□□ -1.06
ATPAF1-204ENST00000474020 AXIN1O15169 862 aa8.42□□□□□ -1.06
ATPAF1-204ENST00000474020 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.42□□□□□ -1.06
ATPAF1-204ENST00000474020 TIMELESSQ9UNS1 1208 aa8.42□□□□□ -1.06
ATPAF1-204ENST00000474020 MYOM3Q5VTT5 1437 aa8.41□□□□□ -1.06
ATPAF1-204ENST00000474020 ALDH1A1P00352 501 aa8.41□□□□□ -1.06
ATPAF1-204ENST00000474020 VARSP26640 1264 aaKnown RBP8.4□□□□□ -1.06
ATPAF1-204ENST00000474020 PPP2R2DQ66LE6 453 aa8.4□□□□□ -1.06
ATPAF1-204ENST00000474020 PROCA1Q8NCQ7 364 aaPredicted RBP8.4□□□□□ -1.06
ATPAF1-204ENST00000474020 CDK11AQ9UQ88 783 aaPredicted RBP8.4□□□□□ -1.06
ATPAF1-204ENST00000474020 KIAA0586Q9BVV6 1533 aa8.39□□□□□ -1.07
ATPAF1-204ENST00000474020 UGGT2Q9NYU1 1516 aa8.39□□□□□ -1.07
ATPAF1-204ENST00000474020 NCOA2Q15596 1464 aa8.39□□□□□ -1.07
ATPAF1-204ENST00000474020 MAGI1Q96QZ7 1491 aaPredicted RBP8.39□□□□□ -1.07
ATPAF1-204ENST00000474020 NEUROD2Q15784 382 aa8.39□□□□□ -1.07
ATPAF1-204ENST00000474020 HPS1Q92902 700 aa8.39□□□□□ -1.07
ATPAF1-204ENST00000474020 FBXO31Q5XUX0 539 aaPredicted RBP8.38□□□□□ -1.07
ATPAF1-204ENST00000474020 MPNDQ8N594 471 aa8.38□□□□□ -1.07
ATPAF1-204ENST00000474020 POTECB2RU33 542 aa8.37□□□□□ -1.07
ATPAF1-204ENST00000474020 CTDSPL2Q05D32 466 aa8.37□□□□□ -1.07
ATPAF1-204ENST00000474020 ARMC2Q8NEN0 867 aa8.37□□□□□ -1.07
ATPAF1-204ENST00000474020 DACH1Q9UI36 760 aa8.37□□□□□ -1.07
ATPAF1-204ENST00000474020 GRIN2AQ12879 1464 aa8.37□□□□□ -1.07
ATPAF1-204ENST00000474020 CARMIL2Q6F5E8 1435 aa8.37□□□□□ -1.07
ATPAF1-204ENST00000474020 MIA2Q96PC5 1412 aa8.37□□□□□ -1.07
ATPAF1-204ENST00000474020 EIF4G3O43432 1585 aaKnown RBP8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 EPRSP07814 1512 aaKnown RBP8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 TPRNQ4KMQ1 711 aa8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 FAM174AQ8TBP5 190 aa8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 CHMP7Q8WUX9 453 aaPredicted RBP8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 FOXJ1Q92949 421 aa8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 GOPCQ9HD26 462 aa8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 TLL2Q9Y6L7 1015 aa8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 WASF2Q9Y6W5 498 aa8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 HFM1A2PYH4 1435 aa8.36□□□□□ -1.07
ATPAF1-204ENST00000474020 SYNJ2O15056 1496 aa8.35□□□□□ -1.07
ATPAF1-204ENST00000474020 NBPF14Q5TI25 921 aa8.35□□□□□ -1.07
ATPAF1-204ENST00000474020 PTPN23Q9H3S7 1636 aa8.35□□□□□ -1.07
ATPAF1-204ENST00000474020 ZNF608Q9ULD9 1512 aaPredicted RBP8.34□□□□□ -1.07
ATPAF1-204ENST00000474020 KIAA0556O60303 1618 aa8.34□□□□□ -1.07
ATPAF1-204ENST00000474020 BRPF1P55201 1214 aaPredicted RBP8.34□□□□□ -1.07
ATPAF1-204ENST00000474020 BPHLQ86WA6 291 aaPredicted RBP8.34□□□□□ -1.07
ATPAF1-204ENST00000474020 TONSLQ96HA7 1378 aa8.34□□□□□ -1.07
ATPAF1-204ENST00000474020 MAPKBP1O60336 1514 aa8.34□□□□□ -1.08
ATPAF1-204ENST00000474020 TCOF1Q13428 1488 aaKnown RBP8.33□□□□□ -1.08
ATPAF1-204ENST00000474020 AGERQ15109 404 aa8.33□□□□□ -1.08
ATPAF1-204ENST00000474020 C4orf48Q5BLP8 95 aa8.33□□□□□ -1.08
ATPAF1-204ENST00000474020 AKNAQ7Z591 1439 aa8.33□□□□□ -1.08
ATPAF1-204ENST00000474020 LRRN4Q8WUT4 740 aa8.33□□□□□ -1.08
ATPAF1-204ENST00000474020 GPKOWQ92917 476 aaPredicted RBP eCLIP8.33□□□□□ -1.08
ATPAF1-204ENST00000474020 UACAQ9BZF9 1416 aa8.33□□□□□ -1.08
ATPAF1-204ENST00000474020 ATP13A2Q9NQ11 1180 aa8.33□□□□□ -1.08
ATPAF1-204ENST00000474020 GMPR2Q9P2T1 348 aaKnown RBP8.33□□□□□ -1.08
ATPAF1-204ENST00000474020 NEUROD1Q13562 356 aa8.32□□□□□ -1.08
ATPAF1-204ENST00000474020 SH3RF1Q7Z6J0 888 aa8.32□□□□□ -1.08
ATPAF1-204ENST00000474020 CDK15Q96Q40 435 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms