RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 NWD1Q149M9 1564 aa8.12□□□□□ -1.11
CLK1-210ENST00000473565 MARF1Q9Y4F3 1742 aaKnown RBP8.12□□□□□ -1.11
CLK1-210ENST00000473565 CCDC27Q2M243 656 aa8.12□□□□□ -1.11
CLK1-210ENST00000473565 PELP1Q8IZL8 1130 aaKnown RBP8.12□□□□□ -1.11
CLK1-210ENST00000473565 NGEFQ8N5V2 710 aa8.12□□□□□ -1.11
CLK1-210ENST00000473565 LTV1Q96GA3 475 aaPredicted RBP8.12□□□□□ -1.11
CLK1-210ENST00000473565 TSHZ2Q9NRE2 1034 aa8.12□□□□□ -1.11
CLK1-210ENST00000473565 TMEM94Q12767 1356 aa8.11□□□□□ -1.11
CLK1-210ENST00000473565 FAM83GA6ND36 823 aa8.11□□□□□ -1.11
CLK1-210ENST00000473565 AMPHP49418 695 aa8.11□□□□□ -1.11
CLK1-210ENST00000473565 LAS1LQ9Y4W2 734 aaKnown RBP8.11□□□□□ -1.11
CLK1-210ENST00000473565 FANCIQ9NVI1 1328 aa8.11□□□□□ -1.11
CLK1-210ENST00000473565 DCTN1Q14203 1278 aa8.11□□□□□ -1.11
CLK1-210ENST00000473565 TNNQ9UQP3 1299 aa8.11□□□□□ -1.11
CLK1-210ENST00000473565 NEFMP07197 916 aa8.1□□□□□ -1.11
CLK1-210ENST00000473565 EXOSC9Q06265 439 aaKnown RBP8.1□□□□□ -1.11
CLK1-210ENST00000473565 NFE2L2Q16236 605 aa8.1□□□□□ -1.11
CLK1-210ENST00000473565 FRAT1Q92837 279 aaPredicted RBP8.1□□□□□ -1.11
CLK1-210ENST00000473565 DLG5Q8TDM6 1919 aa8.1□□□□□ -1.11
CLK1-210ENST00000473565 LMTK3Q96Q04 1460 aa8.1□□□□□ -1.11
CLK1-210ENST00000473565 C19orf44Q9H6X5 657 aa8.09□□□□□ -1.11
CLK1-210ENST00000473565 PNNQ9H307 717 aaKnown RBP8.09□□□□□ -1.11
CLK1-210ENST00000473565 MYH16Q9H6N6 1097 aa8.09□□□□□ -1.11
CLK1-210ENST00000473565 SBNO1A3KN83 1393 aa8.09□□□□□ -1.11
CLK1-210ENST00000473565 RARSP54136 660 aaKnown RBP8.08□□□□□ -1.12
CLK1-210ENST00000473565 SKAP1Q86WV1 359 aa8.08□□□□□ -1.12
CLK1-210ENST00000473565 USHBP1Q8N6Y0 703 aa8.08□□□□□ -1.12
CLK1-210ENST00000473565 PANK1Q8TE04 598 aa8.08□□□□□ -1.12
CLK1-210ENST00000473565 FLT4P35916 1363 aa8.08□□□□□ -1.12
CLK1-210ENST00000473565 C1orf167Q5SNV9 1468 aa8.08□□□□□ -1.12
CLK1-210ENST00000473565 CANXP27824 592 aaKnown RBP8.08□□□□□ -1.12
CLK1-210ENST00000473565 HOXC9P31274 260 aa8.08□□□□□ -1.12
CLK1-210ENST00000473565 STRCQ7RTU9 1775 aa8.08□□□□□ -1.12
CLK1-210ENST00000473565 ATF3P18847 181 aa8.08□□□□□ -1.12
CLK1-210ENST00000473565 EYA1Q99502 592 aa8.08□□□□□ -1.12
CLK1-210ENST00000473565 ZNF335Q9H4Z2 1342 aaPredicted RBP8.08□□□□□ -1.12
CLK1-210ENST00000473565 KRT28Q7Z3Y7 464 aa8.07□□□□□ -1.12
CLK1-210ENST00000473565 ELL2O00472 640 aaPredicted RBP8.07□□□□□ -1.12
CLK1-210ENST00000473565 MCM10Q7L590 875 aa8.07□□□□□ -1.12
CLK1-210ENST00000473565 CLUAP1Q96AJ1 413 aa8.07□□□□□ -1.12
CLK1-210ENST00000473565 RGPD1P0DJD0 1748 aa8.07□□□□□ -1.12
CLK1-210ENST00000473565 LTN1O94822 1766 aa8.07□□□□□ -1.12
CLK1-210ENST00000473565 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.07□□□□□ -1.12
CLK1-210ENST00000473565 MST1RQ04912 1400 aa8.06□□□□□ -1.12
CLK1-210ENST00000473565 TCERG1O14776 1098 aaKnown RBP8.06□□□□□ -1.12
CLK1-210ENST00000473565 COG6Q9Y2V7 657 aa8.06□□□□□ -1.12
CLK1-210ENST00000473565 RLBP1P12271 317 aa8.06□□□□□ -1.12
CLK1-210ENST00000473565 NCBP3Q53F19 620 aaKnown RBP8.05□□□□□ -1.12
CLK1-210ENST00000473565 TSPYL6Q8N831 410 aa8.05□□□□□ -1.12
CLK1-210ENST00000473565 SSH1Q8WYL5 1049 aa8.05□□□□□ -1.12
CLK1-210ENST00000473565 MTHFSDQ2M296 383 aaKnown RBP8.05□□□□□ -1.12
CLK1-210ENST00000473565 LRRC59Q96AG4 307 aaKnown RBP8.05□□□□□ -1.12
CLK1-210ENST00000473565 MBIPQ9NS73 344 aa8.05□□□□□ -1.12
CLK1-210ENST00000473565 NFAT5O94916 1531 aa8.05□□□□□ -1.12
CLK1-210ENST00000473565 XIRP1Q702N8 1843 aaKnown RBP8.05□□□□□ -1.12
CLK1-210ENST00000473565 CABLES1Q8TDN4 633 aa8.05□□□□□ -1.12
CLK1-210ENST00000473565 SMC4Q9NTJ3 1288 aa8.05□□□□□ -1.12
CLK1-210ENST00000473565 IL16Q14005 1332 aa8.04□□□□□ -1.12
CLK1-210ENST00000473565 IGSF1Q8N6C5 1336 aa8.04□□□□□ -1.12
CLK1-210ENST00000473565 GCP02774 474 aa8.04□□□□□ -1.12
CLK1-210ENST00000473565 ZC3H6P61129 1189 aaKnown RBP8.04□□□□□ -1.12
CLK1-210ENST00000473565 KRT24Q2M2I5 525 aa8.04□□□□□ -1.12
CLK1-210ENST00000473565 MIS18AQ9NYP9 233 aa8.04□□□□□ -1.12
CLK1-210ENST00000473565 USP54Q70EL1 1684 aa8.04□□□□□ -1.12
CLK1-210ENST00000473565 ARHGEF10O15013 1369 aa8.04□□□□□ -1.12
CLK1-210ENST00000473565 TRPM3Q9HCF6 1732 aaPredicted RBP8.04□□□□□ -1.12
CLK1-210ENST00000473565 RGPD2P0DJD1 1756 aa8.04□□□□□ -1.12
CLK1-210ENST00000473565 NBPF6Q5VWK0 638 aa8.03□□□□□ -1.12
CLK1-210ENST00000473565 NBPF4Q96M43 638 aa8.03□□□□□ -1.12
CLK1-210ENST00000473565 C8orf58Q8NAV2 365 aa8.03□□□□□ -1.12
CLK1-210ENST00000473565 MSH6P52701 1360 aa8.03□□□□□ -1.12
CLK1-210ENST00000473565 CADPS2Q86UW7 1296 aa8.03□□□□□ -1.12
CLK1-210ENST00000473565 IP6K1Q92551 441 aa8.03□□□□□ -1.12
CLK1-210ENST00000473565 AXIN2Q9Y2T1 843 aa8.03□□□□□ -1.12
CLK1-210ENST00000473565 KDRP35968 1356 aa8.02□□□□□ -1.12
CLK1-210ENST00000473565 ZNF853P0CG23 659 aa8.02□□□□□ -1.13
CLK1-210ENST00000473565 GNAI1P63096 354 aa8.02□□□□□ -1.13
CLK1-210ENST00000473565 LMOD3Q0VAK6 560 aa8.02□□□□□ -1.13
CLK1-210ENST00000473565 KCNH5Q8NCM2 988 aa8.02□□□□□ -1.13
CLK1-210ENST00000473565 IFT57Q9NWB7 429 aa8.02□□□□□ -1.13
CLK1-210ENST00000473565 NOB1Q9ULX3 412 aaKnown RBP8.02□□□□□ -1.13
CLK1-210ENST00000473565 KIF1AQ12756 1690 aa8.02□□□□□ -1.13
CLK1-210ENST00000473565 PDE3AQ14432 1141 aa8.01□□□□□ -1.13
CLK1-210ENST00000473565 ARHGEF25Q86VW2 580 aa8.01□□□□□ -1.13
CLK1-210ENST00000473565 CFAP44Q96MT7 982 aa8.01□□□□□ -1.13
CLK1-210ENST00000473565 TRIM27P14373 513 aa8.01□□□□□ -1.13
CLK1-210ENST00000473565 RBM19Q9Y4C8 960 aaKnown RBP8.01□□□□□ -1.13
CLK1-210ENST00000473565 RGPD5Q99666 1765 aa8.01□□□□□ -1.13
CLK1-210ENST00000473565 MED1Q15648 1581 aaPredicted RBP8.01□□□□□ -1.13
CLK1-210ENST00000473565 VAMP4O75379 141 aa8.01□□□□□ -1.13
CLK1-210ENST00000473565 ZKSCAN2Q63HK3 967 aa8.01□□□□□ -1.13
CLK1-210ENST00000473565 BRINP3Q76B58 766 aa8.01□□□□□ -1.13
CLK1-210ENST00000473565 USP19O94966 1318 aa8□□□□□ -1.13
CLK1-210ENST00000473565 SLIT3O75094 1523 aa8□□□□□ -1.13
CLK1-210ENST00000473565 ALS2Q96Q42 1657 aa8□□□□□ -1.13
CLK1-210ENST00000473565 CALD1Q05682 793 aaKnown RBP8□□□□□ -1.13
CLK1-210ENST00000473565 CHRNA2Q15822 529 aa8□□□□□ -1.13
CLK1-210ENST00000473565 TWISTNBQ3B726 338 aaPredicted RBP8□□□□□ -1.13
CLK1-210ENST00000473565 RTL1A6NKG5 1358 aa8□□□□□ -1.13
CLK1-210ENST00000473565 DCCP43146 1447 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms