RNA–Protein interactions for RNA: ENST00000473562.1

NOTCH4-203, Transcript of notch 4, humanhuman

TSL 1 (best)

Gene NOTCH4, Length 3,075 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH4-203ENST00000473562 NRXN1Q9ULB1 1477 aa16.35■□□□□ 0.21
NOTCH4-203ENST00000473562 HDGFL2Q7Z4V5 671 aaPredicted RBP16.35■□□□□ 0.21
NOTCH4-203ENST00000473562 RNF214Q8ND24 703 aa16.35■□□□□ 0.21
NOTCH4-203ENST00000473562 INO80Q9ULG1 1556 aaPredicted RBP16.35■□□□□ 0.21
NOTCH4-203ENST00000473562 CT47B1P0C2W7 299 aaPredicted RBP16.34■□□□□ 0.21
NOTCH4-203ENST00000473562 ADGRB3O60242 1522 aa16.34■□□□□ 0.21
NOTCH4-203ENST00000473562 AEBP1Q8IUX7 1158 aa16.34■□□□□ 0.21
NOTCH4-203ENST00000473562 PLEKHM2Q8IWE5 1019 aa16.34■□□□□ 0.21
NOTCH4-203ENST00000473562 KIAA1211Q6ZU35 1233 aa16.34■□□□□ 0.21
NOTCH4-203ENST00000473562 NSFL1CQ9UNZ2 370 aaKnown RBP16.34■□□□□ 0.21
NOTCH4-203ENST00000473562 GLI2P10070 1586 aa16.34■□□□□ 0.21
NOTCH4-203ENST00000473562 ASXL2Q76L83 1435 aa16.33■□□□□ 0.2
NOTCH4-203ENST00000473562 NCOA3Q9Y6Q9 1424 aa16.33■□□□□ 0.2
NOTCH4-203ENST00000473562 CDC45O75419 566 aa16.33■□□□□ 0.2
NOTCH4-203ENST00000473562 SLC4A10Q6U841 1118 aa16.33■□□□□ 0.2
NOTCH4-203ENST00000473562 MCM10Q7L590 875 aa16.33■□□□□ 0.2
NOTCH4-203ENST00000473562 OSCARQ8IYS5 282 aa16.32■□□□□ 0.2
NOTCH4-203ENST00000473562 NECTIN2Q92692 538 aa16.32■□□□□ 0.2
NOTCH4-203ENST00000473562 ZMYND15Q9H091 742 aa16.32■□□□□ 0.2
NOTCH4-203ENST00000473562 IFT172Q9UG01 1749 aa16.32■□□□□ 0.2
NOTCH4-203ENST00000473562 NFE2L2Q16236 605 aa16.32■□□□□ 0.2
NOTCH4-203ENST00000473562 CAMSAP1Q5T5Y3 1602 aa16.32■□□□□ 0.2
NOTCH4-203ENST00000473562 FCHSD2O94868 740 aa16.31■□□□□ 0.2
NOTCH4-203ENST00000473562 XPCQ01831 940 aaPredicted RBP16.31■□□□□ 0.2
NOTCH4-203ENST00000473562 KIDINS220Q9ULH0 1771 aa16.31■□□□□ 0.2
NOTCH4-203ENST00000473562 GOLGA6L22H0YM25 854 aa16.31■□□□□ 0.2
NOTCH4-203ENST00000473562 ALDH1L2Q3SY69 923 aa16.31■□□□□ 0.2
NOTCH4-203ENST00000473562 GCC1Q96CN9 775 aa16.31■□□□□ 0.2
NOTCH4-203ENST00000473562 ZMYM3Q14202 1370 aa16.31■□□□□ 0.2
NOTCH4-203ENST00000473562 F6X3S4 739 aa16.3■□□□□ 0.2
NOTCH4-203ENST00000473562 PRIM1P49642 420 aaKnown RBP16.3■□□□□ 0.2
NOTCH4-203ENST00000473562 MLECQ14165 292 aa16.3■□□□□ 0.2
NOTCH4-203ENST00000473562 RBSNQ9H1K0 784 aa16.3■□□□□ 0.2
NOTCH4-203ENST00000473562 ADGRB2O60241 1585 aa16.3■□□□□ 0.2
NOTCH4-203ENST00000473562 MYO3AQ8NEV4 1616 aa16.3■□□□□ 0.2
NOTCH4-203ENST00000473562 COL3A1P02461 1466 aaPredicted RBP16.3■□□□□ 0.2
NOTCH4-203ENST00000473562 MEIS3Q99687 375 aa16.3■□□□□ 0.2
NOTCH4-203ENST00000473562 SDSP20132 328 aa16.29■□□□□ 0.2
NOTCH4-203ENST00000473562 GDPD2Q9HCC8 539 aa16.29■□□□□ 0.2
NOTCH4-203ENST00000473562 R3HCC1Q9Y3T6 440 aaKnown RBP16.29■□□□□ 0.2
NOTCH4-203ENST00000473562 LRRC7Q96NW7 1537 aa16.29■□□□□ 0.2
NOTCH4-203ENST00000473562 CALD1Q05682 793 aaKnown RBP16.29■□□□□ 0.2
NOTCH4-203ENST00000473562 IL16Q14005 1332 aa16.28■□□□□ 0.2
NOTCH4-203ENST00000473562 ZSCAN23Q3MJ62 389 aa16.28■□□□□ 0.2
NOTCH4-203ENST00000473562 SYCE3A1L190 88 aa16.28■□□□□ 0.2
NOTCH4-203ENST00000473562 NPM1P06748 294 aaKnown RBP eCLIP16.28■□□□□ 0.2
NOTCH4-203ENST00000473562 LARP6Q9BRS8 491 aaKnown RBP16.28■□□□□ 0.2
NOTCH4-203ENST00000473562 ZC3H13Q5T200 1668 aaKnown RBP16.28■□□□□ 0.2
NOTCH4-203ENST00000473562 NSD2O96028 1365 aa16.28■□□□□ 0.2
NOTCH4-203ENST00000473562 CIZ1Q9ULV3 898 aaPredicted RBP16.27■□□□□ 0.2
NOTCH4-203ENST00000473562 PPLO60437 1756 aa16.27■□□□□ 0.2
NOTCH4-203ENST00000473562 ANP32BQ92688 251 aaKnown RBP16.27■□□□□ 0.2
NOTCH4-203ENST00000473562 FAM13BQ9NYF5 915 aa16.27■□□□□ 0.2
NOTCH4-203ENST00000473562 GPT2Q8TD30 523 aa16.27■□□□□ 0.19
NOTCH4-203ENST00000473562 MSNP26038 577 aaKnown RBP16.26■□□□□ 0.19
NOTCH4-203ENST00000473562 GNAI1P63096 354 aa16.26■□□□□ 0.19
NOTCH4-203ENST00000473562 SKOR2Q2VWA4 1001 aaPredicted RBP16.26■□□□□ 0.19
NOTCH4-203ENST00000473562 TTC22Q5TAA0 569 aa16.26■□□□□ 0.19
NOTCH4-203ENST00000473562 JARID2Q92833 1246 aaPredicted RBP16.26■□□□□ 0.19
NOTCH4-203ENST00000473562 USP26Q9BXU7 913 aa16.26■□□□□ 0.19
NOTCH4-203ENST00000473562 CD163L1Q9NR16 1453 aa16.26■□□□□ 0.19
NOTCH4-203ENST00000473562 EXOC6BQ9Y2D4 811 aa16.26■□□□□ 0.19
NOTCH4-203ENST00000473562 SETBP1Q9Y6X0 1596 aa16.26■□□□□ 0.19
NOTCH4-203ENST00000473562 LMBRD1Q9NUN5 540 aa16.25■□□□□ 0.19
NOTCH4-203ENST00000473562 KLHL40Q2TBA0 621 aa16.25■□□□□ 0.19
NOTCH4-203ENST00000473562 TXNDC2Q86VQ3 553 aa16.25■□□□□ 0.19
NOTCH4-203ENST00000473562 ZDHHC9Q9Y397 364 aa16.25■□□□□ 0.19
NOTCH4-203ENST00000473562 RPGRIP1LQ68CZ1 1315 aa16.25■□□□□ 0.19
NOTCH4-203ENST00000473562 ARHGEF28Q8N1W1 1705 aaKnown RBP16.25■□□□□ 0.19
NOTCH4-203ENST00000473562 PKNOX2Q96KN3 472 aa16.25■□□□□ 0.19
NOTCH4-203ENST00000473562 SULT6B1Q6IMI4 303 aa16.24■□□□□ 0.19
NOTCH4-203ENST00000473562 ABCC4O15439 1325 aa16.24■□□□□ 0.19
NOTCH4-203ENST00000473562 ABCA9Q8IUA7 1624 aa16.24■□□□□ 0.19
NOTCH4-203ENST00000473562 FOXO3O43524 673 aa16.24■□□□□ 0.19
NOTCH4-203ENST00000473562 NEK4P51957 841 aa16.24■□□□□ 0.19
NOTCH4-203ENST00000473562 G2E3Q7L622 706 aa16.23■□□□□ 0.19
NOTCH4-203ENST00000473562 ZNF428Q96B54 188 aa16.23■□□□□ 0.19
NOTCH4-203ENST00000473562 UPF3BQ9BZI7 483 aaKnown RBP16.23■□□□□ 0.19
NOTCH4-203ENST00000473562 TMEM63CQ9P1W3 806 aa16.23■□□□□ 0.19
NOTCH4-203ENST00000473562 YTHDC2Q9H6S0 1430 aaKnown RBP16.23■□□□□ 0.19
NOTCH4-203ENST00000473562 UHRF1BP1LA0JNW5 1464 aa16.23■□□□□ 0.19
NOTCH4-203ENST00000473562 IL13P35225 146 aa16.23■□□□□ 0.19
NOTCH4-203ENST00000473562 CCDC173Q0VFZ6 552 aa16.22■□□□□ 0.19
NOTCH4-203ENST00000473562 ZSCAN30Q86W11 494 aa16.22■□□□□ 0.19
NOTCH4-203ENST00000473562 SIGLEC1Q9BZZ2 1709 aa16.22■□□□□ 0.19
NOTCH4-203ENST00000473562 CFAP74Q9C0B2 1584 aa16.22■□□□□ 0.19
NOTCH4-203ENST00000473562 MAP4K4O95819 1239 aaPredicted RBP16.22■□□□□ 0.19
NOTCH4-203ENST00000473562 DCTPP1Q9H773 170 aa16.22■□□□□ 0.19
NOTCH4-203ENST00000473562 IFT57Q9NWB7 429 aa16.22■□□□□ 0.19
NOTCH4-203ENST00000473562 MSH6P52701 1360 aa16.21■□□□□ 0.19
NOTCH4-203ENST00000473562 SLC4A2P04920 1241 aa16.21■□□□□ 0.19
NOTCH4-203ENST00000473562 RABEP1Q15276 862 aa16.21■□□□□ 0.19
NOTCH4-203ENST00000473562 GLIPR1L2Q4G1C9 344 aa16.21■□□□□ 0.19
NOTCH4-203ENST00000473562 CFAP44Q96MT7 982 aa16.21■□□□□ 0.19
NOTCH4-203ENST00000473562 FAM135BQ49AJ0 1406 aa16.21■□□□□ 0.19
NOTCH4-203ENST00000473562 CEP85Q6P2H3 762 aa16.21■□□□□ 0.19
NOTCH4-203ENST00000473562 RILPL2Q969X0 211 aa16.21■□□□□ 0.19
NOTCH4-203ENST00000473562 FRMPD1Q5SYB0 1578 aa16.21■□□□□ 0.18
NOTCH4-203ENST00000473562 RRP9O43818 475 aaKnown RBP16.2■□□□□ 0.18
NOTCH4-203ENST00000473562 PALD1Q9ULE6 856 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms