RNA–Protein interactions for RNA: ENST00000472318.1

SCAF4-205, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 3

Gene SCAF4, Length 796 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-205ENST00000472318 DACH1Q9UI36 760 aa12.19□□□□□ -0.46
SCAF4-205ENST00000472318 MAP10Q9P2G4 905 aa12.18□□□□□ -0.46
SCAF4-205ENST00000472318 NUTM2BA6NNL0 878 aaPredicted RBP12.17□□□□□ -0.46
SCAF4-205ENST00000472318 NUTM2EB1AL46 878 aaPredicted RBP12.17□□□□□ -0.46
SCAF4-205ENST00000472318 PER1O15534 1290 aaPredicted RBP12.17□□□□□ -0.46
SCAF4-205ENST00000472318 CTHP32929 405 aa12.17□□□□□ -0.46
SCAF4-205ENST00000472318 NUTM2DQ5VT03 806 aaPredicted RBP12.17□□□□□ -0.46
SCAF4-205ENST00000472318 NUTM2AQ8IVF1 878 aaPredicted RBP12.17□□□□□ -0.46
SCAF4-205ENST00000472318 HPS1Q92902 700 aa12.17□□□□□ -0.46
SCAF4-205ENST00000472318 FHAD1B1AJZ9 1412 aa12.17□□□□□ -0.46
SCAF4-205ENST00000472318 ALDH1A1P00352 501 aa12.16□□□□□ -0.46
SCAF4-205ENST00000472318 RTL5Q5HYW3 569 aaPredicted RBP12.14□□□□□ -0.47
SCAF4-205ENST00000472318 DDRGK1Q96HY6 314 aa12.14□□□□□ -0.47
SCAF4-205ENST00000472318 POLR3EQ9NVU0 708 aa12.14□□□□□ -0.47
SCAF4-205ENST00000472318 PPRC1Q5VV67 1664 aaKnown RBP12.13□□□□□ -0.47
SCAF4-205ENST00000472318 SH3D19Q5HYK7 790 aa12.13□□□□□ -0.47
SCAF4-205ENST00000472318 HELBQ8NG08 1087 aaPredicted RBP12.13□□□□□ -0.47
SCAF4-205ENST00000472318 TSC1Q92574 1164 aa12.13□□□□□ -0.47
SCAF4-205ENST00000472318 VARSP26640 1264 aaKnown RBP12.12□□□□□ -0.47
SCAF4-205ENST00000472318 ZNF775Q96BV0 537 aaPredicted RBP12.12□□□□□ -0.47
SCAF4-205ENST00000472318 FAM117AQ9C073 453 aa12.12□□□□□ -0.47
SCAF4-205ENST00000472318 SKIV2LQ15477 1246 aaKnown RBP12.11□□□□□ -0.47
SCAF4-205ENST00000472318 MPNDQ8N594 471 aa12.11□□□□□ -0.47
SCAF4-205ENST00000472318 GMPR2Q9P2T1 348 aaKnown RBP12.11□□□□□ -0.47
SCAF4-205ENST00000472318 TLL2Q9Y6L7 1015 aa12.11□□□□□ -0.47
SCAF4-205ENST00000472318 ATP13A2Q9NQ11 1180 aa12.1□□□□□ -0.47
SCAF4-205ENST00000472318 PLEKHG3A1L390 1219 aa12.09□□□□□ -0.47
SCAF4-205ENST00000472318 ARXQ96QS3 562 aa12.08□□□□□ -0.48
SCAF4-205ENST00000472318 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.08□□□□□ -0.48
SCAF4-205ENST00000472318 WASF2Q9Y6W5 498 aa12.08□□□□□ -0.48
SCAF4-205ENST00000472318 GLI2P10070 1586 aa12.07□□□□□ -0.48
SCAF4-205ENST00000472318 ASXL2Q76L83 1435 aa12.07□□□□□ -0.48
SCAF4-205ENST00000472318 FOXJ1Q92949 421 aa12.07□□□□□ -0.48
SCAF4-205ENST00000472318 TOP2BQ02880 1626 aa12.07□□□□□ -0.48
SCAF4-205ENST00000472318 FBXO31Q5XUX0 539 aaPredicted RBP12.05□□□□□ -0.48
SCAF4-205ENST00000472318 FAM174AQ8TBP5 190 aa12.05□□□□□ -0.48
SCAF4-205ENST00000472318 RUSC2Q8N2Y8 1516 aa12.05□□□□□ -0.48
SCAF4-205ENST00000472318 C11orf95C9JLR9 678 aaPredicted RBP12.04□□□□□ -0.48
SCAF4-205ENST00000472318 C4orf48Q5BLP8 95 aa12.04□□□□□ -0.48
SCAF4-205ENST00000472318 PPP2R2DQ66LE6 453 aa12.04□□□□□ -0.48
SCAF4-205ENST00000472318 ARMC2Q8NEN0 867 aa12.04□□□□□ -0.48
SCAF4-205ENST00000472318 PLB1Q6P1J6 1458 aa12.03□□□□□ -0.48
SCAF4-205ENST00000472318 BPHLQ86WA6 291 aaPredicted RBP12.03□□□□□ -0.48
SCAF4-205ENST00000472318 PROCA1Q8NCQ7 364 aaPredicted RBP12.03□□□□□ -0.48
SCAF4-205ENST00000472318 CTDSPL2Q05D32 466 aa12.02□□□□□ -0.49
SCAF4-205ENST00000472318 NBPF14Q5TI25 921 aa12.02□□□□□ -0.49
SCAF4-205ENST00000472318 SH3RF1Q7Z6J0 888 aa12.02□□□□□ -0.49
SCAF4-205ENST00000472318 TRIM47Q96LD4 638 aa12.02□□□□□ -0.49
SCAF4-205ENST00000472318 CDK15Q96Q40 435 aa12.02□□□□□ -0.49
SCAF4-205ENST00000472318 SENP2Q9HC62 589 aa12.02□□□□□ -0.49
SCAF4-205ENST00000472318 TTBK1Q5TCY1 1321 aaPredicted RBP12.02□□□□□ -0.49
SCAF4-205ENST00000472318 WRNQ14191 1432 aaPredicted RBP eCLIP12.02□□□□□ -0.49
SCAF4-205ENST00000472318 ERICH3Q5RHP9 1530 aa12.01□□□□□ -0.49
SCAF4-205ENST00000472318 ADH1CP00326 375 aa12.01□□□□□ -0.49
SCAF4-205ENST00000472318 NNTQ13423 1086 aa12.01□□□□□ -0.49
SCAF4-205ENST00000472318 ABCC2Q92887 1545 aa12.01□□□□□ -0.49
SCAF4-205ENST00000472318 CAPN5O15484 640 aaPredicted RBP12□□□□□ -0.49
SCAF4-205ENST00000472318 TPRNQ4KMQ1 711 aa12□□□□□ -0.49
SCAF4-205ENST00000472318 C1QTNF2Q9BXJ5 285 aa12□□□□□ -0.49
SCAF4-205ENST00000472318 PTPRGP23470 1445 aa12□□□□□ -0.49
SCAF4-205ENST00000472318 AGERQ15109 404 aa11.99□□□□□ -0.49
SCAF4-205ENST00000472318 SH3BP5LQ7L8J4 393 aa11.99□□□□□ -0.49
SCAF4-205ENST00000472318 PTPRMP28827 1452 aa11.99□□□□□ -0.49
SCAF4-205ENST00000472318 EPRSP07814 1512 aaKnown RBP11.99□□□□□ -0.49
SCAF4-205ENST00000472318 TEX14Q8IWB6 1497 aa11.98□□□□□ -0.49
SCAF4-205ENST00000472318 GPKOWQ92917 476 aaPredicted RBP eCLIP11.98□□□□□ -0.492e-6■■■□□ 15.9
SCAF4-205ENST00000472318 BMP1P13497 986 aa11.97□□□□□ -0.49
SCAF4-205ENST00000472318 SNRPBP14678 240 aaKnown RBP11.97□□□□□ -0.49
SCAF4-205ENST00000472318 LRRN4Q8WUT4 740 aa11.97□□□□□ -0.49
SCAF4-205ENST00000472318 KIFC2Q96AC6 838 aa11.97□□□□□ -0.49
SCAF4-205ENST00000472318 TRIM46Q7Z4K8 759 aa11.96□□□□□ -0.49
SCAF4-205ENST00000472318 GOPCQ9HD26 462 aa11.96□□□□□ -0.49
SCAF4-205ENST00000472318 MAP3K4Q9Y6R4 1608 aa11.96□□□□□ -0.5
SCAF4-205ENST00000472318 PCF11O94913 1555 aaKnown RBP11.96□□□□□ -0.5
SCAF4-205ENST00000472318 SPATA31D1Q6ZQQ2 1576 aa11.96□□□□□ -0.5
SCAF4-205ENST00000472318 TIMP2P16035 220 aa11.95□□□□□ -0.5
SCAF4-205ENST00000472318 LCE2AQ5TA79 106 aaPredicted RBP11.95□□□□□ -0.5
SCAF4-205ENST00000472318 TRMT44Q8IYL2 757 aaKnown RBP11.95□□□□□ -0.5
SCAF4-205ENST00000472318 KLF16Q9BXK1 252 aaPredicted RBP11.95□□□□□ -0.5
SCAF4-205ENST00000472318 HSPA2P54652 639 aa11.94□□□□□ -0.5
SCAF4-205ENST00000472318 MAP4K5Q9Y4K4 846 aa11.94□□□□□ -0.5
SCAF4-205ENST00000472318 KIAA0586Q9BVV6 1533 aa11.94□□□□□ -0.5
SCAF4-205ENST00000472318 GRM5P41594 1212 aa11.93□□□□□ -0.5
SCAF4-205ENST00000472318 NR5A1Q13285 461 aa11.93□□□□□ -0.5
SCAF4-205ENST00000472318 ARID5BQ14865 1188 aa11.93□□□□□ -0.5
SCAF4-205ENST00000472318 NEUROD2Q15784 382 aa11.93□□□□□ -0.5
SCAF4-205ENST00000472318 NR3C2P08235 984 aa11.92□□□□□ -0.5
SCAF4-205ENST00000472318 WDR4P57081 412 aaKnown RBP11.92□□□□□ -0.5
SCAF4-205ENST00000472318 TREML4Q6UXN2 200 aa11.92□□□□□ -0.5
SCAF4-205ENST00000472318 FKBPLQ9UIM3 349 aa11.92□□□□□ -0.5
SCAF4-205ENST00000472318 ATP1B4Q9UN42 357 aaPredicted RBP11.92□□□□□ -0.5
SCAF4-205ENST00000472318 KIF21BO75037 1637 aa11.92□□□□□ -0.5
SCAF4-205ENST00000472318 ZC3H4Q9UPT8 1303 aaKnown RBP11.91□□□□□ -0.5
SCAF4-205ENST00000472318 MAGEB6P1A0A0J9YX57 407 aa11.91□□□□□ -0.5
SCAF4-205ENST00000472318 TNIKQ9UKE5 1360 aa11.91□□□□□ -0.5
SCAF4-205ENST00000472318 AP1G2O75843 785 aa11.9□□□□□ -0.5
SCAF4-205ENST00000472318 NR6A1Q15406 480 aa11.9□□□□□ -0.5
SCAF4-205ENST00000472318 PDXDC2PQ6P474 469 aa11.9□□□□□ -0.5
SCAF4-205ENST00000472318 TIMELESSQ9UNS1 1208 aa11.9□□□□□ -0.5
SCAF4-205ENST00000472318 UHRF1BP1LA0JNW5 1464 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms