RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NEK4P51957 841 aa15.65■□□□□ 0.1
COL6A3-209ENST00000472056 PTPN14Q15678 1187 aa15.65■□□□□ 0.1
COL6A3-209ENST00000472056 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.65■□□□□ 0.1
COL6A3-209ENST00000472056 EPB41L2O43491 1005 aaKnown RBP15.65■□□□□ 0.1
COL6A3-209ENST00000472056 LNPKQ9C0E8 428 aa15.65■□□□□ 0.1
COL6A3-209ENST00000472056 APAF1O14727 1248 aa15.65■□□□□ 0.1
COL6A3-209ENST00000472056 MCM4P33991 863 aa15.65■□□□□ 0.1
COL6A3-209ENST00000472056 RNF214Q8ND24 703 aa15.65■□□□□ 0.1
COL6A3-209ENST00000472056 CCT4P50991 539 aaKnown RBP15.64■□□□□ 0.09
COL6A3-209ENST00000472056 MAP3K11Q16584 847 aa15.64■□□□□ 0.09
COL6A3-209ENST00000472056 GIGYF2Q6Y7W6 1299 aaKnown RBP15.64■□□□□ 0.09
COL6A3-209ENST00000472056 ARHGAP29Q52LW3 1261 aa15.64■□□□□ 0.09
COL6A3-209ENST00000472056 KIF5CO60282 957 aa15.64■□□□□ 0.09
COL6A3-209ENST00000472056 GGT6Q6P531 493 aa15.64■□□□□ 0.09
COL6A3-209ENST00000472056 UBE2Q2Q8WVN8 375 aa15.64■□□□□ 0.09
COL6A3-209ENST00000472056 TIGD1Q96MW7 591 aa15.64■□□□□ 0.09
COL6A3-209ENST00000472056 FGFR1OPO95684 399 aaKnown RBP15.64■□□□□ 0.09
COL6A3-209ENST00000472056 TAOK3Q9H2K8 898 aa15.63■□□□□ 0.09
COL6A3-209ENST00000472056 CCDC30Q5VVM6 783 aa15.63■□□□□ 0.09
COL6A3-209ENST00000472056 VPS36Q86VN1 386 aa15.63■□□□□ 0.09
COL6A3-209ENST00000472056 NUP62CLQ9H1M0 184 aa15.63■□□□□ 0.09
COL6A3-209ENST00000472056 HFM1A2PYH4 1435 aa15.63■□□□□ 0.09
COL6A3-209ENST00000472056 EHBP1Q8NDI1 1231 aa15.63■□□□□ 0.09
COL6A3-209ENST00000472056 NAA15Q9BXJ9 866 aaKnown RBP15.63■□□□□ 0.09
COL6A3-209ENST00000472056 SCAND2PQ9GZW5 306 aaPredicted RBP15.63■□□□□ 0.09
COL6A3-209ENST00000472056 CCDC102AQ96A19 550 aa15.63■□□□□ 0.09
COL6A3-209ENST00000472056 CCDC183Q5T5S1 534 aa15.62■□□□□ 0.09
COL6A3-209ENST00000472056 SPECC1LQ69YQ0 1117 aa15.62■□□□□ 0.09
COL6A3-209ENST00000472056 SENP3Q9H4L4 574 aaPredicted RBP15.62■□□□□ 0.09
COL6A3-209ENST00000472056 TUBBP07437 444 aa15.62■□□□□ 0.09
COL6A3-209ENST00000472056 LRRC9Q6ZRR7 1453 aa15.62■□□□□ 0.09
COL6A3-209ENST00000472056 BRPF3Q9ULD4 1205 aa15.62■□□□□ 0.09
COL6A3-209ENST00000472056 PPP1R12BO60237 982 aaPredicted RBP15.62■□□□□ 0.09
COL6A3-209ENST00000472056 NOL7Q9UMY1 257 aaKnown RBP15.62■□□□□ 0.09
COL6A3-209ENST00000472056 ZSCAN25Q6NSZ9 544 aa15.61■□□□□ 0.09
COL6A3-209ENST00000472056 WDR63Q8IWG1 891 aa15.61■□□□□ 0.09
COL6A3-209ENST00000472056 BCL2L13Q9BXK5 485 aa15.61■□□□□ 0.09
COL6A3-209ENST00000472056 UPF3BQ9BZI7 483 aaKnown RBP15.61■□□□□ 0.09
COL6A3-209ENST00000472056 GNAI2P04899 355 aa15.61■□□□□ 0.09
COL6A3-209ENST00000472056 HMGB2P26583 209 aaKnown RBP15.61■□□□□ 0.09
COL6A3-209ENST00000472056 ME1P48163 572 aa15.61■□□□□ 0.09
COL6A3-209ENST00000472056 MAP2K1Q02750 393 aaPredicted RBP15.61■□□□□ 0.09
COL6A3-209ENST00000472056 SMC1AQ14683 1233 aaKnown RBP15.61■□□□□ 0.09
COL6A3-209ENST00000472056 FHOD3Q2V2M9 1422 aa15.61■□□□□ 0.09
COL6A3-209ENST00000472056 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.61■□□□□ 0.09
COL6A3-209ENST00000472056 PYM1Q9BRP8 204 aaKnown RBP15.6■□□□□ 0.09
COL6A3-209ENST00000472056 KIAA1328Q86T90 577 aa15.6■□□□□ 0.09
COL6A3-209ENST00000472056 BMP2KQ9NSY1 1161 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-209ENST00000472056 RRP7AQ9Y3A4 280 aaKnown RBP15.6■□□□□ 0.09
COL6A3-209ENST00000472056 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.6■□□□□ 0.09
COL6A3-209ENST00000472056 POTEJP0CG39 1038 aa15.6■□□□□ 0.09
COL6A3-209ENST00000472056 DNAAF4Q8WXU2 420 aa15.6■□□□□ 0.09
COL6A3-209ENST00000472056 BBXQ8WY36 941 aaPredicted RBP15.6■□□□□ 0.09
COL6A3-209ENST00000472056 SEPT11Q9NVA2 429 aaKnown RBP15.6■□□□□ 0.09
COL6A3-209ENST00000472056 FIBPO43427 364 aa15.6■□□□□ 0.09
COL6A3-209ENST00000472056 TAF4BQ92750 862 aa15.6■□□□□ 0.09
COL6A3-209ENST00000472056 CTNNA3Q9UI47 895 aa15.59■□□□□ 0.09
COL6A3-209ENST00000472056 HS1BP3Q53T59 392 aa15.59■□□□□ 0.09
COL6A3-209ENST00000472056 CECR2Q9BXF3 1484 aa15.59■□□□□ 0.09
COL6A3-209ENST00000472056 ANKRD18BA2A2Z9 1011 aa15.59■□□□□ 0.09
COL6A3-209ENST00000472056 CFAP57Q96MR6 1250 aa15.59■□□□□ 0.09
COL6A3-209ENST00000472056 PHAXQ9H814 394 aaKnown RBP15.59■□□□□ 0.09
COL6A3-209ENST00000472056 SPC24Q8NBT2 197 aa15.59■□□□□ 0.09
COL6A3-209ENST00000472056 NBPF1Q3BBV0 1214 aa15.58■□□□□ 0.09
COL6A3-209ENST00000472056 SPATA32Q96LK8 384 aa15.58■□□□□ 0.09
COL6A3-209ENST00000472056 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.58■□□□□ 0.09
COL6A3-209ENST00000472056 V9GYY5 206 aaPredicted RBP15.58■□□□□ 0.09
COL6A3-209ENST00000472056 DAPK1P53355 1430 aa15.58■□□□□ 0.09
COL6A3-209ENST00000472056 NACAP1Q9BZK3 213 aa15.58■□□□□ 0.08
COL6A3-209ENST00000472056 SH2B1Q9NRF2 756 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-209ENST00000472056 LRRFIP2Q9Y608 721 aaKnown RBP15.58■□□□□ 0.08
COL6A3-209ENST00000472056 HMGB1P1B2RPK0 211 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-209ENST00000472056 ANO10Q9NW15 660 aa15.58■□□□□ 0.08
COL6A3-209ENST00000472056 CASQ1P31415 396 aa15.58■□□□□ 0.08
COL6A3-209ENST00000472056 FSD1Q9BTV5 496 aa15.57■□□□□ 0.08
COL6A3-209ENST00000472056 GAS2L2Q8NHY3 880 aa15.57■□□□□ 0.08
COL6A3-209ENST00000472056 A6NNZ2 444 aa15.57■□□□□ 0.08
COL6A3-209ENST00000472056 TUBB8Q3ZCM7 444 aa15.57■□□□□ 0.08
COL6A3-209ENST00000472056 CCDC175P0C221 793 aa15.57■□□□□ 0.08
COL6A3-209ENST00000472056 CCDC57Q2TAC2 916 aa15.57■□□□□ 0.08
COL6A3-209ENST00000472056 GTPBP4Q9BZE4 634 aaKnown RBP15.57■□□□□ 0.08
COL6A3-209ENST00000472056 BMS1Q14692 1282 aaKnown RBP15.57■□□□□ 0.08
COL6A3-209ENST00000472056 UVSSAQ2YD98 709 aa15.56■□□□□ 0.08
COL6A3-209ENST00000472056 GNL3LQ9NVN8 582 aaKnown RBP15.56■□□□□ 0.08
COL6A3-209ENST00000472056 SPA17Q15506 151 aa15.56■□□□□ 0.08
COL6A3-209ENST00000472056 C6orf163Q5TEZ5 329 aa15.56■□□□□ 0.08
COL6A3-209ENST00000472056 LARP1BQ659C4 914 aaKnown RBP15.56■□□□□ 0.08
COL6A3-209ENST00000472056 PRKCSHP14314 528 aaPredicted RBP15.56■□□□□ 0.08
COL6A3-209ENST00000472056 RBM10P98175 930 aaKnown RBP15.56■□□□□ 0.08
COL6A3-209ENST00000472056 CENPHQ9H3R5 247 aa15.56■□□□□ 0.08
COL6A3-209ENST00000472056 SRRTQ9BXP5 876 aaKnown RBP15.56■□□□□ 0.08
COL6A3-209ENST00000472056 TSPYL4Q9UJ04 414 aa15.56■□□□□ 0.08
COL6A3-209ENST00000472056 CCDC171Q6TFL3 1326 aa15.55■□□□□ 0.08
COL6A3-209ENST00000472056 HMGB1P09429 215 aaKnown RBP15.55■□□□□ 0.08
COL6A3-209ENST00000472056 ANKS4BQ8N8V4 417 aa15.54■□□□□ 0.08
COL6A3-209ENST00000472056 CASKIN1Q8WXD9 1431 aa15.54■□□□□ 0.08
COL6A3-209ENST00000472056 NKTRP30414 1462 aaKnown RBP15.54■□□□□ 0.08
COL6A3-209ENST00000472056 ANKRD62A6NC57 917 aa15.54■□□□□ 0.08
COL6A3-209ENST00000472056 KRT222Q8N1A0 295 aa15.54■□□□□ 0.08
COL6A3-209ENST00000472056 USO1O60763 962 aaKnown RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms