RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 BCORL1Q5H9F3 1711 aa6.96□□□□□ -1.3
SF3B1-208ENST00000470268 VWDEQ8N2E2 1590 aa6.96□□□□□ -1.3
SF3B1-208ENST00000470268 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.96□□□□□ -1.3
SF3B1-208ENST00000470268 FAM198AQ9UFP1 575 aa6.96□□□□□ -1.3
SF3B1-208ENST00000470268 RNF17Q9BXT8 1623 aaKnown RBP6.96□□□□□ -1.3
SF3B1-208ENST00000470268 FAM135AQ9P2D6 1515 aa6.95□□□□□ -1.3
SF3B1-208ENST00000470268 ARID4BQ4LE39 1312 aaPredicted RBP6.95□□□□□ -1.3
SF3B1-208ENST00000470268 GGCXP38435 758 aa6.94□□□□□ -1.3
SF3B1-208ENST00000470268 PDE4DQ08499 809 aa6.94□□□□□ -1.3
SF3B1-208ENST00000470268 PPP1R18Q6NYC8 613 aa6.94□□□□□ -1.3
SF3B1-208ENST00000470268 DAXXQ9UER7 740 aaPredicted RBP6.94□□□□□ -1.3
SF3B1-208ENST00000470268 SLC4A3P48751 1232 aa6.94□□□□□ -1.3
SF3B1-208ENST00000470268 CCDC102AQ96A19 550 aa6.94□□□□□ -1.3
SF3B1-208ENST00000470268 GTF3C3Q9Y5Q9 886 aa6.94□□□□□ -1.3
SF3B1-208ENST00000470268 WASHC2CQ9Y4E1 1318 aa6.94□□□□□ -1.3
SF3B1-208ENST00000470268 IQGAP3Q86VI3 1631 aa6.94□□□□□ -1.3
SF3B1-208ENST00000470268 ABCC3O15438 1527 aa6.93□□□□□ -1.3
SF3B1-208ENST00000470268 SLF2Q8IX21 1173 aa6.93□□□□□ -1.3
SF3B1-208ENST00000470268 NPDC1Q9NQX5 325 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-208ENST00000470268 NUDT18Q6ZVK8 323 aa6.93□□□□□ -1.3
SF3B1-208ENST00000470268 CCER1Q8TC90 406 aaPredicted RBP6.93□□□□□ -1.3
SF3B1-208ENST00000470268 ACIN1Q9UKV3 1341 aaKnown RBP6.93□□□□□ -1.3
SF3B1-208ENST00000470268 KANK1Q14678 1352 aa6.92□□□□□ -1.3
SF3B1-208ENST00000470268 LMTK2Q8IWU2 1503 aa6.92□□□□□ -1.3
SF3B1-208ENST00000470268 FECHP22830 423 aa6.92□□□□□ -1.3
SF3B1-208ENST00000470268 AMHR2Q16671 573 aa6.92□□□□□ -1.3
SF3B1-208ENST00000470268 NPATQ14207 1427 aa6.92□□□□□ -1.3
SF3B1-208ENST00000470268 TTC13Q8NBP0 860 aa6.91□□□□□ -1.3
SF3B1-208ENST00000470268 TMUB1Q9BVT8 246 aa6.91□□□□□ -1.3
SF3B1-208ENST00000470268 PRR14Q9BWN1 585 aa6.91□□□□□ -1.3
SF3B1-208ENST00000470268 KDM4CQ9H3R0 1056 aa6.91□□□□□ -1.3
SF3B1-208ENST00000470268 CDHR5Q9HBB8 845 aa6.91□□□□□ -1.3
SF3B1-208ENST00000470268 GPBP1L1Q9HC44 474 aaPredicted RBP6.91□□□□□ -1.3
SF3B1-208ENST00000470268 PLA2R1Q13018 1463 aa6.91□□□□□ -1.3
SF3B1-208ENST00000470268 SIN3AQ96ST3 1273 aa6.91□□□□□ -1.3
SF3B1-208ENST00000470268 ANKRD30BQ9BXX2 1392 aa6.91□□□□□ -1.3
SF3B1-208ENST00000470268 EFCAB6Q5THR3 1501 aa6.91□□□□□ -1.3
SF3B1-208ENST00000470268 CEP152O94986 1710 aa6.9□□□□□ -1.3
SF3B1-208ENST00000470268 RNF40O75150 1001 aa6.9□□□□□ -1.3
SF3B1-208ENST00000470268 APLP1P51693 650 aa6.9□□□□□ -1.3
SF3B1-208ENST00000470268 E9PCH4 1651 aa6.9□□□□□ -1.31
SF3B1-208ENST00000470268 TET3O43151 1660 aa6.9□□□□□ -1.31
SF3B1-208ENST00000470268 ZMYM3Q14202 1370 aa6.9□□□□□ -1.31
SF3B1-208ENST00000470268 C3orf80F5H4A9 247 aa6.89□□□□□ -1.31
SF3B1-208ENST00000470268 FBXO31Q5XUX0 539 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-208ENST00000470268 ZNF516Q92618 1163 aa6.89□□□□□ -1.31
SF3B1-208ENST00000470268 ARHGAP31Q2M1Z3 1444 aa6.89□□□□□ -1.31
SF3B1-208ENST00000470268 CEBPAP49715 358 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-208ENST00000470268 CAMSAP1Q5T5Y3 1602 aa6.89□□□□□ -1.31
SF3B1-208ENST00000470268 PTPRTO14522 1441 aa6.88□□□□□ -1.31
SF3B1-208ENST00000470268 CLTCQ00610 1675 aaKnown RBP6.88□□□□□ -1.31
SF3B1-208ENST00000470268 ZC3H13Q5T200 1668 aaKnown RBP6.88□□□□□ -1.31
SF3B1-208ENST00000470268 LCE2BO14633 110 aa6.88□□□□□ -1.31
SF3B1-208ENST00000470268 MADDQ8WXG6 1647 aa6.88□□□□□ -1.31
SF3B1-208ENST00000470268 CLSPNQ9HAW4 1339 aa6.88□□□□□ -1.31
SF3B1-208ENST00000470268 SWT1Q5T5J6 900 aaKnown RBP6.88□□□□□ -1.31
SF3B1-208ENST00000470268 ESF1Q9H501 851 aaKnown RBP6.88□□□□□ -1.31
SF3B1-208ENST00000470268 RPRD2Q5VT52 1461 aaKnown RBP6.87□□□□□ -1.31
SF3B1-208ENST00000470268 NOS1P29475 1434 aa6.87□□□□□ -1.31
SF3B1-208ENST00000470268 CNTLNQ9NXG0 1405 aa6.87□□□□□ -1.31
SF3B1-208ENST00000470268 ADAMTSL3P82987 1691 aa6.87□□□□□ -1.31
SF3B1-208ENST00000470268 UGGT1Q9NYU2 1555 aa6.87□□□□□ -1.31
SF3B1-208ENST00000470268 NEUROD1Q13562 356 aa6.87□□□□□ -1.31
SF3B1-208ENST00000470268 ERICH6Q7L0X2 663 aa6.87□□□□□ -1.31
SF3B1-208ENST00000470268 PDZRN3Q9UPQ7 1066 aa6.87□□□□□ -1.31
SF3B1-208ENST00000470268 PADI6Q6TGC4 694 aa6.86□□□□□ -1.31
SF3B1-208ENST00000470268 PARP9Q8IXQ6 854 aa6.86□□□□□ -1.31
SF3B1-208ENST00000470268 ERVK-7P63135 1459 aa6.86□□□□□ -1.31
SF3B1-208ENST00000470268 SYNMO15061 1565 aa6.86□□□□□ -1.31
SF3B1-208ENST00000470268 TRPM2O94759 1503 aa6.85□□□□□ -1.31
SF3B1-208ENST00000470268 ZPR1O75312 459 aa6.85□□□□□ -1.31
SF3B1-208ENST00000470268 IDI1Q13907 227 aa6.85□□□□□ -1.31
SF3B1-208ENST00000470268 SPATA31D1Q6ZQQ2 1576 aa6.85□□□□□ -1.31
SF3B1-208ENST00000470268 FER1L4A9Z1Z3 1794 aa6.85□□□□□ -1.31
SF3B1-208ENST00000470268 CCDC144AA2RUR9 1427 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 NKX2-3Q8TAU0 364 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 EYA1Q99502 592 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 PTPRMP28827 1452 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 MROH2AA6NES4 1674 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 RIMS1Q86UR5 1692 aaKnown RBP6.84□□□□□ -1.31
SF3B1-208ENST00000470268 PREX1Q8TCU6 1659 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 COPS2P61201 443 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 ZNF787Q6DD87 383 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 IL27Q8NEV9 243 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 DDRGK1Q96HY6 314 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 CLTCL1P53675 1640 aa6.84□□□□□ -1.31
SF3B1-208ENST00000470268 SPHKAPQ2M3C7 1700 aa6.84□□□□□ -1.32
SF3B1-208ENST00000470268 C3P01024 1663 aa6.83□□□□□ -1.32
SF3B1-208ENST00000470268 OATP04181 439 aa6.83□□□□□ -1.32
SF3B1-208ENST00000470268 TTLL12Q14166 644 aaPredicted RBP6.83□□□□□ -1.32
SF3B1-208ENST00000470268 SPATA31E1Q6ZUB1 1445 aa6.83□□□□□ -1.32
SF3B1-208ENST00000470268 FAM117AQ9C073 453 aa6.83□□□□□ -1.32
SF3B1-208ENST00000470268 PCDHB3Q9Y5E6 796 aa6.83□□□□□ -1.32
SF3B1-208ENST00000470268 TNRQ92752 1358 aa6.83□□□□□ -1.32
SF3B1-208ENST00000470268 PIK3C2BO00750 1634 aa6.82□□□□□ -1.32
SF3B1-208ENST00000470268 RGL3Q3MIN7 710 aa6.82□□□□□ -1.32
SF3B1-208ENST00000470268 L3MBTL2Q969R5 705 aa6.82□□□□□ -1.32
SF3B1-208ENST00000470268 SLC52A1Q9NWF4 448 aa6.82□□□□□ -1.32
SF3B1-208ENST00000470268 CFAP65Q6ZU64 1925 aaKnown RBP6.81□□□□□ -1.32
SF3B1-208ENST00000470268 CLCN1P35523 988 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms