RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HDGFP51858 240 aaKnown RBP24.25■■□□□ 1.47
VIM-203ENST00000469543 KRT24Q2M2I5 525 aa24.24■■□□□ 1.47
VIM-203ENST00000469543 HSP90AB2PQ58FF8 381 aa24.24■■□□□ 1.47
VIM-203ENST00000469543 SULT6B1Q6IMI4 303 aa24.23■■□□□ 1.47
VIM-203ENST00000469543 IPO8O15397 1037 aaKnown RBP24.22■■□□□ 1.47
VIM-203ENST00000469543 KIF16BQ96L93 1317 aa24.22■■□□□ 1.47
VIM-203ENST00000469543 ADAMTS13Q76LX8 1427 aa24.21■■□□□ 1.47
VIM-203ENST00000469543 HDAC1Q13547 482 aaPredicted RBP24.21■■□□□ 1.47
VIM-203ENST00000469543 FRAT2O75474 233 aaPredicted RBP24.21■■□□□ 1.47
VIM-203ENST00000469543 EIF4A2Q14240 407 aaKnown RBP24.21■■□□□ 1.47
VIM-203ENST00000469543 LNPKQ9C0E8 428 aa24.21■■□□□ 1.47
VIM-203ENST00000469543 ALDH1L2Q3SY69 923 aa24.2■■□□□ 1.47
VIM-203ENST00000469543 MRPL50Q8N5N7 158 aaKnown RBP24.2■■□□□ 1.46
VIM-203ENST00000469543 SLKQ9H2G2 1235 aaPredicted RBP24.2■■□□□ 1.46
VIM-203ENST00000469543 TTC21BQ7Z4L5 1316 aa24.2■■□□□ 1.46
VIM-203ENST00000469543 TWISTNBQ3B726 338 aaPredicted RBP24.19■■□□□ 1.46
VIM-203ENST00000469543 ZNF692Q9BU19 519 aaPredicted RBP24.19■■□□□ 1.46
VIM-203ENST00000469543 ZNF853P0CG23 659 aa24.19■■□□□ 1.46
VIM-203ENST00000469543 MCM10Q7L590 875 aa24.18■■□□□ 1.46
VIM-203ENST00000469543 GNAI1P63096 354 aa24.18■■□□□ 1.46
VIM-203ENST00000469543 CDC42BPGQ6DT37 1551 aa24.18■■□□□ 1.46
VIM-203ENST00000469543 AATKQ6ZMQ8 1374 aa24.18■■□□□ 1.46
VIM-203ENST00000469543 ZBTB7BO15156 539 aaPredicted RBP24.18■■□□□ 1.46
VIM-203ENST00000469543 SPRYD3Q8NCJ5 442 aa24.18■■□□□ 1.46
VIM-203ENST00000469543 USP35Q9P2H5 1018 aa24.18■■□□□ 1.46
VIM-203ENST00000469543 SMC5Q8IY18 1101 aa24.17■■□□□ 1.46
VIM-203ENST00000469543 IFT57Q9NWB7 429 aa24.17■■□□□ 1.46
VIM-203ENST00000469543 SIRT1Q96EB6 747 aa24.17■■□□□ 1.46
VIM-203ENST00000469543 CFAP44Q96MT7 982 aa24.17■■□□□ 1.46
VIM-203ENST00000469543 AMOTL2Q9Y2J4 779 aa24.17■■□□□ 1.46
VIM-203ENST00000469543 MFAP1P55081 439 aaKnown RBP24.16■■□□□ 1.46
VIM-203ENST00000469543 TECPR2O15040 1411 aa24.16■■□□□ 1.46
VIM-203ENST00000469543 CDK12Q9NYV4 1490 aaPredicted RBP24.16■■□□□ 1.46
VIM-203ENST00000469543 MIS18AQ9NYP9 233 aa24.16■■□□□ 1.46
VIM-203ENST00000469543 TBC1D32Q96NH3 1257 aa24.15■■□□□ 1.46
VIM-203ENST00000469543 PTPRUQ92729 1446 aa24.15■■□□□ 1.46
VIM-203ENST00000469543 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.14■■□□□ 1.46
VIM-203ENST00000469543 VIRMAQ69YN4 1812 aaKnown RBP24.14■■□□□ 1.45
VIM-203ENST00000469543 UBR1Q8IWV7 1749 aa24.13■■□□□ 1.45
VIM-203ENST00000469543 FOXO3O43524 673 aa24.13■■□□□ 1.45
VIM-203ENST00000469543 NUTM2GQ5VZR2 741 aa24.12■■□□□ 1.45
VIM-203ENST00000469543 SIRT2Q8IXJ6 389 aa24.12■■□□□ 1.45
VIM-203ENST00000469543 UPF2Q9HAU5 1272 aaKnown RBP24.12■■□□□ 1.45
VIM-203ENST00000469543 DLG5Q8TDM6 1919 aa24.11■■□□□ 1.45
VIM-203ENST00000469543 ANKRD45Q5TZF3 282 aa24.1■■□□□ 1.45
VIM-203ENST00000469543 CALD1Q05682 793 aaKnown RBP24.1■■□□□ 1.45
VIM-203ENST00000469543 RBM33Q96EV2 1170 aaKnown RBP24.1■■□□□ 1.45
VIM-203ENST00000469543 TBC1D2Q9BYX2 928 aa24.1■■□□□ 1.45
VIM-203ENST00000469543 NUCB1Q02818 461 aa24.09■■□□□ 1.45
VIM-203ENST00000469543 MON2Q7Z3U7 1717 aa24.09■■□□□ 1.45
VIM-203ENST00000469543 PLEKHG3A1L390 1219 aa24.08■■□□□ 1.45
VIM-203ENST00000469543 EID1Q9Y6B2 187 aa24.08■■□□□ 1.45
VIM-203ENST00000469543 C3P01024 1663 aa24.08■■□□□ 1.45
VIM-203ENST00000469543 BRPF1P55201 1214 aaPredicted RBP24.08■■□□□ 1.45
VIM-203ENST00000469543 CHD1LQ86WJ1 897 aa24.08■■□□□ 1.45
VIM-203ENST00000469543 NGDNQ8NEJ9 315 aaKnown RBP24.07■■□□□ 1.44
VIM-203ENST00000469543 PLEKHG1Q9ULL1 1385 aa24.06■■□□□ 1.44
VIM-203ENST00000469543 C22orf23Q9BZE7 217 aa24.06■■□□□ 1.44
VIM-203ENST00000469543 USP6P35125 1406 aa24.06■■□□□ 1.44
VIM-203ENST00000469543 ZNF428Q96B54 188 aa24.06■■□□□ 1.44
VIM-203ENST00000469543 MAP3K19Q56UN5 1328 aa24.05■■□□□ 1.44
VIM-203ENST00000469543 LMOD3Q0VAK6 560 aa24.04■■□□□ 1.44
VIM-203ENST00000469543 ARHGAP45Q92619 1136 aa24.04■■□□□ 1.44
VIM-203ENST00000469543 AKAP12Q02952 1782 aa24.04■■□□□ 1.44
VIM-203ENST00000469543 BECN1Q14457 450 aa24.04■■□□□ 1.44
VIM-203ENST00000469543 ITSN1Q15811 1721 aa24.03■■□□□ 1.44
VIM-203ENST00000469543 KNDC1Q76NI1 1749 aa24.03■■□□□ 1.44
VIM-203ENST00000469543 ABCC4O15439 1325 aa24.03■■□□□ 1.44
VIM-203ENST00000469543 GSE1Q14687 1217 aa24.02■■□□□ 1.44
VIM-203ENST00000469543 OVOS2A0A0J9YW53 1432 aa24.02■■□□□ 1.44
VIM-203ENST00000469543 OVOS2Q6IE36 1432 aa24.02■■□□□ 1.44
VIM-203ENST00000469543 MTHFSDQ2M296 383 aaKnown RBP24.01■■□□□ 1.43
VIM-203ENST00000469543 CHL1O00533 1208 aa24■■□□□ 1.43
VIM-203ENST00000469543 PTCH1Q13635 1447 aa24■■□□□ 1.43
VIM-203ENST00000469543 ANTXR1Q9H6X2 564 aa23.99■■□□□ 1.43
VIM-203ENST00000469543 PEAK1Q9H792 1746 aa23.99■■□□□ 1.43
VIM-203ENST00000469543 KCNA6P17658 529 aa23.99■■□□□ 1.43
VIM-203ENST00000469543 NLRP6P59044 892 aa23.97■■□□□ 1.43
VIM-203ENST00000469543 APBB1O00213 710 aa23.97■■□□□ 1.43
VIM-203ENST00000469543 AMPHP49418 695 aa23.97■■□□□ 1.43
VIM-203ENST00000469543 C16orf71Q8IYS4 520 aaPredicted RBP23.97■■□□□ 1.43
VIM-203ENST00000469543 EYA1Q99502 592 aa23.97■■□□□ 1.43
VIM-203ENST00000469543 IL27Q8NEV9 243 aa23.97■■□□□ 1.43
VIM-203ENST00000469543 LTV1Q96GA3 475 aaPredicted RBP23.97■■□□□ 1.43
VIM-203ENST00000469543 PIK3R4Q99570 1358 aa23.96■■□□□ 1.43
VIM-203ENST00000469543 PLEKHG5O94827 1062 aa23.96■■□□□ 1.43
VIM-203ENST00000469543 RGPD8O14715 1765 aaPredicted RBP23.96■■□□□ 1.43
VIM-203ENST00000469543 SLC4A2P04920 1241 aa23.96■■□□□ 1.43
VIM-203ENST00000469543 TBX22Q9Y458 520 aa23.96■■□□□ 1.43
VIM-203ENST00000469543 API5Q9BZZ5 524 aaKnown RBP23.95■■□□□ 1.42
VIM-203ENST00000469543 SSH2Q76I76 1423 aa23.95■■□□□ 1.42
VIM-203ENST00000469543 G2E3Q7L622 706 aa23.94■■□□□ 1.42
VIM-203ENST00000469543 F6X3S4 739 aa23.94■■□□□ 1.42
VIM-203ENST00000469543 NECTIN2Q92692 538 aa23.94■■□□□ 1.42
VIM-203ENST00000469543 GCC1Q96CN9 775 aa23.93■■□□□ 1.42
VIM-203ENST00000469543 USP31Q70CQ4 1352 aa23.93■■□□□ 1.42
VIM-203ENST00000469543 C14orf37Q86TY3 774 aa23.93■■□□□ 1.42
VIM-203ENST00000469543 THEMISQ8N1K5 641 aaPredicted RBP23.93■■□□□ 1.42
VIM-203ENST00000469543 NRKQ7Z2Y5 1582 aa23.93■■□□□ 1.42
VIM-203ENST00000469543 RIMS1Q86UR5 1692 aaKnown RBP23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms