RNA–Protein interactions for RNA: ENST00000467329.5

PRPF3-202, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 5

Gene PRPF3, Length 2,595 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-202ENST00000467329 SALL2Q9Y467 1007 aaPredicted RBP12.41□□□□□ -0.42
PRPF3-202ENST00000467329 FOXO3O43524 673 aa12.4□□□□□ -0.42
PRPF3-202ENST00000467329 SUPT16HQ9Y5B9 1047 aaKnown RBP12.4□□□□□ -0.42
PRPF3-202ENST00000467329 ABCC6O95255 1503 aa12.4□□□□□ -0.42
PRPF3-202ENST00000467329 NEFMP07197 916 aa12.4□□□□□ -0.42
PRPF3-202ENST00000467329 TNS3Q68CZ2 1445 aa12.4□□□□□ -0.43
PRPF3-202ENST00000467329 DUSP27Q5VZP5 1158 aa12.39□□□□□ -0.43
PRPF3-202ENST00000467329 CDCA7LQ96GN5 454 aa12.39□□□□□ -0.43
PRPF3-202ENST00000467329 TMPOP42166 694 aaKnown RBP12.39□□□□□ -0.43
PRPF3-202ENST00000467329 AMPHP49418 695 aa12.39□□□□□ -0.43
PRPF3-202ENST00000467329 IL16Q14005 1332 aa12.39□□□□□ -0.43
PRPF3-202ENST00000467329 PRKAR2BP31323 418 aa12.38□□□□□ -0.43
PRPF3-202ENST00000467329 LTBP4Q8N2S1 1624 aa12.38□□□□□ -0.43
PRPF3-202ENST00000467329 CRYBG1Q9Y4K1 1723 aa12.38□□□□□ -0.43
PRPF3-202ENST00000467329 SENP3-EIF4A1A0A087X0R7 540 aa12.38□□□□□ -0.43
PRPF3-202ENST00000467329 HOXC9P31274 260 aa12.38□□□□□ -0.43
PRPF3-202ENST00000467329 KDRP35968 1356 aa12.38□□□□□ -0.43
PRPF3-202ENST00000467329 NHSL1Q5SYE7 1610 aa12.38□□□□□ -0.43
PRPF3-202ENST00000467329 RCAN3Q9UKA8 241 aa12.37□□□□□ -0.43
PRPF3-202ENST00000467329 IGSF1Q8N6C5 1336 aa12.37□□□□□ -0.43
PRPF3-202ENST00000467329 NFE2L2Q16236 605 aa12.37□□□□□ -0.43
PRPF3-202ENST00000467329 HSP90AB2PQ58FF8 381 aa12.37□□□□□ -0.43
PRPF3-202ENST00000467329 IP6K1Q92551 441 aa12.37□□□□□ -0.43
PRPF3-202ENST00000467329 NUTM2GQ5VZR2 741 aa12.36□□□□□ -0.43
PRPF3-202ENST00000467329 BRINP3Q76B58 766 aa12.36□□□□□ -0.43
PRPF3-202ENST00000467329 SLAIN2Q9P270 581 aa12.36□□□□□ -0.43
PRPF3-202ENST00000467329 SPATA31A3Q5VYP0 1347 aa12.35□□□□□ -0.43
PRPF3-202ENST00000467329 LMOD3Q0VAK6 560 aa12.35□□□□□ -0.43
PRPF3-202ENST00000467329 FKBP8Q14318 412 aa12.35□□□□□ -0.43
PRPF3-202ENST00000467329 CAMTA1Q9Y6Y1 1673 aa12.35□□□□□ -0.43
PRPF3-202ENST00000467329 MYH16Q9H6N6 1097 aa12.35□□□□□ -0.43
PRPF3-202ENST00000467329 TRIM35Q9UPQ4 493 aa12.35□□□□□ -0.43
PRPF3-202ENST00000467329 RRP7AQ9Y3A4 280 aaKnown RBP12.35□□□□□ -0.43
PRPF3-202ENST00000467329 SOS2Q07890 1332 aaPredicted RBP12.35□□□□□ -0.43
PRPF3-202ENST00000467329 GCP02774 474 aa12.34□□□□□ -0.43
PRPF3-202ENST00000467329 CALD1Q05682 793 aaKnown RBP12.34□□□□□ -0.43
PRPF3-202ENST00000467329 ARHGEF25Q86VW2 580 aa12.34□□□□□ -0.43
PRPF3-202ENST00000467329 SOX12O15370 315 aa12.34□□□□□ -0.43
PRPF3-202ENST00000467329 HMOX1P09601 288 aa12.34□□□□□ -0.43
PRPF3-202ENST00000467329 NCAPD2Q15021 1401 aa12.34□□□□□ -0.43
PRPF3-202ENST00000467329 RIPK4P57078 832 aa12.33□□□□□ -0.43
PRPF3-202ENST00000467329 XPCQ01831 940 aaPredicted RBP12.33□□□□□ -0.43
PRPF3-202ENST00000467329 RRP1P56182 461 aaKnown RBP12.32□□□□□ -0.44
PRPF3-202ENST00000467329 SULT6B1Q6IMI4 303 aa12.32□□□□□ -0.44
PRPF3-202ENST00000467329 SPINK5Q9NQ38 1064 aaPredicted RBP12.32□□□□□ -0.44
PRPF3-202ENST00000467329 CT47B1P0C2W7 299 aaPredicted RBP12.32□□□□□ -0.44
PRPF3-202ENST00000467329 NEUROD2Q15784 382 aa12.32□□□□□ -0.44
PRPF3-202ENST00000467329 CPDO75976 1380 aa12.32□□□□□ -0.44
PRPF3-202ENST00000467329 DLG5Q8TDM6 1919 aa12.31□□□□□ -0.44
PRPF3-202ENST00000467329 PHACTR3Q96KR7 559 aa12.31□□□□□ -0.44
PRPF3-202ENST00000467329 EYA1Q99502 592 aa12.31□□□□□ -0.44
PRPF3-202ENST00000467329 FAM208AQ9UK61 1670 aaKnown RBP12.31□□□□□ -0.44
PRPF3-202ENST00000467329 AHDC1Q5TGY3 1603 aaPredicted RBP12.31□□□□□ -0.44
PRPF3-202ENST00000467329 COL18A1P39060 1754 aa12.31□□□□□ -0.44
PRPF3-202ENST00000467329 LMO7Q8WWI1 1683 aa12.31□□□□□ -0.44
PRPF3-202ENST00000467329 PLEKHG2Q9H7P9 1386 aa12.3□□□□□ -0.44
PRPF3-202ENST00000467329 AEBP1Q8IUX7 1158 aa12.3□□□□□ -0.44
PRPF3-202ENST00000467329 ABCA3Q99758 1704 aa12.3□□□□□ -0.44
PRPF3-202ENST00000467329 LMOD2Q6P5Q4 547 aa12.29□□□□□ -0.44
PRPF3-202ENST00000467329 HTATSF1O43719 755 aaKnown RBP12.28□□□□□ -0.44
PRPF3-202ENST00000467329 GAS2L2Q8NHY3 880 aa12.28□□□□□ -0.44
PRPF3-202ENST00000467329 DDX17Q92841 729 aaKnown RBP12.28□□□□□ -0.44
PRPF3-202ENST00000467329 IFT57Q9NWB7 429 aa12.28□□□□□ -0.44
PRPF3-202ENST00000467329 LRRC37A3O60309 1634 aa12.28□□□□□ -0.44
PRPF3-202ENST00000467329 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.27□□□□□ -0.44
PRPF3-202ENST00000467329 FANCIQ9NVI1 1328 aa12.27□□□□□ -0.44
PRPF3-202ENST00000467329 ROBO1Q9Y6N7 1651 aa12.27□□□□□ -0.44
PRPF3-202ENST00000467329 GNAI1P63096 354 aa12.26□□□□□ -0.45
PRPF3-202ENST00000467329 COL22A1Q8NFW1 1626 aaPredicted RBP12.26□□□□□ -0.45
PRPF3-202ENST00000467329 ZNF853P0CG23 659 aa12.26□□□□□ -0.45
PRPF3-202ENST00000467329 PPP4R2Q9NY27 417 aa12.26□□□□□ -0.45
PRPF3-202ENST00000467329 ANKRD24Q8TF21 1146 aa12.25□□□□□ -0.45
PRPF3-202ENST00000467329 RGPD2P0DJD1 1756 aa12.25□□□□□ -0.45
PRPF3-202ENST00000467329 ZNF428Q96B54 188 aa12.25□□□□□ -0.45
PRPF3-202ENST00000467329 RGPD5Q99666 1765 aa12.24□□□□□ -0.45
PRPF3-202ENST00000467329 ERBB3P21860 1342 aa12.24□□□□□ -0.45
PRPF3-202ENST00000467329 NBPF6Q5VWK0 638 aa12.24□□□□□ -0.45
PRPF3-202ENST00000467329 LTV1Q96GA3 475 aaPredicted RBP12.24□□□□□ -0.45
PRPF3-202ENST00000467329 NBPF4Q96M43 638 aa12.24□□□□□ -0.45
PRPF3-202ENST00000467329 CFAP44Q96MT7 982 aa12.24□□□□□ -0.45
PRPF3-202ENST00000467329 CRB1P82279 1406 aa12.23□□□□□ -0.45
PRPF3-202ENST00000467329 IRX6P78412 446 aaPredicted RBP12.23□□□□□ -0.45
PRPF3-202ENST00000467329 MTHFSDQ2M296 383 aaKnown RBP12.23□□□□□ -0.45
PRPF3-202ENST00000467329 OVOS2A0A0G2JMS6 1433 aa12.23□□□□□ -0.45
PRPF3-202ENST00000467329 MAP3K5Q99683 1374 aa12.23□□□□□ -0.45
PRPF3-202ENST00000467329 RARSP54136 660 aaKnown RBP12.23□□□□□ -0.45
PRPF3-202ENST00000467329 KIAA0232Q92628 1395 aa12.22□□□□□ -0.45
PRPF3-202ENST00000467329 ZBTB7CA1YPR0 619 aa12.22□□□□□ -0.45
PRPF3-202ENST00000467329 ZC3H6P61129 1189 aaKnown RBP12.22□□□□□ -0.45
PRPF3-202ENST00000467329 AMOTQ4VCS5 1084 aa12.22□□□□□ -0.45
PRPF3-202ENST00000467329 AXIN2Q9Y2T1 843 aa12.22□□□□□ -0.45
PRPF3-202ENST00000467329 EXOSC9Q06265 439 aaKnown RBP12.21□□□□□ -0.45
PRPF3-202ENST00000467329 TSR2Q969E8 191 aaKnown RBP12.21□□□□□ -0.45
PRPF3-202ENST00000467329 BABAM1Q9NWV8 329 aa12.21□□□□□ -0.45
PRPF3-202ENST00000467329 RTF1Q92541 710 aaKnown RBP12.21□□□□□ -0.46
PRPF3-202ENST00000467329 GNAT3A8MTJ3 354 aa12.2□□□□□ -0.46
PRPF3-202ENST00000467329 PLEKHO1Q53GL0 409 aaPredicted RBP12.2□□□□□ -0.46
PRPF3-202ENST00000467329 LRRC59Q96AG4 307 aaKnown RBP12.2□□□□□ -0.46
PRPF3-202ENST00000467329 COL16A1Q07092 1604 aaPredicted RBP12.2□□□□□ -0.46
PRPF3-202ENST00000467329 CHL1O00533 1208 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms