RNA–Protein interactions for RNA: ENST00000465627.5

UBA3-208, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 2

Gene UBA3, Length 1,388 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-208	ENST00000465627	CPSF1	Q10570	1443 aa	Known RBP	12.09	□□□□□ -0.47
UBA3-208	ENST00000465627	AKAP12	Q02952	1782 aa		12.08	□□□□□ -0.48
UBA3-208	ENST00000465627	MON2	Q7Z3U7	1717 aa		12.08	□□□□□ -0.48
UBA3-208	ENST00000465627		A0A1W2PP64	1363 aa		12.07	□□□□□ -0.48
UBA3-208	ENST00000465627	ADGRL3	Q9HAR2	1447 aa		12.07	□□□□□ -0.48
UBA3-208	ENST00000465627	RGPD1	P0DJD0	1748 aa		12.07	□□□□□ -0.48
UBA3-208	ENST00000465627	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	12.07	□□□□□ -0.48
UBA3-208	ENST00000465627	PRELP	P51888	382 aa		12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	SRPK2	P78362	688 aa	Known RBP	12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	COL13A1	Q5TAT6	717 aa	Predicted RBP	12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	SEPT12	Q8IYM1	358 aa		12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	NCOA3	Q9Y6Q9	1424 aa		12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	RGPD8	O14715	1765 aa	Predicted RBP	12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	ITSN1	Q15811	1721 aa		12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	TNS1	Q9HBL0	1735 aa	Known RBP	12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	NRK	Q7Z2Y5	1582 aa		12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	ANKAR	Q7Z5J8	1434 aa		12.06	□□□□□ -0.48
UBA3-208	ENST00000465627	EZH2	Q15910	746 aa	Known RBP	12.05	□□□□□ -0.48
UBA3-208	ENST00000465627	PPIP5K1	Q6PFW1	1433 aa		12.05	□□□□□ -0.48
UBA3-208	ENST00000465627	NSD3	Q9BZ95	1437 aa		12.05	□□□□□ -0.48
UBA3-208	ENST00000465627	RALBP1	Q15311	655 aa		12.05	□□□□□ -0.48
UBA3-208	ENST00000465627	CCDC184	Q52MB2	194 aa		12.05	□□□□□ -0.48
UBA3-208	ENST00000465627	NUDT16	Q96DE0	195 aa	Known RBP	12.05	□□□□□ -0.48
UBA3-208	ENST00000465627	ANKRD26	Q9UPS8	1709 aa		12.04	□□□□□ -0.48
UBA3-208	ENST00000465627	MST1R	Q04912	1400 aa		12.04	□□□□□ -0.48
UBA3-208	ENST00000465627	PLEKHG3	A1L390	1219 aa		12.04	□□□□□ -0.48
UBA3-208	ENST00000465627	CABP1	Q9NZU7	370 aa		12.04	□□□□□ -0.48
UBA3-208	ENST00000465627	CCDC61	Q9Y6R9	512 aa		12.04	□□□□□ -0.48
UBA3-208	ENST00000465627	KRT27	Q7Z3Y8	459 aa		12.03	□□□□□ -0.48
UBA3-208	ENST00000465627	SPON1	Q9HCB6	807 aa		12.03	□□□□□ -0.48
UBA3-208	ENST00000465627	KNSTRN	Q9Y448	316 aa		12.03	□□□□□ -0.48
UBA3-208	ENST00000465627	SSH2	Q76I76	1423 aa		12.02	□□□□□ -0.48
UBA3-208	ENST00000465627	TMC1	Q8TDI8	760 aa		12.02	□□□□□ -0.49
UBA3-208	ENST00000465627	KIF20B	Q96Q89	1820 aa		12.02	□□□□□ -0.49
UBA3-208	ENST00000465627	POLR3A	O14802	1390 aa	Predicted RBP	12.01	□□□□□ -0.49
UBA3-208	ENST00000465627	NSD2	O96028	1365 aa		12.01	□□□□□ -0.49
UBA3-208	ENST00000465627	COL22A1	Q8NFW1	1626 aa	Predicted RBP	12.01	□□□□□ -0.49
UBA3-208	ENST00000465627	MYBBP1A	Q9BQG0	1328 aa	Known RBP	12.01	□□□□□ -0.49
UBA3-208	ENST00000465627	KCNQ2	O43526	872 aa		12.01	□□□□□ -0.49
UBA3-208	ENST00000465627	SHANK3	Q9BYB0	1731 aa		12.01	□□□□□ -0.49
UBA3-208	ENST00000465627	EDC4	Q6P2E9	1401 aa	Known RBP	12.01	□□□□□ -0.49
UBA3-208	ENST00000465627	BRD4	O60885	1362 aa	Predicted RBP	12	□□□□□ -0.49
UBA3-208	ENST00000465627	TERF2IP	Q9NYB0	399 aa		12	□□□□□ -0.49
UBA3-208	ENST00000465627	DCC	P43146	1447 aa		12	□□□□□ -0.49
UBA3-208	ENST00000465627	NUP188	Q5SRE5	1749 aa		11.99	□□□□□ -0.49
UBA3-208	ENST00000465627	CC2D1B	Q5T0F9	858 aa	Known RBP	11.99	□□□□□ -0.49
UBA3-208	ENST00000465627	FAM182B	Q5T319	152 aa		11.99	□□□□□ -0.49
UBA3-208	ENST00000465627	USP6	P35125	1406 aa		11.98	□□□□□ -0.49
UBA3-208	ENST00000465627	USP54	Q70EL1	1684 aa		11.98	□□□□□ -0.49
UBA3-208	ENST00000465627	CGNL1	Q0VF96	1302 aa		11.97	□□□□□ -0.49
UBA3-208	ENST00000465627	FYB1	O15117	783 aa		11.97	□□□□□ -0.49
UBA3-208	ENST00000465627	PLEKHG5	O94827	1062 aa		11.97	□□□□□ -0.49
UBA3-208	ENST00000465627	HSPA6	P17066	643 aa		11.97	□□□□□ -0.49
UBA3-208	ENST00000465627	NLRP13	Q86W25	1043 aa		11.97	□□□□□ -0.49
UBA3-208	ENST00000465627	RREB1	Q92766	1687 aa		11.97	□□□□□ -0.49
UBA3-208	ENST00000465627	ACE	P12821	1306 aa		11.97	□□□□□ -0.49
UBA3-208	ENST00000465627	DISP2	A7MBM2	1401 aa		11.96	□□□□□ -0.49
UBA3-208	ENST00000465627	PPP2R1A	P30153	589 aa		11.96	□□□□□ -0.49
UBA3-208	ENST00000465627	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.96	□□□□□ -0.49
UBA3-208	ENST00000465627	UNC5CL	Q8IV45	518 aa		11.96	□□□□□ -0.49
UBA3-208	ENST00000465627	TNS4	Q8IZW8	715 aa		11.96	□□□□□ -0.49
UBA3-208	ENST00000465627	CAMKK2	Q96RR4	588 aa		11.96	□□□□□ -0.49
UBA3-208	ENST00000465627	PNISR	Q8TF01	805 aa	Known RBP	11.95	□□□□□ -0.5
UBA3-208	ENST00000465627	C1orf167	Q5SNV9	1468 aa		11.94	□□□□□ -0.5
UBA3-208	ENST00000465627	OVOS2	A0A0J9YW53	1432 aa		11.94	□□□□□ -0.5
UBA3-208	ENST00000465627	OVOS2	Q6IE36	1432 aa		11.94	□□□□□ -0.5
UBA3-208	ENST00000465627	PIK3C2A	O00443	1686 aa		11.94	□□□□□ -0.5
UBA3-208	ENST00000465627	KIF1A	Q12756	1690 aa		11.94	□□□□□ -0.5
UBA3-208	ENST00000465627	NUTM2F	A1L443	756 aa		11.93	□□□□□ -0.5
UBA3-208	ENST00000465627	MS4A3	Q96HJ5	214 aa		11.93	□□□□□ -0.5
UBA3-208	ENST00000465627	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.93	□□□□□ -0.5
UBA3-208	ENST00000465627	MRS2	Q9HD23	443 aa		11.93	□□□□□ -0.5
UBA3-208	ENST00000465627	SLIT2	O94813	1529 aa		11.93	□□□□□ -0.5
UBA3-208	ENST00000465627	SOS2	Q07890	1332 aa	Predicted RBP	11.93	□□□□□ -0.5
UBA3-208	ENST00000465627	TRPM3	Q9HCF6	1732 aa	Predicted RBP	11.93	□□□□□ -0.5
UBA3-208	ENST00000465627	ONECUT3	O60422	494 aa	Predicted RBP	11.92	□□□□□ -0.5
UBA3-208	ENST00000465627	TTC21B	Q7Z4L5	1316 aa		11.92	□□□□□ -0.5
UBA3-208	ENST00000465627	INSR	P06213	1382 aa		11.92	□□□□□ -0.5
UBA3-208	ENST00000465627	USP31	Q70CQ4	1352 aa		11.92	□□□□□ -0.5
UBA3-208	ENST00000465627	CNGB1	Q14028	1251 aa	Predicted RBP	11.92	□□□□□ -0.5
UBA3-208	ENST00000465627	SMG6	Q86US8	1419 aa	Known RBP	11.91	□□□□□ -0.5
UBA3-208	ENST00000465627	COL3A1	P02461	1466 aa	Predicted RBP	11.91	□□□□□ -0.5
UBA3-208	ENST00000465627	GGNBP2	Q9H3C7	697 aa		11.91	□□□□□ -0.5
UBA3-208	ENST00000465627	PHF8	Q9UPP1	1060 aa		11.91	□□□□□ -0.5
UBA3-208	ENST00000465627	GOLGB1	Q14789	3259 aa	Known RBP	11.9	□□□□□ -0.5
UBA3-208	ENST00000465627	MORC1	Q86VD1	984 aa		11.9	□□□□□ -0.5
UBA3-208	ENST00000465627	NME9	Q86XW9	330 aa		11.9	□□□□□ -0.5
UBA3-208	ENST00000465627	PMFBP1	Q8TBY8	1022 aa		11.9	□□□□□ -0.5
UBA3-208	ENST00000465627	TTC21A	Q8NDW8	1320 aa		11.89	□□□□□ -0.51
UBA3-208	ENST00000465627	AATK	Q6ZMQ8	1374 aa		11.89	□□□□□ -0.51
UBA3-208	ENST00000465627	CASZ1	Q86V15	1759 aa		11.89	□□□□□ -0.51
UBA3-208	ENST00000465627		A0A0G2JS52	829 aa		11.89	□□□□□ -0.51
UBA3-208	ENST00000465627	MYT1	Q01538	1121 aa		11.89	□□□□□ -0.51
UBA3-208	ENST00000465627	ASTL	Q6HA08	431 aa	Predicted RBP	11.89	□□□□□ -0.51
UBA3-208	ENST00000465627	ORAI2	Q96SN7	254 aa		11.89	□□□□□ -0.51
UBA3-208	ENST00000465627	MAP2	P11137	1827 aa	Known RBP	11.88	□□□□□ -0.51
UBA3-208	ENST00000465627	ALS2	Q96Q42	1657 aa		11.88	□□□□□ -0.51
UBA3-208	ENST00000465627	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.88	□□□□□ -0.51	2e-7	■■■□□ 16
UBA3-208	ENST00000465627	PELP1	Q8IZL8	1130 aa	Known RBP	11.87	□□□□□ -0.51
UBA3-208	ENST00000465627	SYT17	Q9BSW7	474 aa		11.87	□□□□□ -0.51

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