RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 ZMYND15Q9H091 742 aa8.31□□□□□ -1.08
CLK1-208ENST00000464454 LCE2BO14633 110 aa8.3□□□□□ -1.08
CLK1-208ENST00000464454 NR5A1Q13285 461 aa8.3□□□□□ -1.08
CLK1-208ENST00000464454 FNBP4Q8N3X1 1017 aaPredicted RBP8.3□□□□□ -1.08
CLK1-208ENST00000464454 SEMA3FQ13275 785 aa8.29□□□□□ -1.08
CLK1-208ENST00000464454 ZNF787Q6DD87 383 aa8.29□□□□□ -1.08
CLK1-208ENST00000464454 CCDC125Q86Z20 511 aa8.29□□□□□ -1.08
CLK1-208ENST00000464454 TRIM52Q96A61 297 aa8.29□□□□□ -1.08
CLK1-208ENST00000464454 KCTD15Q96SI1 283 aaPredicted RBP8.28□□□□□ -1.08
CLK1-208ENST00000464454 FAM187AA6NFU0 413 aa8.27□□□□□ -1.09
CLK1-208ENST00000464454 TRAK2O60296 914 aa8.27□□□□□ -1.09
CLK1-208ENST00000464454 FSHRP23945 695 aa8.27□□□□□ -1.09
CLK1-208ENST00000464454 PKDCCQ504Y2 493 aa8.27□□□□□ -1.09
CLK1-208ENST00000464454 RNF20Q5VTR2 975 aa8.27□□□□□ -1.09
CLK1-208ENST00000464454 SEPT12Q8IYM1 358 aa8.27□□□□□ -1.09
CLK1-208ENST00000464454 J3QL48 77 aa8.26□□□□□ -1.09
CLK1-208ENST00000464454 DGAT1O75907 488 aa8.26□□□□□ -1.09
CLK1-208ENST00000464454 SMPD1P17405 629 aa8.26□□□□□ -1.09
CLK1-208ENST00000464454 DHX9Q08211 1270 aaKnown RBP8.26□□□□□ -1.09
CLK1-208ENST00000464454 NNTQ13423 1086 aa8.26□□□□□ -1.09
CLK1-208ENST00000464454 GRM5P41594 1212 aa8.25□□□□□ -1.09
CLK1-208ENST00000464454 ESPNB1AK53 854 aa8.24□□□□□ -1.09
CLK1-208ENST00000464454 CCDC116Q8IYX3 515 aa8.24□□□□□ -1.09
CLK1-208ENST00000464454 POM121CA8CG34 1229 aa8.23□□□□□ -1.09
CLK1-208ENST00000464454 SLFNL1Q499Z3 407 aa8.23□□□□□ -1.09
CLK1-208ENST00000464454 INTS6LQ5JSJ4 861 aaKnown RBP8.23□□□□□ -1.09
CLK1-208ENST00000464454 ALG2Q9H553 416 aa8.23□□□□□ -1.09
CLK1-208ENST00000464454 CEP126Q9P2H0 1117 aa8.23□□□□□ -1.09
CLK1-208ENST00000464454 EMILIN1Q9Y6C2 1016 aa8.23□□□□□ -1.09
CLK1-208ENST00000464454 GIGYF1O75420 1035 aaPredicted RBP8.22□□□□□ -1.09
CLK1-208ENST00000464454 AVPP01185 164 aa8.22□□□□□ -1.09
CLK1-208ENST00000464454 CTC1Q2NKJ3 1217 aa8.22□□□□□ -1.09
CLK1-208ENST00000464454 PGPEP1Q9NXJ5 209 aa8.22□□□□□ -1.09
CLK1-208ENST00000464454 NR3C2P08235 984 aa8.21□□□□□ -1.1
CLK1-208ENST00000464454 GLMNQ92990 594 aa8.21□□□□□ -1.1
CLK1-208ENST00000464454 RAB15P59190 212 aa8.2□□□□□ -1.1
CLK1-208ENST00000464454 HDGFL1Q5TGJ6 251 aa8.2□□□□□ -1.1
CLK1-208ENST00000464454 RNF135Q8IUD6 432 aa8.2□□□□□ -1.1
CLK1-208ENST00000464454 HPS1Q92902 700 aa8.2□□□□□ -1.1
CLK1-208ENST00000464454 CALR3Q96L12 384 aaKnown RBP8.2□□□□□ -1.1
CLK1-208ENST00000464454 WDR4P57081 412 aaKnown RBP8.19□□□□□ -1.1
CLK1-208ENST00000464454 PPP1R26Q5T8A7 1209 aaPredicted RBP8.19□□□□□ -1.1
CLK1-208ENST00000464454 CRIPAKQ8N1N5 446 aa8.19□□□□□ -1.1
CLK1-208ENST00000464454 NFATC2IPQ8NCF5 419 aa8.19□□□□□ -1.1
CLK1-208ENST00000464454 ERVH48-1M5A8F1 160 aa8.18□□□□□ -1.1
CLK1-208ENST00000464454 SMCPP49901 116 aaPredicted RBP8.18□□□□□ -1.1
CLK1-208ENST00000464454 ZNF777Q9ULD5 760 aaPredicted RBP8.18□□□□□ -1.1
CLK1-208ENST00000464454 CAPN5O15484 640 aaPredicted RBP8.17□□□□□ -1.1
CLK1-208ENST00000464454 ZIC2O95409 532 aaPredicted RBP8.17□□□□□ -1.1
CLK1-208ENST00000464454 TIMP2P16035 220 aa8.17□□□□□ -1.1
CLK1-208ENST00000464454 MAP7D1Q3KQU3 841 aa8.17□□□□□ -1.1
CLK1-208ENST00000464454 PHTF2Q8N3S3 785 aa8.17□□□□□ -1.1
CLK1-208ENST00000464454 ADAMTS19Q8TE59 1207 aa8.17□□□□□ -1.1
CLK1-208ENST00000464454 DOLKQ9UPQ8 538 aa8.17□□□□□ -1.1
CLK1-208ENST00000464454 PCDHB11Q9Y5F2 797 aa8.17□□□□□ -1.1
CLK1-208ENST00000464454 AXIN1O15169 862 aa8.16□□□□□ -1.1
CLK1-208ENST00000464454 MYT1Q01538 1121 aa8.16□□□□□ -1.1
CLK1-208ENST00000464454 ZNF775Q96BV0 537 aaPredicted RBP8.16□□□□□ -1.1
CLK1-208ENST00000464454 ITPKCQ96DU7 683 aa8.16□□□□□ -1.1
CLK1-208ENST00000464454 KLF16Q9BXK1 252 aaPredicted RBP8.16□□□□□ -1.1
CLK1-208ENST00000464454 ESF1Q9H501 851 aaKnown RBP8.16□□□□□ -1.1
CLK1-208ENST00000464454 LZTS3O60299 673 aaPredicted RBP8.15□□□□□ -1.1
CLK1-208ENST00000464454 ZNF784Q8NCA9 323 aaPredicted RBP8.15□□□□□ -1.1
CLK1-208ENST00000464454 SIRT1Q96EB6 747 aa8.15□□□□□ -1.1
CLK1-208ENST00000464454 CHIC2Q9UKJ5 165 aa8.15□□□□□ -1.1
CLK1-208ENST00000464454 MYCP01106 439 aaPredicted RBP8.14□□□□□ -1.11
CLK1-208ENST00000464454 SKIP12755 728 aa8.14□□□□□ -1.11
CLK1-208ENST00000464454 PLPP7Q8NBV4 271 aa8.14□□□□□ -1.11
CLK1-208ENST00000464454 CCDC85AQ96PX6 553 aaPredicted RBP8.14□□□□□ -1.11
CLK1-208ENST00000464454 ERVK-9P63128 1117 aa8.13□□□□□ -1.11
CLK1-208ENST00000464454 USP4Q13107 963 aa8.13□□□□□ -1.11
CLK1-208ENST00000464454 CC2D2BQ6DHV5 1058 aa8.13□□□□□ -1.11
CLK1-208ENST00000464454 ZFAND3Q9H8U3 227 aa8.13□□□□□ -1.11
CLK1-208ENST00000464454 TMPRSS4Q9NRS4 437 aa8.13□□□□□ -1.11
CLK1-208ENST00000464454 PIK3CDO00329 1044 aa8.12□□□□□ -1.11
CLK1-208ENST00000464454 ATP9BO43861 1147 aa8.12□□□□□ -1.11
CLK1-208ENST00000464454 UPP2O95045 317 aa8.12□□□□□ -1.11
CLK1-208ENST00000464454 UCN2Q96RP3 112 aa8.12□□□□□ -1.11
CLK1-208ENST00000464454 CYLDQ9NQC7 956 aa8.12□□□□□ -1.11
CLK1-208ENST00000464454 AAASQ9NRG9 546 aa8.12□□□□□ -1.11
CLK1-208ENST00000464454 EML3Q32P44 896 aa8.11□□□□□ -1.11
CLK1-208ENST00000464454 Q6ZVU0 165 aa8.11□□□□□ -1.11
CLK1-208ENST00000464454 MEIOBQ8N635 442 aa8.11□□□□□ -1.11
CLK1-208ENST00000464454 CCDC97Q96F63 343 aaPredicted RBP8.11□□□□□ -1.11
CLK1-208ENST00000464454 USP17L5A8MUK1 530 aa8.1□□□□□ -1.11
CLK1-208ENST00000464454 LILRA1O75019 489 aa8.1□□□□□ -1.11
CLK1-208ENST00000464454 ADH1AP07327 375 aa8.1□□□□□ -1.11
CLK1-208ENST00000464454 OXLD1Q5BKU9 147 aa8.1□□□□□ -1.11
CLK1-208ENST00000464454 CYP2U1Q7Z449 544 aa8.1□□□□□ -1.11
CLK1-208ENST00000464454 PLEKHM2Q8IWE5 1019 aa8.1□□□□□ -1.11
CLK1-208ENST00000464454 TSEN34Q9BSV6 310 aaKnown RBP8.1□□□□□ -1.11
CLK1-208ENST00000464454 PPP1R12CQ9BZL4 782 aa8.1□□□□□ -1.11
CLK1-208ENST00000464454 SERPINA10Q9UK55 444 aa8.1□□□□□ -1.11
CLK1-208ENST00000464454 PALM3A6NDB9 673 aaPredicted RBP8.09□□□□□ -1.11
CLK1-208ENST00000464454 ST8SIA5O15466 376 aa8.09□□□□□ -1.11
CLK1-208ENST00000464454 SCARF1Q14162 830 aa8.09□□□□□ -1.11
CLK1-208ENST00000464454 TBC1D9Q6ZT07 1266 aa8.09□□□□□ -1.11
CLK1-208ENST00000464454 CDCA7Q9BWT1 371 aaPredicted RBP8.09□□□□□ -1.11
CLK1-208ENST00000464454 USP17L3A6NCW0 530 aa8.08□□□□□ -1.12
CLK1-208ENST00000464454 USP17L4A6NCW7 530 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms