RNA–Protein interactions for RNA: ENST00000462351.5

PTPRN-211, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 5,099 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-211ENST00000462351 RUNDC1Q96C34 613 aa17.15■□□□□ 0.34
PTPRN-211ENST00000462351 SHTN1A0MZ66 631 aa17.15■□□□□ 0.34
PTPRN-211ENST00000462351 TAX1BP1Q86VP1 789 aa17.15■□□□□ 0.34
PTPRN-211ENST00000462351 FAM107BQ9H098 131 aa17.15■□□□□ 0.34
PTPRN-211ENST00000462351 SCAPERQ9BY12 1400 aa17.14■□□□□ 0.34
PTPRN-211ENST00000462351 BACH2Q9BYV9 841 aa17.14■□□□□ 0.34
PTPRN-211ENST00000462351 CABP2Q9NPB3 220 aa17.14■□□□□ 0.34
PTPRN-211ENST00000462351 XBP1P17861 261 aa17.14■□□□□ 0.33
PTPRN-211ENST00000462351 CCDC43Q96MW1 224 aaKnown RBP17.14■□□□□ 0.33
PTPRN-211ENST00000462351 BRPF1P55201 1214 aaPredicted RBP17.14■□□□□ 0.33
PTPRN-211ENST00000462351 IQCEQ6IPM2 695 aa17.14■□□□□ 0.33
PTPRN-211ENST00000462351 BRMS1Q9HCU9 246 aa17.14■□□□□ 0.33
PTPRN-211ENST00000462351 CIZ1Q9ULV3 898 aaPredicted RBP17.14■□□□□ 0.33
PTPRN-211ENST00000462351 CAMSAP2Q08AD1 1489 aa17.14■□□□□ 0.33
PTPRN-211ENST00000462351 TXLNBQ8N3L3 684 aa17.14■□□□□ 0.33
PTPRN-211ENST00000462351 MAGEC2Q9UBF1 373 aaPredicted RBP17.14■□□□□ 0.33
PTPRN-211ENST00000462351 IPO4Q8TEX9 1081 aaKnown RBP17.13■□□□□ 0.33
PTPRN-211ENST00000462351 RIPK4P57078 832 aa17.13■□□□□ 0.33
PTPRN-211ENST00000462351 DHX37Q8IY37 1157 aaKnown RBP17.13■□□□□ 0.33
PTPRN-211ENST00000462351 ZNF396Q96N95 335 aaPredicted RBP17.13■□□□□ 0.33
PTPRN-211ENST00000462351 AKNAQ7Z591 1439 aa17.13■□□□□ 0.33
PTPRN-211ENST00000462351 ANKRD62A6NC57 917 aa17.12■□□□□ 0.33
PTPRN-211ENST00000462351 TNMDQ9H2S6 317 aa17.12■□□□□ 0.33
PTPRN-211ENST00000462351 FAM177A1Q8N128 213 aaPredicted RBP17.12■□□□□ 0.33
PTPRN-211ENST00000462351 CLASRPQ8N2M8 674 aaKnown RBP17.12■□□□□ 0.33
PTPRN-211ENST00000462351 CRACR2AQ9BSW2 395 aa17.12■□□□□ 0.33
PTPRN-211ENST00000462351 GPATCH11Q8N954 259 aa17.12■□□□□ 0.33
PTPRN-211ENST00000462351 JMYQ8N9B5 988 aa17.11■□□□□ 0.33
PTPRN-211ENST00000462351 ZNF608Q9ULD9 1512 aaPredicted RBP17.11■□□□□ 0.33
PTPRN-211ENST00000462351 FAM193AP78312 1265 aa17.11■□□□□ 0.33
PTPRN-211ENST00000462351 NOL10Q9BSC4 688 aaKnown RBP17.11■□□□□ 0.33
PTPRN-211ENST00000462351 PLB1Q6P1J6 1458 aa17.11■□□□□ 0.33
PTPRN-211ENST00000462351 GGNBP2Q9H3C7 697 aa17.11■□□□□ 0.33
PTPRN-211ENST00000462351 WDR33Q9C0J8 1336 aaKnown RBP17.11■□□□□ 0.33
PTPRN-211ENST00000462351 STK38Q15208 465 aa17.11■□□□□ 0.33
PTPRN-211ENST00000462351 CBFA2T2O43439 604 aa17.1■□□□□ 0.33
PTPRN-211ENST00000462351 CCDC184Q52MB2 194 aa17.1■□□□□ 0.33
PTPRN-211ENST00000462351 LRRFIP2Q9Y608 721 aaKnown RBP17.1■□□□□ 0.33
PTPRN-211ENST00000462351 TEFQ10587 303 aa17.09■□□□□ 0.33
PTPRN-211ENST00000462351 DDX11Q96FC9 970 aa17.09■□□□□ 0.33
PTPRN-211ENST00000462351 FILIP1Q7Z7B0 1213 aa17.09■□□□□ 0.33
PTPRN-211ENST00000462351 ZHX1Q9UKY1 873 aaPredicted RBP17.09■□□□□ 0.33
PTPRN-211ENST00000462351 C1orf141Q5JVX7 400 aa17.09■□□□□ 0.33
PTPRN-211ENST00000462351 PANK1Q8TE04 598 aa17.09■□□□□ 0.33
PTPRN-211ENST00000462351 KRT85P78386 507 aa17.09■□□□□ 0.33
PTPRN-211ENST00000462351 MAGI1Q96QZ7 1491 aaPredicted RBP17.08■□□□□ 0.33
PTPRN-211ENST00000462351 FKBP5Q13451 457 aaPredicted RBP17.08■□□□□ 0.33
PTPRN-211ENST00000462351 DACH1Q9UI36 760 aa17.08■□□□□ 0.33
PTPRN-211ENST00000462351 ADAMTS8Q9UP79 889 aa17.08■□□□□ 0.33
PTPRN-211ENST00000462351 MEX3CQ5U5Q3 659 aaKnown RBP17.08■□□□□ 0.32
PTPRN-211ENST00000462351 TRERF1Q96PN7 1200 aa17.08■□□□□ 0.32
PTPRN-211ENST00000462351 RPRD2Q5VT52 1461 aaKnown RBP17.07■□□□□ 0.32
PTPRN-211ENST00000462351 ARHGEF11O15085 1522 aa17.07■□□□□ 0.32
PTPRN-211ENST00000462351 K7ELQ4 463 aaPredicted RBP17.07■□□□□ 0.32
PTPRN-211ENST00000462351 TXLNAP40222 546 aa17.07■□□□□ 0.32
PTPRN-211ENST00000462351 PTPN14Q15678 1187 aa17.07■□□□□ 0.32
PTPRN-211ENST00000462351 RAD21O60216 631 aa17.06■□□□□ 0.32
PTPRN-211ENST00000462351 CEP57L1Q8IYX8 460 aa17.06■□□□□ 0.32
PTPRN-211ENST00000462351 KIF18AQ8NI77 898 aa17.06■□□□□ 0.32
PTPRN-211ENST00000462351 C11orf95C9JLR9 678 aaPredicted RBP17.06■□□□□ 0.32
PTPRN-211ENST00000462351 DDX58O95786 925 aaKnown RBP17.06■□□□□ 0.32
PTPRN-211ENST00000462351 PPP2R1AP30153 589 aa17.06■□□□□ 0.32
PTPRN-211ENST00000462351 TICAM2Q86XR7 235 aa17.06■□□□□ 0.32
PTPRN-211ENST00000462351 PSME1Q06323 249 aa17.06■□□□□ 0.32
PTPRN-211ENST00000462351 SYCP1Q15431 976 aa17.06■□□□□ 0.32
PTPRN-211ENST00000462351 CNTROBQ8N137 903 aa17.05■□□□□ 0.32
PTPRN-211ENST00000462351 TRIM34Q9BYJ4 488 aa17.05■□□□□ 0.32
PTPRN-211ENST00000462351 BBXQ8WY36 941 aaPredicted RBP17.05■□□□□ 0.32
PTPRN-211ENST00000462351 PDZRN3Q9UPQ7 1066 aa17.05■□□□□ 0.32
PTPRN-211ENST00000462351 NINLQ9Y2I6 1382 aa17.05■□□□□ 0.32
PTPRN-211ENST00000462351 ATP2B1P20020 1258 aa17.05■□□□□ 0.32
PTPRN-211ENST00000462351 MICALCLQ6ZW33 695 aa17.05■□□□□ 0.32
PTPRN-211ENST00000462351 NCOA1Q15788 1441 aa17.05■□□□□ 0.32
PTPRN-211ENST00000462351 TCOF1Q13428 1488 aaKnown RBP17.05■□□□□ 0.32
PTPRN-211ENST00000462351 EIF2S2P20042 333 aaKnown RBP17.04■□□□□ 0.32
PTPRN-211ENST00000462351 MTHFSP49914 203 aa17.04■□□□□ 0.32
PTPRN-211ENST00000462351 RBM33Q96EV2 1170 aaKnown RBP17.04■□□□□ 0.32
PTPRN-211ENST00000462351 TIGD1Q96MW7 591 aa17.04■□□□□ 0.32
PTPRN-211ENST00000462351 GOLGA6L10A0A0M3HER8 536 aa17.04■□□□□ 0.32
PTPRN-211ENST00000462351 IBSPP21815 317 aaPredicted RBP17.04■□□□□ 0.32
PTPRN-211ENST00000462351 MAP9Q49MG5 647 aa17.04■□□□□ 0.32
PTPRN-211ENST00000462351 ARHGAP29Q52LW3 1261 aa17.04■□□□□ 0.32
PTPRN-211ENST00000462351 SLC26A8Q96RN1 970 aa17.04■□□□□ 0.32
PTPRN-211ENST00000462351 GTF2F1P35269 517 aaKnown RBP eCLIP17.04■□□□□ 0.32
PTPRN-211ENST00000462351 CCDC141Q6ZP82 1450 aa17.03■□□□□ 0.32
PTPRN-211ENST00000462351 HMOX1P09601 288 aa17.03■□□□□ 0.32
PTPRN-211ENST00000462351 GNAI1P63096 354 aa17.03■□□□□ 0.32
PTPRN-211ENST00000462351 CTDP1Q9Y5B0 961 aaPredicted RBP17.03■□□□□ 0.32
PTPRN-211ENST00000462351 RAPGEF3O95398 923 aa17.02■□□□□ 0.32
PTPRN-211ENST00000462351 MAP2K1Q02750 393 aaPredicted RBP17.02■□□□□ 0.32
PTPRN-211ENST00000462351 ADAMTS12P58397 1594 aa17.02■□□□□ 0.32
PTPRN-211ENST00000462351 KIF14Q15058 1648 aa17.02■□□□□ 0.32
PTPRN-211ENST00000462351 ME1P48163 572 aa17.02■□□□□ 0.32
PTPRN-211ENST00000462351 CCAR1Q8IX12 1150 aaKnown RBP17.02■□□□□ 0.32
PTPRN-211ENST00000462351 CEBPZQ03701 1054 aaKnown RBP17.02■□□□□ 0.31
PTPRN-211ENST00000462351 STIM1Q13586 685 aa17.02■□□□□ 0.31
PTPRN-211ENST00000462351 PRAM1Q96QH2 718 aa17.02■□□□□ 0.31
PTPRN-211ENST00000462351 NUP62CLQ9H1M0 184 aa17.02■□□□□ 0.31
PTPRN-211ENST00000462351 RAPGEF6Q8TEU7 1601 aa17.01■□□□□ 0.31
PTPRN-211ENST00000462351 WASHC4Q2M389 1173 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms