RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 HAP1P54257 671 aaPredicted RBP13.87□□□□□ -0.19
USP39-210ENST00000459775 NSD2O96028 1365 aa13.86□□□□□ -0.19
USP39-210ENST00000459775 COL22A1Q8NFW1 1626 aaPredicted RBP13.86□□□□□ -0.19
USP39-210ENST00000459775 CABLES1Q8TDN4 633 aa13.86□□□□□ -0.19
USP39-210ENST00000459775 TRPC5Q9UL62 973 aaPredicted RBP13.86□□□□□ -0.19
USP39-210ENST00000459775 TTC21AQ8NDW8 1320 aa13.86□□□□□ -0.19
USP39-210ENST00000459775 PIK3C2AO00443 1686 aa13.85□□□□□ -0.19
USP39-210ENST00000459775 NPHP3Q7Z494 1330 aa13.85□□□□□ -0.19
USP39-210ENST00000459775 BRD2P25440 801 aaKnown RBP13.85□□□□□ -0.19
USP39-210ENST00000459775 POLKQ9UBT6 870 aa13.85□□□□□ -0.19
USP39-210ENST00000459775 KIF20BQ96Q89 1820 aa13.85□□□□□ -0.19
USP39-210ENST00000459775 OVOS2A0A0J9YW53 1432 aa13.85□□□□□ -0.19
USP39-210ENST00000459775 OVOS2Q6IE36 1432 aa13.85□□□□□ -0.19
USP39-210ENST00000459775 PNISRQ8TF01 805 aaKnown RBP13.84□□□□□ -0.19
USP39-210ENST00000459775 BRD4O60885 1362 aaPredicted RBP13.84□□□□□ -0.19
USP39-210ENST00000459775 ATRNO75882 1429 aa13.83□□□□□ -0.19
USP39-210ENST00000459775 PXDNQ92626 1479 aa13.83□□□□□ -0.2
USP39-210ENST00000459775 ZBTB7CA1YPR0 619 aa13.83□□□□□ -0.2
USP39-210ENST00000459775 CNKSR2Q8WXI2 1034 aa13.83□□□□□ -0.2
USP39-210ENST00000459775 SAMD1Q6SPF0 538 aaPredicted RBP13.82□□□□□ -0.2
USP39-210ENST00000459775 KIF1AQ12756 1690 aa13.82□□□□□ -0.2
USP39-210ENST00000459775 FNBP4Q8N3X1 1017 aaPredicted RBP13.81□□□□□ -0.2
USP39-210ENST00000459775 USP21Q9UK80 565 aa13.81□□□□□ -0.2
USP39-210ENST00000459775 SOS2Q07890 1332 aaPredicted RBP13.81□□□□□ -0.2
USP39-210ENST00000459775 USP31Q70CQ4 1352 aa13.81□□□□□ -0.2
USP39-210ENST00000459775 TRPM3Q9HCF6 1732 aaPredicted RBP13.81□□□□□ -0.2
USP39-210ENST00000459775 SPATA31A3Q5VYP0 1347 aa13.8□□□□□ -0.2
USP39-210ENST00000459775 ADAMTS8Q9UP79 889 aa13.8□□□□□ -0.2
USP39-210ENST00000459775 MAP3K19Q56UN5 1328 aa13.8□□□□□ -0.2
USP39-210ENST00000459775 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.79□□□□□ -0.2
USP39-210ENST00000459775 ANKRD26Q9UPS8 1709 aa13.79□□□□□ -0.2
USP39-210ENST00000459775 GCP02774 474 aa13.79□□□□□ -0.2
USP39-210ENST00000459775 ZC3H6P61129 1189 aaKnown RBP13.79□□□□□ -0.2
USP39-210ENST00000459775 HSP90AB2PQ58FF8 381 aa13.79□□□□□ -0.2
USP39-210ENST00000459775 MARF1Q9Y4F3 1742 aaKnown RBP13.79□□□□□ -0.2
USP39-210ENST00000459775 TNS3Q68CZ2 1445 aa13.78□□□□□ -0.2
USP39-210ENST00000459775 ADAMTS2O95450 1211 aa13.78□□□□□ -0.2
USP39-210ENST00000459775 SBNO1A3KN83 1393 aa13.78□□□□□ -0.2
USP39-210ENST00000459775 LRP5O75197 1615 aa13.77□□□□□ -0.2
USP39-210ENST00000459775 AATKQ6ZMQ8 1374 aa13.76□□□□□ -0.21
USP39-210ENST00000459775 CDK11BP21127 795 aaKnown RBP13.76□□□□□ -0.21
USP39-210ENST00000459775 CCDC146Q8IYE0 955 aa13.76□□□□□ -0.21
USP39-210ENST00000459775 U2SURPO15042 1029 aaKnown RBP13.76□□□□□ -0.21
USP39-210ENST00000459775 BLMP54132 1417 aaPredicted RBP13.75□□□□□ -0.21
USP39-210ENST00000459775 AMPHP49418 695 aa13.75□□□□□ -0.21
USP39-210ENST00000459775 LTV1Q96GA3 475 aaPredicted RBP13.75□□□□□ -0.21
USP39-210ENST00000459775 SALL2Q9Y467 1007 aaPredicted RBP13.75□□□□□ -0.21
USP39-210ENST00000459775 ALS2Q96Q42 1657 aa13.75□□□□□ -0.21
USP39-210ENST00000459775 USP19O94966 1318 aa13.75□□□□□ -0.21
USP39-210ENST00000459775 WDR43Q15061 677 aaKnown RBP eCLIP13.75□□□□□ -0.21
USP39-210ENST00000459775 CHRNA2Q15822 529 aa13.75□□□□□ -0.21
USP39-210ENST00000459775 CFAP53Q96M91 514 aa13.75□□□□□ -0.21
USP39-210ENST00000459775 MAP2P11137 1827 aaKnown RBP13.74□□□□□ -0.21
USP39-210ENST00000459775 PEAK1Q9H792 1746 aa13.74□□□□□ -0.21
USP39-210ENST00000459775 HNRNPUQ00839 825 aaKnown RBP eCLIP13.74□□□□□ -0.21
USP39-210ENST00000459775 COL3A1P02461 1466 aaPredicted RBP13.74□□□□□ -0.21
USP39-210ENST00000459775 DIAPH1O60610 1272 aaKnown RBP13.73□□□□□ -0.21
USP39-210ENST00000459775 AXIN2Q9Y2T1 843 aa13.73□□□□□ -0.21
USP39-210ENST00000459775 NFAT5O94916 1531 aa13.73□□□□□ -0.21
USP39-210ENST00000459775 U2AF1L5P0DN76 240 aaPredicted RBP13.73□□□□□ -0.21
USP39-210ENST00000459775 HOXC9P31274 260 aa13.73□□□□□ -0.21
USP39-210ENST00000459775 U2AF1Q01081 240 aaKnown RBP eCLIP13.73□□□□□ -0.21
USP39-210ENST00000459775 EIF4A2Q14240 407 aaKnown RBP13.73□□□□□ -0.21
USP39-210ENST00000459775 HMOX1P09601 288 aa13.72□□□□□ -0.21
USP39-210ENST00000459775 IL13P35225 146 aa13.72□□□□□ -0.21
USP39-210ENST00000459775 ARHGEF25Q86VW2 580 aa13.72□□□□□ -0.21
USP39-210ENST00000459775 BCL9LQ86UU0 1499 aa13.72□□□□□ -0.21
USP39-210ENST00000459775 KCNH5Q8NCM2 988 aa13.72□□□□□ -0.21
USP39-210ENST00000459775 SMG6Q86US8 1419 aaKnown RBP13.71□□□□□ -0.21
USP39-210ENST00000459775 ARHGEF10O15013 1369 aa13.71□□□□□ -0.21
USP39-210ENST00000459775 SLIT3O75094 1523 aa13.7□□□□□ -0.22
USP39-210ENST00000459775 FGD1P98174 961 aa13.7□□□□□ -0.22
USP39-210ENST00000459775 AEBP1Q8IUX7 1158 aa13.7□□□□□ -0.22
USP39-210ENST00000459775 GJD4Q96KN9 370 aaPredicted RBP13.7□□□□□ -0.22
USP39-210ENST00000459775 KIAA0232Q92628 1395 aa13.7□□□□□ -0.22
USP39-210ENST00000459775 FLT4P35916 1363 aa13.69□□□□□ -0.22
USP39-210ENST00000459775 SF3B2Q13435 895 aaKnown RBP13.69□□□□□ -0.22
USP39-210ENST00000459775 USHBP1Q8N6Y0 703 aa13.69□□□□□ -0.22
USP39-210ENST00000459775 IP6K1Q92551 441 aa13.69□□□□□ -0.22
USP39-210ENST00000459775 USP54Q70EL1 1684 aa13.68□□□□□ -0.22
USP39-210ENST00000459775 INSRP06213 1382 aa13.68□□□□□ -0.22
USP39-210ENST00000459775 DHX37Q8IY37 1157 aaKnown RBP13.68□□□□□ -0.22
USP39-210ENST00000459775 RRP7AQ9Y3A4 280 aaKnown RBP13.68□□□□□ -0.22
USP39-210ENST00000459775 SLIT2O94813 1529 aa13.67□□□□□ -0.22
USP39-210ENST00000459775 APAF1O14727 1248 aa13.67□□□□□ -0.22
USP39-210ENST00000459775 ANP32EQ9BTT0 268 aa13.67□□□□□ -0.22
USP39-210ENST00000459775 ANO8Q9HCE9 1232 aaPredicted RBP13.67□□□□□ -0.22
USP39-210ENST00000459775 NUDCQ9Y266 331 aa13.67□□□□□ -0.22
USP39-210ENST00000459775 GLI3P10071 1580 aa13.66□□□□□ -0.22
USP39-210ENST00000459775 FAM83GA6ND36 823 aa13.66□□□□□ -0.22
USP39-210ENST00000459775 NEUROD2Q15784 382 aa13.66□□□□□ -0.22
USP39-210ENST00000459775 SULT6B1Q6IMI4 303 aa13.66□□□□□ -0.22
USP39-210ENST00000459775 EYA1Q99502 592 aa13.66□□□□□ -0.22
USP39-210ENST00000459775 PRDM11Q9NQV5 511 aa13.66□□□□□ -0.22
USP39-210ENST00000459775 LTN1O94822 1766 aa13.66□□□□□ -0.22
USP39-210ENST00000459775 PHRF1Q9P1Y6 1649 aaKnown RBP13.66□□□□□ -0.22
USP39-210ENST00000459775 UNC5CLQ8IV45 518 aa13.66□□□□□ -0.22
USP39-210ENST00000459775 PHACTR3Q96KR7 559 aa13.66□□□□□ -0.22
USP39-210ENST00000459775 NBPF6Q5VWK0 638 aa13.65□□□□□ -0.22
USP39-210ENST00000459775 NBPF4Q96M43 638 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms