RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.42■■□□□ 1.34
SEMA3B-209ENST00000456560 KIF16BQ96L93 1317 aa23.42■■□□□ 1.34
SEMA3B-209ENST00000456560 BRPF1P55201 1214 aaPredicted RBP23.41■■□□□ 1.34
SEMA3B-209ENST00000456560 ZNF428Q96B54 188 aa23.41■■□□□ 1.34
SEMA3B-209ENST00000456560 LTKP29376 864 aa23.41■■□□□ 1.34
SEMA3B-209ENST00000456560 IPO8O15397 1037 aaKnown RBP23.4■■□□□ 1.34
SEMA3B-209ENST00000456560 HDAC1Q13547 482 aaPredicted RBP23.4■■□□□ 1.34
SEMA3B-209ENST00000456560 CALD1Q05682 793 aaKnown RBP23.4■■□□□ 1.34
SEMA3B-209ENST00000456560 TMEM57Q8N5G2 664 aa23.39■■□□□ 1.34
SEMA3B-209ENST00000456560 TOPAZ1Q8N9V7 1692 aa23.39■■□□□ 1.33
SEMA3B-209ENST00000456560 SEC24BO95487 1268 aa23.39■■□□□ 1.33
SEMA3B-209ENST00000456560 ZNF853P0CG23 659 aa23.39■■□□□ 1.33
SEMA3B-209ENST00000456560 SLC4A3P48751 1232 aa23.39■■□□□ 1.33
SEMA3B-209ENST00000456560 RRS1Q15050 365 aaKnown RBP23.39■■□□□ 1.33
SEMA3B-209ENST00000456560 ITPRIPQ8IWB1 547 aa23.39■■□□□ 1.33
SEMA3B-209ENST00000456560 NRKQ7Z2Y5 1582 aa23.38■■□□□ 1.33
SEMA3B-209ENST00000456560 IFT57Q9NWB7 429 aa23.37■■□□□ 1.33
SEMA3B-209ENST00000456560 PLEKHG3A1L390 1219 aa23.37■■□□□ 1.33
SEMA3B-209ENST00000456560 GNAI1P63096 354 aa23.36■■□□□ 1.33
SEMA3B-209ENST00000456560 THUMPD2Q9BTF0 503 aaKnown RBP23.36■■□□□ 1.33
SEMA3B-209ENST00000456560 ZBTB40Q9NUA8 1239 aa23.36■■□□□ 1.33
SEMA3B-209ENST00000456560 VAMP4O75379 141 aa23.36■■□□□ 1.33
SEMA3B-209ENST00000456560 TTC21BQ7Z4L5 1316 aa23.35■■□□□ 1.33
SEMA3B-209ENST00000456560 DAXXQ9UER7 740 aaPredicted RBP23.35■■□□□ 1.33
SEMA3B-209ENST00000456560 DLG5Q8TDM6 1919 aa23.35■■□□□ 1.33
SEMA3B-209ENST00000456560 KDM4FA0A1W2PPD8 638 aa23.35■■□□□ 1.33
SEMA3B-209ENST00000456560 PTPRUQ92729 1446 aa23.34■■□□□ 1.33
SEMA3B-209ENST00000456560 CEP170BQ9Y4F5 1589 aaPredicted RBP23.34■■□□□ 1.33
SEMA3B-209ENST00000456560 THEMISQ8N1K5 641 aaPredicted RBP23.34■■□□□ 1.33
SEMA3B-209ENST00000456560 ACEP12821 1306 aa23.33■■□□□ 1.33
SEMA3B-209ENST00000456560 LMOD3Q0VAK6 560 aa23.33■■□□□ 1.33
SEMA3B-209ENST00000456560 MRPL50Q8N5N7 158 aaKnown RBP23.33■■□□□ 1.33
SEMA3B-209ENST00000456560 SMC5Q8IY18 1101 aa23.32■■□□□ 1.32
SEMA3B-209ENST00000456560 OVOS2A0A0J9YW53 1432 aa23.32■■□□□ 1.32
SEMA3B-209ENST00000456560 OVOS2Q6IE36 1432 aa23.32■■□□□ 1.32
SEMA3B-209ENST00000456560 MBIPQ9NS73 344 aa23.32■■□□□ 1.32
SEMA3B-209ENST00000456560 ARHGAP45Q92619 1136 aa23.31■■□□□ 1.32
SEMA3B-209ENST00000456560 ARHGAP23Q9P227 1491 aa23.31■■□□□ 1.32
SEMA3B-209ENST00000456560 TSPYL6Q8N831 410 aa23.31■■□□□ 1.32
SEMA3B-209ENST00000456560 SLIT1O75093 1534 aa23.3■■□□□ 1.32
SEMA3B-209ENST00000456560 USP6P35125 1406 aa23.3■■□□□ 1.32
SEMA3B-209ENST00000456560 PIK3R4Q99570 1358 aa23.3■■□□□ 1.32
SEMA3B-209ENST00000456560 CFAP44Q96MT7 982 aa23.3■■□□□ 1.32
SEMA3B-209ENST00000456560 EID1Q9Y6B2 187 aa23.3■■□□□ 1.32
SEMA3B-209ENST00000456560 PTCH1Q13635 1447 aa23.29■■□□□ 1.32
SEMA3B-209ENST00000456560 IL27Q8NEV9 243 aa23.29■■□□□ 1.32
SEMA3B-209ENST00000456560 NALCNQ8IZF0 1738 aa23.29■■□□□ 1.32
SEMA3B-209ENST00000456560 EIF4A2Q14240 407 aaKnown RBP23.28■■□□□ 1.32
SEMA3B-209ENST00000456560 SSH2Q76I76 1423 aa23.28■■□□□ 1.32
SEMA3B-209ENST00000456560 SLC26A8Q96RN1 970 aa23.28■■□□□ 1.32
SEMA3B-209ENST00000456560 SETD1BQ9UPS6 1966 aaKnown RBP23.27■■□□□ 1.32
SEMA3B-209ENST00000456560 USP31Q70CQ4 1352 aa23.27■■□□□ 1.32
SEMA3B-209ENST00000456560 TBX22Q9Y458 520 aa23.27■■□□□ 1.31
SEMA3B-209ENST00000456560 PEAK1Q9H792 1746 aa23.25■■□□□ 1.31
SEMA3B-209ENST00000456560 AMOTL2Q9Y2J4 779 aa23.25■■□□□ 1.31
SEMA3B-209ENST00000456560 NUTM2FA1L443 756 aa23.24■■□□□ 1.31
SEMA3B-209ENST00000456560 FAM83GA6ND36 823 aa23.24■■□□□ 1.31
SEMA3B-209ENST00000456560 ZBTB7BO15156 539 aaPredicted RBP23.24■■□□□ 1.31
SEMA3B-209ENST00000456560 TWISTNBQ3B726 338 aaPredicted RBP23.24■■□□□ 1.31
SEMA3B-209ENST00000456560 C8orf58Q8NAV2 365 aa23.24■■□□□ 1.31
SEMA3B-209ENST00000456560 AEBP1Q8IUX7 1158 aa23.24■■□□□ 1.31
SEMA3B-209ENST00000456560 TBC1D32Q96NH3 1257 aa23.24■■□□□ 1.31
SEMA3B-209ENST00000456560 RGPD1P0DJD0 1748 aa23.23■■□□□ 1.31
SEMA3B-209ENST00000456560 NFKBIBQ15653 356 aa23.23■■□□□ 1.31
SEMA3B-209ENST00000456560 SULT6B1Q6IMI4 303 aa23.23■■□□□ 1.31
SEMA3B-209ENST00000456560 ABCC4O15439 1325 aa23.22■■□□□ 1.31
SEMA3B-209ENST00000456560 ZNF142P52746 1687 aaPredicted RBP23.22■■□□□ 1.31
SEMA3B-209ENST00000456560 ELL2O00472 640 aaPredicted RBP23.21■■□□□ 1.31
SEMA3B-209ENST00000456560 NUCB1Q02818 461 aa23.21■■□□□ 1.31
SEMA3B-209ENST00000456560 DCTN1Q14203 1278 aa23.21■■□□□ 1.31
SEMA3B-209ENST00000456560 CHMP4BQ9H444 224 aaKnown RBP23.21■■□□□ 1.31
SEMA3B-209ENST00000456560 UPF2Q9HAU5 1272 aaKnown RBP23.21■■□□□ 1.31
SEMA3B-209ENST00000456560 TTC21AQ8NDW8 1320 aa23.2■■□□□ 1.3
SEMA3B-209ENST00000456560 HSP90AB2PQ58FF8 381 aa23.19■■□□□ 1.3
SEMA3B-209ENST00000456560 DIP2AQ14689 1571 aa23.19■■□□□ 1.3
SEMA3B-209ENST00000456560 RTN4Q9NQC3 1192 aaKnown RBP23.18■■□□□ 1.3
SEMA3B-209ENST00000456560 BECN1Q14457 450 aa23.18■■□□□ 1.3
SEMA3B-209ENST00000456560 ANKLE2Q86XL3 938 aa23.18■■□□□ 1.3
SEMA3B-209ENST00000456560 API5Q9BZZ5 524 aaKnown RBP23.17■■□□□ 1.3
SEMA3B-209ENST00000456560 GSE1Q14687 1217 aa23.16■■□□□ 1.3
SEMA3B-209ENST00000456560 CHL1O00533 1208 aa23.16■■□□□ 1.3
SEMA3B-209ENST00000456560 HSPA2P54652 639 aa23.15■■□□□ 1.3
SEMA3B-209ENST00000456560 XRN1Q8IZH2 1706 aaKnown RBP23.15■■□□□ 1.3
SEMA3B-209ENST00000456560 CHD1LQ86WJ1 897 aa23.14■■□□□ 1.3
SEMA3B-209ENST00000456560 ARHGEF10O15013 1369 aa23.14■■□□□ 1.29
SEMA3B-209ENST00000456560 KIF24Q5T7B8 1368 aa23.14■■□□□ 1.29
SEMA3B-209ENST00000456560 MAP3K19Q56UN5 1328 aa23.14■■□□□ 1.29
SEMA3B-209ENST00000456560 GCC1Q96CN9 775 aa23.13■■□□□ 1.29
SEMA3B-209ENST00000456560 RGPD8O14715 1765 aaPredicted RBP23.13■■□□□ 1.29
SEMA3B-209ENST00000456560 FMN2Q9NZ56 1722 aa23.13■■□□□ 1.29
SEMA3B-209ENST00000456560 KIAA0232Q92628 1395 aa23.12■■□□□ 1.29
SEMA3B-209ENST00000456560 SIRT2Q8IXJ6 389 aa23.12■■□□□ 1.29
SEMA3B-209ENST00000456560 SBNO1A3KN83 1393 aa23.11■■□□□ 1.29
SEMA3B-209ENST00000456560 LNPKQ9C0E8 428 aa23.11■■□□□ 1.29
SEMA3B-209ENST00000456560 C1orf115Q9H7X2 142 aa23.11■■□□□ 1.29
SEMA3B-209ENST00000456560 MCM10Q7L590 875 aa23.1■■□□□ 1.29
SEMA3B-209ENST00000456560 CRB1P82279 1406 aa23.1■■□□□ 1.29
SEMA3B-209ENST00000456560 NGDNQ8NEJ9 315 aaKnown RBP23.1■■□□□ 1.29
SEMA3B-209ENST00000456560 ANO8Q9HCE9 1232 aaPredicted RBP23.1■■□□□ 1.29
SEMA3B-209ENST00000456560 FLT4P35916 1363 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms