RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 SRPK2P78362 688 aaKnown RBP6.14□□□□□ -1.43
CSMD3-204ENST00000455883 KRT85P78386 507 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 PLCD3Q8N3E9 789 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 C22orf23Q9BZE7 217 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 TSPY26PQ9H489 355 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 TPRP12270 2363 aaKnown RBP6.14□□□□□ -1.43
CSMD3-204ENST00000455883 PPFIA3O75145 1194 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 SMC1AQ14683 1233 aaKnown RBP6.14□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC43Q96MW1 224 aaKnown RBP6.14□□□□□ -1.43
CSMD3-204ENST00000455883 SH2B1Q9NRF2 756 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-204ENST00000455883 CEP131Q9UPN4 1083 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 LRRC9Q6ZRR7 1453 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 ESPNB1AK53 854 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 PRPHP41219 470 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 CRACR2AQ9BSW2 395 aa6.14□□□□□ -1.43
CSMD3-204ENST00000455883 ZNF397Q8NF99 534 aaPredicted RBP6.14□□□□□ -1.43
CSMD3-204ENST00000455883 SEPT7Q16181 437 aaKnown RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 MAGEC2Q9UBF1 373 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 MYO1BO43795 1136 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC38Q502W7 563 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 CNTROBQ8N137 903 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 ARID3AQ99856 593 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 ZNF287Q9HBT7 754 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 VIRMAQ69YN4 1812 aaKnown RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 TULP1O00294 542 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 NUTM1Q86Y26 1132 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 P3H3Q8IVL6 736 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 TACO1Q9BSH4 297 aaKnown RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 SALL2Q9Y467 1007 aaPredicted RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 POTEJP0CG39 1038 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 C6orf163Q5TEZ5 329 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 ZMYM4Q5VZL5 1548 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 DDX46Q7L014 1031 aaKnown RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 CLSTN1O94985 981 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 R3HCC1Q9Y3T6 440 aaKnown RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 MYO7AQ13402 2215 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 PPP4R3BQ5MIZ7 849 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 RBM26Q5T8P6 1007 aaKnown RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 ZSCAN25Q6NSZ9 544 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 CLUAP1Q96AJ1 413 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 IQCDQ96DY2 449 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 GTF2F1P35269 517 aaKnown RBP eCLIP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 BICD2Q8TD16 824 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 EID1Q9Y6B2 187 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 TAF7LQ5H9L4 462 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 SPATS2Q86XZ4 545 aaKnown RBP6.13□□□□□ -1.43
CSMD3-204ENST00000455883 CEP83Q9Y592 693 aa6.13□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC172P0C7W6 258 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 UVSSAQ2YD98 709 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 TRIM22Q8IYM9 498 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC148Q8NFR7 591 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 ARHGEF12Q9NZN5 1544 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 SDF4Q9BRK5 362 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 BIVM-ERCC5R4GMW8 1640 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 UBXN4Q92575 508 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 GPRASP1Q5JY77 1395 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 TMCO5BA8MYB1 307 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 FAM135AQ9P2D6 1515 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 BMP15O95972 392 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 SFPQP23246 707 aaKnown RBP eCLIP6.12□□□□□ -1.43
CSMD3-204ENST00000455883 SYCP1Q15431 976 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 PPFIBP1Q86W92 1011 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 SUDS3Q9H7L9 328 aaPredicted RBP6.12□□□□□ -1.43
CSMD3-204ENST00000455883 TMCO3Q6UWJ1 677 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 CTNNA3Q9UI47 895 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC146Q8IYE0 955 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 RUNDC1Q96C34 613 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 RAB34Q9BZG1 259 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 SARNPP82979 210 aaKnown RBP6.12□□□□□ -1.43
CSMD3-204ENST00000455883 IFI16Q16666 785 aaKnown RBP6.12□□□□□ -1.43
CSMD3-204ENST00000455883 FERMT1Q9BQL6 677 aa6.12□□□□□ -1.43
CSMD3-204ENST00000455883 MARCH6O60337 910 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 ARID4AP29374 1257 aaPredicted RBP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 PLCD4Q9BRC7 762 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 CCDC196A0A1B0GTZ2 297 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 USO1O60763 962 aaKnown RBP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 KANK3Q6NY19 840 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 CC2D1BQ5T0F9 858 aaKnown RBP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 CCAR2Q8N163 923 aaKnown RBP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 TRIM5Q9C035 493 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 GCC2Q8IWJ2 1684 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 CCT4P50991 539 aaKnown RBP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 WDR63Q8IWG1 891 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 NKTRP30414 1462 aaKnown RBP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 MIPOL1Q8TD10 442 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 PTPN23Q9H3S7 1636 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 MROH2BQ7Z745 1585 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 KIF3CO14782 793 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 BMS1Q14692 1282 aaKnown RBP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 TIGD1Q96MW7 591 aa6.11□□□□□ -1.43
CSMD3-204ENST00000455883 NSRP1Q9H0G5 558 aaKnown RBP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 KDM5AP29375 1690 aaKnown RBP6.11□□□□□ -1.43
CSMD3-204ENST00000455883 TRAF1Q13077 416 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 ARFGAP2Q8N6H7 521 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 JAKMIP2Q96AA8 810 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 BMP2KQ9NSY1 1161 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 PPP1R1BQ9UD71 204 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-204ENST00000455883 CLIP2Q9UDT6 1046 aa6.1□□□□□ -1.43
CSMD3-204ENST00000455883 RAD50Q92878 1312 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms