RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SPATA31A3Q5VYP0 1347 aa12.05□□□□□ -0.48
SYNE1-214ENST00000454018 LRRC59Q96AG4 307 aaKnown RBP12.05□□□□□ -0.48
SYNE1-214ENST00000454018 PNPLA6Q8IY17 1366 aa12.04□□□□□ -0.48
SYNE1-214ENST00000454018 JCADQ9P266 1359 aa12.04□□□□□ -0.48
SYNE1-214ENST00000454018 HSPA1LP34931 641 aa12.04□□□□□ -0.48
SYNE1-214ENST00000454018 BCL11BQ9C0K0 894 aaPredicted RBP12.04□□□□□ -0.48
SYNE1-214ENST00000454018 STK24Q9Y6E0 443 aa12.04□□□□□ -0.48
SYNE1-214ENST00000454018 SLIT3O75094 1523 aa12.04□□□□□ -0.48
SYNE1-214ENST00000454018 TTC21BQ7Z4L5 1316 aa12.04□□□□□ -0.48
SYNE1-214ENST00000454018 MAP2P11137 1827 aaKnown RBP12.03□□□□□ -0.48
SYNE1-214ENST00000454018 NSD2O96028 1365 aa12.03□□□□□ -0.48
SYNE1-214ENST00000454018 PANK3Q9H999 370 aa12.03□□□□□ -0.48
SYNE1-214ENST00000454018 OVOS2A0A0J9YW53 1432 aa12.03□□□□□ -0.48
SYNE1-214ENST00000454018 OVOS2Q6IE36 1432 aa12.03□□□□□ -0.48
SYNE1-214ENST00000454018 CGNL1Q0VF96 1302 aa12.03□□□□□ -0.48
SYNE1-214ENST00000454018 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.02□□□□□ -0.48
SYNE1-214ENST00000454018 PAK3O75914 559 aaPredicted RBP12.02□□□□□ -0.48
SYNE1-214ENST00000454018 ZFP91Q96JP5 570 aaPredicted RBP12.02□□□□□ -0.48
SYNE1-214ENST00000454018 USP31Q70CQ4 1352 aa12.02□□□□□ -0.49
SYNE1-214ENST00000454018 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.01□□□□□ -0.49
SYNE1-214ENST00000454018 ABTB2Q8N961 1025 aa12.01□□□□□ -0.49
SYNE1-214ENST00000454018 SGIP1Q9BQI5 828 aa12.01□□□□□ -0.49
SYNE1-214ENST00000454018 CARD14Q9BXL6 1004 aa12.01□□□□□ -0.49
SYNE1-214ENST00000454018 PLCH1Q4KWH8 1693 aa12□□□□□ -0.49
SYNE1-214ENST00000454018 NFAT5O94916 1531 aa12□□□□□ -0.49
SYNE1-214ENST00000454018 LMOD2Q6P5Q4 547 aa12□□□□□ -0.49
SYNE1-214ENST00000454018 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12□□□□□ -0.49
SYNE1-214ENST00000454018 KNSTRNQ9Y448 316 aa12□□□□□ -0.49
SYNE1-214ENST00000454018 USP19O94966 1318 aa12□□□□□ -0.49
SYNE1-214ENST00000454018 NWD2Q9ULI1 1742 aa11.99□□□□□ -0.49
SYNE1-214ENST00000454018 NPC1L1Q9UHC9 1359 aa11.99□□□□□ -0.49
SYNE1-214ENST00000454018 CHRM1P11229 460 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-214ENST00000454018 FAM212AQ96EL1 285 aa11.99□□□□□ -0.49
SYNE1-214ENST00000454018 RYDENQ9NUL5 291 aaKnown RBP11.99□□□□□ -0.49
SYNE1-214ENST00000454018 ABCC6O95255 1503 aa11.99□□□□□ -0.49
SYNE1-214ENST00000454018 SPATA31A6Q5VVP1 1343 aa11.99□□□□□ -0.49
SYNE1-214ENST00000454018 COL14A1Q05707 1796 aaKnown RBP11.99□□□□□ -0.49
SYNE1-214ENST00000454018 RGPD5Q99666 1765 aa11.99□□□□□ -0.49
SYNE1-214ENST00000454018 NLRP13Q86W25 1043 aa11.98□□□□□ -0.49
SYNE1-214ENST00000454018 NME9Q86XW9 330 aa11.98□□□□□ -0.49
SYNE1-214ENST00000454018 HOMEZQ8IX15 550 aa11.98□□□□□ -0.49
SYNE1-214ENST00000454018 PER1O15534 1290 aaPredicted RBP11.97□□□□□ -0.49
SYNE1-214ENST00000454018 NLRP6P59044 892 aa11.97□□□□□ -0.49
SYNE1-214ENST00000454018 DDX10Q13206 875 aaKnown RBP11.97□□□□□ -0.49
SYNE1-214ENST00000454018 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.97□□□□□ -0.49
SYNE1-214ENST00000454018 LRP6O75581 1613 aa11.97□□□□□ -0.49
SYNE1-214ENST00000454018 LMO7Q8WWI1 1683 aa11.96□□□□□ -0.49
SYNE1-214ENST00000454018 FYB1O15117 783 aa11.96□□□□□ -0.49
SYNE1-214ENST00000454018 KCNV2Q8TDN2 545 aa11.96□□□□□ -0.49
SYNE1-214ENST00000454018 COG3Q96JB2 828 aa11.96□□□□□ -0.49
SYNE1-214ENST00000454018 COL18A1P39060 1754 aa11.96□□□□□ -0.49
SYNE1-214ENST00000454018 FAM208AQ9UK61 1670 aaKnown RBP11.96□□□□□ -0.5
SYNE1-214ENST00000454018 NRAPQ86VF7 1730 aa11.95□□□□□ -0.5
SYNE1-214ENST00000454018 NUTM2GQ5VZR2 741 aa11.95□□□□□ -0.5
SYNE1-214ENST00000454018 GGNBP2Q9H3C7 697 aa11.95□□□□□ -0.5
SYNE1-214ENST00000454018 CPDO75976 1380 aa11.94□□□□□ -0.5
SYNE1-214ENST00000454018 ILDR1Q86SU0 546 aaPredicted RBP11.94□□□□□ -0.5
SYNE1-214ENST00000454018 KCNH5Q8NCM2 988 aa11.94□□□□□ -0.5
SYNE1-214ENST00000454018 PEAK1Q9H792 1746 aa11.94□□□□□ -0.5
SYNE1-214ENST00000454018 BRPF1P55201 1214 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-214ENST00000454018 AATKQ6ZMQ8 1374 aa11.92□□□□□ -0.5
SYNE1-214ENST00000454018 MNX1P50219 401 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-214ENST00000454018 RASEFQ8IZ41 740 aa11.92□□□□□ -0.5
SYNE1-214ENST00000454018 CABLES1Q8TDN4 633 aa11.92□□□□□ -0.5
SYNE1-214ENST00000454018 ZRANB1Q9UGI0 708 aa11.92□□□□□ -0.5
SYNE1-214ENST00000454018 SMG6Q86US8 1419 aaKnown RBP11.92□□□□□ -0.5
SYNE1-214ENST00000454018 GCP02774 474 aa11.91□□□□□ -0.5
SYNE1-214ENST00000454018 CREBZFQ9NS37 354 aa11.91□□□□□ -0.5
SYNE1-214ENST00000454018 RTL1A6NKG5 1358 aa11.91□□□□□ -0.5
SYNE1-214ENST00000454018 PARD3Q8TEW0 1356 aa11.91□□□□□ -0.5
SYNE1-214ENST00000454018 CC2D1BQ5T0F9 858 aaKnown RBP11.91□□□□□ -0.5
SYNE1-214ENST00000454018 WNK3Q9BYP7 1800 aa11.9□□□□□ -0.5
SYNE1-214ENST00000454018 CDK12Q9NYV4 1490 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-214ENST00000454018 KIF24Q5T7B8 1368 aa11.9□□□□□ -0.5
SYNE1-214ENST00000454018 KIAA0232Q92628 1395 aa11.9□□□□□ -0.5
SYNE1-214ENST00000454018 NUTM2BA6NNL0 878 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-214ENST00000454018 NUTM2EB1AL46 878 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-214ENST00000454018 MORC1Q86VD1 984 aa11.9□□□□□ -0.5
SYNE1-214ENST00000454018 NUTM2AQ8IVF1 878 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-214ENST00000454018 RGPD2P0DJD1 1756 aa11.9□□□□□ -0.5
SYNE1-214ENST00000454018 WDR70Q9NW82 654 aa11.89□□□□□ -0.51
SYNE1-214ENST00000454018 SLIT2O94813 1529 aa11.88□□□□□ -0.51
SYNE1-214ENST00000454018 CAMTA1Q9Y6Y1 1673 aa11.88□□□□□ -0.51
SYNE1-214ENST00000454018 SOX12O15370 315 aa11.88□□□□□ -0.51
SYNE1-214ENST00000454018 PYGBP11216 843 aa11.88□□□□□ -0.51
SYNE1-214ENST00000454018 PRDM11Q9NQV5 511 aa11.88□□□□□ -0.51
SYNE1-214ENST00000454018 BLMP54132 1417 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-214ENST00000454018 ADAMTS2O95450 1211 aa11.87□□□□□ -0.51
SYNE1-214ENST00000454018 MEX3CQ5U5Q3 659 aaKnown RBP11.87□□□□□ -0.51
SYNE1-214ENST00000454018 FLT4P35916 1363 aa11.87□□□□□ -0.51
SYNE1-214ENST00000454018 ZC3H6P61129 1189 aaKnown RBP11.86□□□□□ -0.51
SYNE1-214ENST00000454018 ARHGEF25Q86VW2 580 aa11.86□□□□□ -0.51
SYNE1-214ENST00000454018 COL5A2P05997 1499 aaPredicted RBP11.86□□□□□ -0.51
SYNE1-214ENST00000454018 MAP3K19Q56UN5 1328 aa11.86□□□□□ -0.51
SYNE1-214ENST00000454018 RALBP1Q15311 655 aa11.86□□□□□ -0.51
SYNE1-214ENST00000454018 RGPD1P0DJD0 1748 aa11.85□□□□□ -0.51
SYNE1-214ENST00000454018 TNNT2P45379 298 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-214ENST00000454018 RRS1Q15050 365 aaKnown RBP11.85□□□□□ -0.51
SYNE1-214ENST00000454018 C8orf37Q96NL8 207 aa11.85□□□□□ -0.51
SYNE1-214ENST00000454018 CNGB1Q14028 1251 aaPredicted RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms