RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 CLSPNQ9HAW4 1339 aa13.59□□□□□ -0.23
USP54-207ENST00000451492 AATKQ6ZMQ8 1374 aa13.58□□□□□ -0.23
USP54-207ENST00000451492 TMF1P82094 1093 aa13.58□□□□□ -0.24
USP54-207ENST00000451492 KCNH5Q8NCM2 988 aa13.58□□□□□ -0.24
USP54-207ENST00000451492 TOM1L2Q6ZVM7 507 aa13.57□□□□□ -0.24
USP54-207ENST00000451492 TCP11L2Q8N4U5 519 aa13.57□□□□□ -0.24
USP54-207ENST00000451492 AXIN2Q9Y2T1 843 aa13.57□□□□□ -0.24
USP54-207ENST00000451492 CSB-PGBD3P0DP91 1061 aa13.56□□□□□ -0.24
USP54-207ENST00000451492 CCDC125Q86Z20 511 aa13.56□□□□□ -0.24
USP54-207ENST00000451492 NINLQ9Y2I6 1382 aa13.56□□□□□ -0.24
USP54-207ENST00000451492 OVOS2A0A0J9YW53 1432 aa13.56□□□□□ -0.24
USP54-207ENST00000451492 OVOS2Q6IE36 1432 aa13.56□□□□□ -0.24
USP54-207ENST00000451492 RGPD2P0DJD1 1756 aa13.55□□□□□ -0.24
USP54-207ENST00000451492 SBF2Q86WG5 1849 aa13.55□□□□□ -0.24
USP54-207ENST00000451492 ARHGEF25Q86VW2 580 aa13.55□□□□□ -0.24
USP54-207ENST00000451492 POLR3GLQ9BT43 218 aa13.55□□□□□ -0.24
USP54-207ENST00000451492 USP31Q70CQ4 1352 aa13.55□□□□□ -0.24
USP54-207ENST00000451492 ABCC6O95255 1503 aa13.54□□□□□ -0.24
USP54-207ENST00000451492 PDE3BQ13370 1112 aa13.54□□□□□ -0.24
USP54-207ENST00000451492 BARGINQ6ZT62 677 aa13.54□□□□□ -0.24
USP54-207ENST00000451492 WDR17Q8IZU2 1322 aa13.54□□□□□ -0.24
USP54-207ENST00000451492 ANKRD36BQ8N2N9 1353 aa13.54□□□□□ -0.24
USP54-207ENST00000451492 PUS7Q96PZ0 661 aaKnown RBP13.53□□□□□ -0.24
USP54-207ENST00000451492 TIMELESSQ9UNS1 1208 aa13.53□□□□□ -0.24
USP54-207ENST00000451492 FAM208AQ9UK61 1670 aaKnown RBP13.53□□□□□ -0.24
USP54-207ENST00000451492 PEAK1Q9H792 1746 aa13.53□□□□□ -0.24
USP54-207ENST00000451492 BAG6P46379 1132 aa13.52□□□□□ -0.25
USP54-207ENST00000451492 THRAP3Q9Y2W1 955 aaKnown RBP13.52□□□□□ -0.25
USP54-207ENST00000451492 SLC24A1O60721 1099 aa13.51□□□□□ -0.25
USP54-207ENST00000451492 TRIM37O94972 964 aa13.51□□□□□ -0.25
USP54-207ENST00000451492 NUP188Q5SRE5 1749 aa13.5□□□□□ -0.25
USP54-207ENST00000451492 RREB1Q92766 1687 aa13.5□□□□□ -0.25
USP54-207ENST00000451492 EN1Q05925 392 aaPredicted RBP13.5□□□□□ -0.25
USP54-207ENST00000451492 COG3Q96JB2 828 aa13.5□□□□□ -0.25
USP54-207ENST00000451492 OVOS2A0A0G2JMS6 1433 aa13.49□□□□□ -0.25
USP54-207ENST00000451492 NSD3Q9BZ95 1437 aa13.49□□□□□ -0.25
USP54-207ENST00000451492 FBLN1P23142 703 aa13.49□□□□□ -0.25
USP54-207ENST00000451492 DDB1Q16531 1140 aa13.49□□□□□ -0.25
USP54-207ENST00000451492 CDCA8Q53HL2 280 aa13.49□□□□□ -0.25
USP54-207ENST00000451492 FAM196AQ6ZSG2 479 aa13.49□□□□□ -0.25
USP54-207ENST00000451492 LTV1Q96GA3 475 aaPredicted RBP13.49□□□□□ -0.25
USP54-207ENST00000451492 GGNBP2Q9H3C7 697 aa13.49□□□□□ -0.25
USP54-207ENST00000451492 ANKRD26Q9UPS8 1709 aa13.49□□□□□ -0.25
USP54-207ENST00000451492 ERBB3P21860 1342 aa13.48□□□□□ -0.25
USP54-207ENST00000451492 ANKRD24Q8TF21 1146 aa13.48□□□□□ -0.25
USP54-207ENST00000451492 NLRP2Q9NX02 1062 aa13.48□□□□□ -0.25
USP54-207ENST00000451492 HSPA5P11021 654 aaKnown RBP13.47□□□□□ -0.25
USP54-207ENST00000451492 EZH2Q15910 746 aaKnown RBP13.47□□□□□ -0.25
USP54-207ENST00000451492 DISP2A7MBM2 1401 aa13.47□□□□□ -0.25
USP54-207ENST00000451492 CCDC7Q96M83 1385 aa13.46□□□□□ -0.25
USP54-207ENST00000451492 PSDA5PKW4 1024 aaPredicted RBP13.46□□□□□ -0.25
USP54-207ENST00000451492 APBA3O96018 575 aa13.46□□□□□ -0.25
USP54-207ENST00000451492 CARD10Q9BWT7 1032 aa13.46□□□□□ -0.25
USP54-207ENST00000451492 TNS2Q63HR2 1409 aa13.46□□□□□ -0.26
USP54-207ENST00000451492 MAP2P11137 1827 aaKnown RBP13.46□□□□□ -0.26
USP54-207ENST00000451492 MAP3K19Q56UN5 1328 aa13.45□□□□□ -0.26
USP54-207ENST00000451492 KAT6BQ8WYB5 2073 aa13.45□□□□□ -0.26
USP54-207ENST00000451492 AMPHP49418 695 aa13.45□□□□□ -0.26
USP54-207ENST00000451492 EIF4G2P78344 907 aaKnown RBP eCLIP13.45□□□□□ -0.26
USP54-207ENST00000451492 RRS1Q15050 365 aaKnown RBP13.45□□□□□ -0.26
USP54-207ENST00000451492 SHANK3Q9BYB0 1731 aa13.44□□□□□ -0.26
USP54-207ENST00000451492 NHSQ6T4R5 1651 aa13.44□□□□□ -0.26
USP54-207ENST00000451492 RGPD3A6NKT7 1758 aaPredicted RBP13.44□□□□□ -0.26
USP54-207ENST00000451492 RGPD4Q7Z3J3 1758 aa13.44□□□□□ -0.26
USP54-207ENST00000451492 FYB1O15117 783 aa13.43□□□□□ -0.26
USP54-207ENST00000451492 HOXC9P31274 260 aa13.43□□□□□ -0.26
USP54-207ENST00000451492 MARCH10Q8NA82 808 aaPredicted RBP13.43□□□□□ -0.26
USP54-207ENST00000451492 DOT1LQ8TEK3 1739 aa13.43□□□□□ -0.26
USP54-207ENST00000451492 BTAF1O14981 1849 aa13.42□□□□□ -0.26
USP54-207ENST00000451492 IP6K1Q92551 441 aa13.42□□□□□ -0.26
USP54-207ENST00000451492 CDCA7Q9BWT1 371 aaPredicted RBP13.42□□□□□ -0.26
USP54-207ENST00000451492 CARD14Q9BXL6 1004 aa13.42□□□□□ -0.26
USP54-207ENST00000451492 SRCAPQ6ZRS2 3230 aa13.41□□□□□ -0.26
USP54-207ENST00000451492 EXOC5O00471 708 aa13.41□□□□□ -0.26
USP54-207ENST00000451492 IL2RBP14784 551 aa13.41□□□□□ -0.26
USP54-207ENST00000451492 RTL1A6NKG5 1358 aa13.41□□□□□ -0.26
USP54-207ENST00000451492 SMG6Q86US8 1419 aaKnown RBP13.4□□□□□ -0.26
USP54-207ENST00000451492 R3HDM1Q15032 1099 aaKnown RBP13.4□□□□□ -0.26
USP54-207ENST00000451492 PTF1AQ7RTS3 328 aa13.4□□□□□ -0.26
USP54-207ENST00000451492 CAMKK2Q96RR4 588 aa13.4□□□□□ -0.26
USP54-207ENST00000451492 LRP5O75197 1615 aa13.39□□□□□ -0.27
USP54-207ENST00000451492 USHBP1Q8N6Y0 703 aa13.39□□□□□ -0.27
USP54-207ENST00000451492 ACSBG1Q96GR2 724 aa13.39□□□□□ -0.27
USP54-207ENST00000451492 PPM1GO15355 546 aaPredicted RBP13.38□□□□□ -0.27
USP54-207ENST00000451492 EMILIN1Q9Y6C2 1016 aa13.38□□□□□ -0.27
USP54-207ENST00000451492 MEGF6O75095 1541 aa13.38□□□□□ -0.27
USP54-207ENST00000451492 FLT4P35916 1363 aa13.37□□□□□ -0.27
USP54-207ENST00000451492 PARD3Q8TEW0 1356 aa13.37□□□□□ -0.27
USP54-207ENST00000451492 TNNT2P45379 298 aaPredicted RBP13.37□□□□□ -0.27
USP54-207ENST00000451492 CGNL1Q0VF96 1302 aa13.37□□□□□ -0.27
USP54-207ENST00000451492 C11orf95C9JLR9 678 aaPredicted RBP13.36□□□□□ -0.27
USP54-207ENST00000451492 HSP90AB2PQ58FF8 381 aa13.36□□□□□ -0.27
USP54-207ENST00000451492 KCNQ2O43526 872 aa13.35□□□□□ -0.27
USP54-207ENST00000451492 DDX54Q8TDD1 881 aaKnown RBP13.35□□□□□ -0.27
USP54-207ENST00000451492 NBPF6Q5VWK0 638 aa13.34□□□□□ -0.27
USP54-207ENST00000451492 NBPF4Q96M43 638 aa13.34□□□□□ -0.27
USP54-207ENST00000451492 BCL11BQ9C0K0 894 aaPredicted RBP13.34□□□□□ -0.27
USP54-207ENST00000451492 PANK3Q9H999 370 aa13.34□□□□□ -0.27
USP54-207ENST00000451492 INSRP06213 1382 aa13.33□□□□□ -0.27
USP54-207ENST00000451492 PKD1L3Q7Z443 1732 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms