RNA–Protein interactions for RNA: ENST00000448940.5

CDC42BPA-209, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 7,355 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-209ENST00000448940 PLCD3Q8N3E9 789 aa7.08□□□□□ -1.28
CDC42BPA-209ENST00000448940 FLAD1Q8NFF5 587 aa7.08□□□□□ -1.28
CDC42BPA-209ENST00000448940 NPATQ14207 1427 aa7.08□□□□□ -1.28
CDC42BPA-209ENST00000448940 ABCA8O94911 1581 aa7.08□□□□□ -1.28
CDC42BPA-209ENST00000448940 MARCH6O60337 910 aa7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 AIMP1Q12904 312 aaKnown RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 CTTNBP2Q8WZ74 1663 aa7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 EIF5BO60841 1220 aaKnown RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 HSP90AA1P07900 732 aaKnown RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 RRS1Q15050 365 aaKnown RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 AMER1Q5JTC6 1135 aaPredicted RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 RTCBQ9Y3I0 505 aaKnown RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 CCNL1Q9UK58 526 aaPredicted RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 ARAP3Q8WWN8 1544 aa7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 C6orf229H3BNL8 230 aa7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 MYCP01106 439 aaPredicted RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 CCDC27Q2M243 656 aa7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 WWC2Q6AWC2 1192 aa7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 TEX13AQ9BXU3 409 aaPredicted RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 C9orf78Q9NZ63 289 aaPredicted RBP7.07□□□□□ -1.28
CDC42BPA-209ENST00000448940 ADRA2BP18089 450 aa7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 SLC4A8Q2Y0W8 1093 aa7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 A2ML1A8K2U0 1454 aa7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 ANKIB1Q9P2G1 1089 aa7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 ZCCHC11Q5TAX3 1644 aaKnown RBP7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 EN1Q05925 392 aaPredicted RBP7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 DHX16O60231 1041 aaKnown RBP7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 NME9Q86XW9 330 aa7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 NUTM1Q86Y26 1132 aa7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 SKIV2LQ15477 1246 aaKnown RBP7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 PPM1FP49593 454 aaPredicted RBP7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 OGFOD1Q8N543 542 aa7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.06□□□□□ -1.28
CDC42BPA-209ENST00000448940 NECTIN2Q92692 538 aa7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 ITSN2Q9NZM3 1697 aa7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 PIK3R4Q99570 1358 aa7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 PLEKHG1Q9ULL1 1385 aa7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 ELL2O00472 640 aaPredicted RBP7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 ATP6V1AP38606 617 aa7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 KDM2BQ8NHM5 1336 aa7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 ATP2B2Q01814 1243 aa7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 BRINP3Q76B58 766 aa7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 TRPM2O94759 1503 aa7.05□□□□□ -1.28
CDC42BPA-209ENST00000448940 FYB1O15117 783 aa7.04□□□□□ -1.28
CDC42BPA-209ENST00000448940 TMEM106CQ9BVX2 250 aa7.04□□□□□ -1.28
CDC42BPA-209ENST00000448940 H0YIN7 160 aa7.04□□□□□ -1.28
CDC42BPA-209ENST00000448940 CCDC125Q86Z20 511 aa7.04□□□□□ -1.28
CDC42BPA-209ENST00000448940 USHBP1Q8N6Y0 703 aa7.04□□□□□ -1.28
CDC42BPA-209ENST00000448940 TTC21BQ7Z4L5 1316 aa7.04□□□□□ -1.28
CDC42BPA-209ENST00000448940 RIPK4P57078 832 aa7.03□□□□□ -1.28
CDC42BPA-209ENST00000448940 PTPN23Q9H3S7 1636 aa7.03□□□□□ -1.28
CDC42BPA-209ENST00000448940 TRAPPC3LQ5T215 181 aa7.03□□□□□ -1.28
CDC42BPA-209ENST00000448940 MPHOSPH10O00566 681 aaKnown RBP7.03□□□□□ -1.28
CDC42BPA-209ENST00000448940 MAP3K1Q13233 1512 aa7.03□□□□□ -1.28
CDC42BPA-209ENST00000448940 EFCAB6Q5THR3 1501 aa7.03□□□□□ -1.28
CDC42BPA-209ENST00000448940 SMC4Q9NTJ3 1288 aa7.03□□□□□ -1.28
CDC42BPA-209ENST00000448940 FKBP5Q13451 457 aaPredicted RBP7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 GJD4Q96KN9 370 aaPredicted RBP7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 GNPATO15228 680 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 TMEM132AQ24JP5 1023 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 OTUD7BQ6GQQ9 843 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 TNS4Q8IZW8 715 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 SETDB2Q96T68 719 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 UPF2Q9HAU5 1272 aaKnown RBP7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 H7C1D1 291 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 HECW2Q9P2P5 1572 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 NAIPQ13075 1403 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 PRKAR2BP31323 418 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 GNAI1P63096 354 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 MPHOSPH8Q99549 860 aa7.02□□□□□ -1.29
CDC42BPA-209ENST00000448940 KDM5DQ9BY66 1539 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 BTBD11A6QL63 1104 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 NBPF6Q5VWK0 638 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 NBPF5PQ86XG9 351 aaPredicted RBP7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 NBPF4Q96M43 638 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 HMMRO75330 724 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 HSP90AB3PQ58FF7 597 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 CCDC146Q8IYE0 955 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 CCDC43Q96MW1 224 aaKnown RBP7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 ADCY10Q96PN6 1610 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 CASC1Q6TDU7 716 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 DIP2BQ9P265 1576 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 GPATCH3Q96I76 525 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 CFAP43Q8NDM7 1665 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 FMNL2Q96PY5 1086 aa7.01□□□□□ -1.29
CDC42BPA-209ENST00000448940 FAM182BQ5T319 152 aa7□□□□□ -1.29
CDC42BPA-209ENST00000448940 SHANK2Q9UPX8 1470 aa7□□□□□ -1.29
CDC42BPA-209ENST00000448940 PZPP20742 1482 aa7□□□□□ -1.29
CDC42BPA-209ENST00000448940 GNL3LQ9NVN8 582 aaKnown RBP6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 SIRT1Q96EB6 747 aa6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 YTHDC2Q9H6S0 1430 aaKnown RBP6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 R3HCC1Q9Y3T6 440 aaKnown RBP6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 PCDH11XQ9BZA7 1347 aa6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 PCDH11YQ9BZA8 1340 aa6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 GNAT3A8MTJ3 354 aa6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 HDGFL1Q5TGJ6 251 aa6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 SAMD9Q5K651 1589 aa6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 PTPRTO14522 1441 aa6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 MYL6BP14649 208 aa6.99□□□□□ -1.29
CDC42BPA-209ENST00000448940 CNNM1Q9NRU3 951 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms