RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 PLEKHM2Q8IWE5 1019 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 TSC1Q92574 1164 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 ZKSCAN5Q9Y2L8 839 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 NUTM2FA1L443 756 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 CHAF1AQ13111 956 aaPredicted RBP11.03□□□□□ -0.64
COPB1-202ENST00000439561 TTC22Q5TAA0 569 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 MBIPQ9NS73 344 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 MYO5CQ9NQX4 1742 aa11.02□□□□□ -0.64
COPB1-202ENST00000439561 HMMRO75330 724 aa11.02□□□□□ -0.64
COPB1-202ENST00000439561 VAMP4O75379 141 aa11.02□□□□□ -0.64
COPB1-202ENST00000439561 MBD3O95983 291 aa11.02□□□□□ -0.64
COPB1-202ENST00000439561 MRPL50Q8N5N7 158 aaKnown RBP11.02□□□□□ -0.64
COPB1-202ENST00000439561 C8orf58Q8NAV2 365 aa11.02□□□□□ -0.64
COPB1-202ENST00000439561 ERC2O15083 957 aa11.02□□□□□ -0.65
COPB1-202ENST00000439561 FCHSD2O94868 740 aa11.02□□□□□ -0.65
COPB1-202ENST00000439561 NFE2L2Q16236 605 aa11.02□□□□□ -0.65
COPB1-202ENST00000439561 TMEM63CQ9P1W3 806 aa11.02□□□□□ -0.65
COPB1-202ENST00000439561 USP25Q9UHP3 1055 aa11.02□□□□□ -0.65
COPB1-202ENST00000439561 NOL7Q9UMY1 257 aaKnown RBP11.02□□□□□ -0.65
COPB1-202ENST00000439561 EMILIN1Q9Y6C2 1016 aa11.02□□□□□ -0.65
COPB1-202ENST00000439561 KRT24Q2M2I5 525 aa11.02□□□□□ -0.65
COPB1-202ENST00000439561 LARP6Q9BRS8 491 aaKnown RBP11.02□□□□□ -0.65
COPB1-202ENST00000439561 PHF14O94880 888 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 RRS1Q15050 365 aaKnown RBP11.01□□□□□ -0.65
COPB1-202ENST00000439561 LRSAM1Q6UWE0 723 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 DRC7Q8IY82 874 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 EXOC6BQ9Y2D4 811 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 ZNF518AQ6AHZ1 1483 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 RTEL1-TNFRSF6BF6WH68 1400 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 PLCH2O75038 1416 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 ZNF445P59923 1031 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 CBX1P83916 185 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 SASS6Q6UVJ0 657 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 GPT2Q8TD30 523 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 USP26Q9BXU7 913 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 ANKRD36BQ8N2N9 1353 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 TTC37Q6PGP7 1564 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 PPIP5K1Q6PFW1 1433 aa11.01□□□□□ -0.65
COPB1-202ENST00000439561 DTNBO60941 627 aa11□□□□□ -0.65
COPB1-202ENST00000439561 LMOD3Q0VAK6 560 aa11□□□□□ -0.65
COPB1-202ENST00000439561 SIRT2Q8IXJ6 389 aa11□□□□□ -0.65
COPB1-202ENST00000439561 C17orf53Q8N3J3 647 aaPredicted RBP11□□□□□ -0.65
COPB1-202ENST00000439561 PLEKHF1Q96S99 279 aa11□□□□□ -0.65
COPB1-202ENST00000439561 MADDQ8WXG6 1647 aa11□□□□□ -0.65
COPB1-202ENST00000439561 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11□□□□□ -0.654e-7■■■■□ 24.7
COPB1-202ENST00000439561 FIBPO43427 364 aa11□□□□□ -0.65
COPB1-202ENST00000439561 DDIT3P35638 169 aa11□□□□□ -0.65
COPB1-202ENST00000439561 SPC24Q8NBT2 197 aa11□□□□□ -0.65
COPB1-202ENST00000439561 IL16Q14005 1332 aa11□□□□□ -0.65
COPB1-202ENST00000439561 CDK19Q9BWU1 502 aa11□□□□□ -0.65
COPB1-202ENST00000439561 MIS18AQ9NYP9 233 aa11□□□□□ -0.65
COPB1-202ENST00000439561 NSFL1CQ9UNZ2 370 aaKnown RBP11□□□□□ -0.65
COPB1-202ENST00000439561 A0A1W2PP64 1363 aa11□□□□□ -0.65
COPB1-202ENST00000439561 LAMC1P11047 1609 aa10.99□□□□□ -0.65
COPB1-202ENST00000439561 TTC12Q9H892 705 aaPredicted RBP10.99□□□□□ -0.65
COPB1-202ENST00000439561 MAP4K4O95819 1239 aaPredicted RBP10.99□□□□□ -0.65
COPB1-202ENST00000439561 TMX3Q96JJ7 454 aa10.99□□□□□ -0.65
COPB1-202ENST00000439561 IQGAP3Q86VI3 1631 aa10.99□□□□□ -0.65
COPB1-202ENST00000439561 PLEKHG5O94827 1062 aa10.99□□□□□ -0.65
COPB1-202ENST00000439561 UNC13BO14795 1591 aa10.99□□□□□ -0.65
COPB1-202ENST00000439561 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.98□□□□□ -0.65
COPB1-202ENST00000439561 F6X3S4 739 aa10.98□□□□□ -0.65
COPB1-202ENST00000439561 SLC4A2P04920 1241 aa10.98□□□□□ -0.65
COPB1-202ENST00000439561 JARID2Q92833 1246 aaPredicted RBP10.98□□□□□ -0.65
COPB1-202ENST00000439561 MEIS3Q99687 375 aa10.98□□□□□ -0.65
COPB1-202ENST00000439561 PREX2Q70Z35 1606 aa10.98□□□□□ -0.65
COPB1-202ENST00000439561 MTERF4Q7Z6M4 381 aaKnown RBP10.98□□□□□ -0.65
COPB1-202ENST00000439561 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.98□□□□□ -0.652e-6■■□□□ 11.6
COPB1-202ENST00000439561 CDC42BPBQ9Y5S2 1711 aa10.98□□□□□ -0.65
COPB1-202ENST00000439561 DYNC1I1O14576 645 aa10.97□□□□□ -0.65
COPB1-202ENST00000439561 MCM10Q7L590 875 aa10.97□□□□□ -0.65
COPB1-202ENST00000439561 ZNF428Q96B54 188 aa10.97□□□□□ -0.65
COPB1-202ENST00000439561 CD109Q6YHK3 1445 aa10.97□□□□□ -0.65
COPB1-202ENST00000439561 KCNJ4P48050 445 aa10.97□□□□□ -0.65
COPB1-202ENST00000439561 OS9Q13438 667 aaPredicted RBP10.97□□□□□ -0.65
COPB1-202ENST00000439561 RTF1Q92541 710 aaKnown RBP10.97□□□□□ -0.65
COPB1-202ENST00000439561 PODXL2Q9NZ53 605 aa10.97□□□□□ -0.65
COPB1-202ENST00000439561 CFAP65Q6ZU64 1925 aaKnown RBP10.97□□□□□ -0.65
COPB1-202ENST00000439561 HCLS1P14317 486 aaPredicted RBP10.97□□□□□ -0.65
COPB1-202ENST00000439561 GOLGA6L4A6NEF3 574 aa10.96□□□□□ -0.65
COPB1-202ENST00000439561 SPDYE4A6NLX3 237 aa10.96□□□□□ -0.65
COPB1-202ENST00000439561 HAP1P54257 671 aaPredicted RBP10.96□□□□□ -0.65
COPB1-202ENST00000439561 COG3Q96JB2 828 aa10.96□□□□□ -0.65
COPB1-202ENST00000439561 DCTPP1Q9H773 170 aa10.96□□□□□ -0.65
COPB1-202ENST00000439561 IFT57Q9NWB7 429 aa10.96□□□□□ -0.65
COPB1-202ENST00000439561 VPS37CA5D8V6 355 aaPredicted RBP10.96□□□□□ -0.66
COPB1-202ENST00000439561 HS1BP3Q53T59 392 aa10.96□□□□□ -0.66
COPB1-202ENST00000439561 SULT6B1Q6IMI4 303 aa10.96□□□□□ -0.66
COPB1-202ENST00000439561 STK31Q9BXU1 1019 aa10.96□□□□□ -0.66
COPB1-202ENST00000439561 ZRANB1Q9UGI0 708 aa10.96□□□□□ -0.66
COPB1-202ENST00000439561 NSD2O96028 1365 aa10.96□□□□□ -0.66
COPB1-202ENST00000439561 WAPLQ7Z5K2 1190 aa10.96□□□□□ -0.66
COPB1-202ENST00000439561 NME9Q86XW9 330 aa10.96□□□□□ -0.66
COPB1-202ENST00000439561 IL1RAPL2Q9NP60 686 aa10.96□□□□□ -0.66
COPB1-202ENST00000439561 CLTCL1P53675 1640 aa10.96□□□□□ -0.66
COPB1-202ENST00000439561 TRPM2O94759 1503 aa10.95□□□□□ -0.66
COPB1-202ENST00000439561 IGSF3O75054 1194 aa10.95□□□□□ -0.66
COPB1-202ENST00000439561 RPAP2Q8IXW5 612 aaPredicted RBP10.95□□□□□ -0.66
COPB1-202ENST00000439561 PLXNC1O60486 1568 aa10.95□□□□□ -0.66
COPB1-202ENST00000439561 NCOA3Q9Y6Q9 1424 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms