RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 SETD1AO15047 1707 aaKnown RBP14.17□□□□□ -0.14
USP4-205ENST00000431357 ZNF853P0CG23 659 aa14.17□□□□□ -0.14
USP4-205ENST00000431357 BMP2KLQ5H9B9 411 aa14.17□□□□□ -0.14
USP4-205ENST00000431357 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.17□□□□□ -0.14
USP4-205ENST00000431357 SNX21Q969T3 373 aa14.17□□□□□ -0.14
USP4-205ENST00000431357 SIRT1Q96EB6 747 aa14.17□□□□□ -0.14
USP4-205ENST00000431357 WASLO00401 505 aaPredicted RBP14.17□□□□□ -0.14
USP4-205ENST00000431357 MCM4P33991 863 aa14.17□□□□□ -0.14
USP4-205ENST00000431357 WAPLQ7Z5K2 1190 aa14.17□□□□□ -0.14
USP4-205ENST00000431357 RIMBP3CA6NJZ7 1639 aa14.17□□□□□ -0.14
USP4-205ENST00000431357 RIMBP3BA6NNM3 1639 aa14.17□□□□□ -0.14
USP4-205ENST00000431357 RIMBP3Q9UFD9 1639 aa14.17□□□□□ -0.14
USP4-205ENST00000431357 PHACTR3Q96KR7 559 aa14.16□□□□□ -0.14
USP4-205ENST00000431357 MAP2P11137 1827 aaKnown RBP14.16□□□□□ -0.14
USP4-205ENST00000431357 LNPKQ9C0E8 428 aa14.15□□□□□ -0.14
USP4-205ENST00000431357 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.15□□□□□ -0.14
USP4-205ENST00000431357 KIF24Q5T7B8 1368 aa14.15□□□□□ -0.14
USP4-205ENST00000431357 HMOX1P09601 288 aa14.15□□□□□ -0.14
USP4-205ENST00000431357 API5Q9BZZ5 524 aaKnown RBP14.15□□□□□ -0.14
USP4-205ENST00000431357 ABCC4O15439 1325 aa14.15□□□□□ -0.15
USP4-205ENST00000431357 CFAP44Q96MT7 982 aa14.14□□□□□ -0.15
USP4-205ENST00000431357 FAM43AQ8N2R8 423 aa14.14□□□□□ -0.15
USP4-205ENST00000431357 COG3Q96JB2 828 aa14.14□□□□□ -0.15
USP4-205ENST00000431357 EMILIN1Q9Y6C2 1016 aa14.14□□□□□ -0.15
USP4-205ENST00000431357 NCOA3Q9Y6Q9 1424 aa14.14□□□□□ -0.15
USP4-205ENST00000431357 HAP1P54257 671 aaPredicted RBP14.13□□□□□ -0.15
USP4-205ENST00000431357 MBIPQ9NS73 344 aa14.13□□□□□ -0.15
USP4-205ENST00000431357 HDGFP51858 240 aaKnown RBP14.12□□□□□ -0.15
USP4-205ENST00000431357 TWISTNBQ3B726 338 aaPredicted RBP14.12□□□□□ -0.15
USP4-205ENST00000431357 ANKRD45Q5TZF3 282 aa14.12□□□□□ -0.15
USP4-205ENST00000431357 ZNF692Q9BU19 519 aaPredicted RBP14.12□□□□□ -0.15
USP4-205ENST00000431357 NME9Q86XW9 330 aa14.12□□□□□ -0.15
USP4-205ENST00000431357 CIZ1Q9ULV3 898 aaPredicted RBP14.12□□□□□ -0.15
USP4-205ENST00000431357 CCDC61Q9Y6R9 512 aa14.12□□□□□ -0.15
USP4-205ENST00000431357 KNDC1Q76NI1 1749 aa14.12□□□□□ -0.15
USP4-205ENST00000431357 DDX11L8A8MPP1 907 aa14.11□□□□□ -0.15
USP4-205ENST00000431357 FBLN1P23142 703 aa14.11□□□□□ -0.15
USP4-205ENST00000431357 TSPYL6Q8N831 410 aa14.11□□□□□ -0.15
USP4-205ENST00000431357 NUDT16Q96DE0 195 aaKnown RBP14.11□□□□□ -0.15
USP4-205ENST00000431357 TECPR2O15040 1411 aa14.11□□□□□ -0.15
USP4-205ENST00000431357 MON2Q7Z3U7 1717 aa14.11□□□□□ -0.15
USP4-205ENST00000431357 FAM69CQ0P6D2 419 aa14.11□□□□□ -0.15
USP4-205ENST00000431357 SPRYD3Q8NCJ5 442 aa14.11□□□□□ -0.15
USP4-205ENST00000431357 THUMPD2Q9BTF0 503 aaKnown RBP14.11□□□□□ -0.15
USP4-205ENST00000431357 NRXN3Q9Y4C0 1643 aa14.1□□□□□ -0.15
USP4-205ENST00000431357 DIP2BQ9P265 1576 aa14.1□□□□□ -0.15
USP4-205ENST00000431357 DDIT3P35638 169 aa14.09□□□□□ -0.15
USP4-205ENST00000431357 GOLGA6L3A6NEY3 463 aa14.09□□□□□ -0.15
USP4-205ENST00000431357 PLEKHG5O94827 1062 aa14.09□□□□□ -0.15
USP4-205ENST00000431357 PTMSP20962 102 aa14.09□□□□□ -0.15
USP4-205ENST00000431357 FSD2A1L4K1 749 aa14.08□□□□□ -0.16
USP4-205ENST00000431357 TRAK2O60296 914 aa14.08□□□□□ -0.16
USP4-205ENST00000431357 METP08581 1390 aa14.08□□□□□ -0.16
USP4-205ENST00000431357 CPS1P31327 1500 aa14.08□□□□□ -0.16
USP4-205ENST00000431357 AKAP12Q02952 1782 aa14.08□□□□□ -0.16
USP4-205ENST00000431357 C8orf58Q8NAV2 365 aa14.08□□□□□ -0.16
USP4-205ENST00000431357 ISY1Q9ULR0 285 aaKnown RBP14.08□□□□□ -0.16
USP4-205ENST00000431357 C3P01024 1663 aa14.07□□□□□ -0.16
USP4-205ENST00000431357 HSP90AB1P08238 724 aaKnown RBP14.07□□□□□ -0.16
USP4-205ENST00000431357 SIRT2Q8IXJ6 389 aa14.07□□□□□ -0.16
USP4-205ENST00000431357 C1orf115Q9H7X2 142 aa14.07□□□□□ -0.16
USP4-205ENST00000431357 DLG5Q8TDM6 1919 aa14.06□□□□□ -0.16
USP4-205ENST00000431357 ELL2O00472 640 aaPredicted RBP14.06□□□□□ -0.16
USP4-205ENST00000431357 CDC45O75419 566 aa14.06□□□□□ -0.16
USP4-205ENST00000431357 TXNDC2Q86VQ3 553 aa14.06□□□□□ -0.16
USP4-205ENST00000431357 ZRANB1Q9UGI0 708 aa14.06□□□□□ -0.16
USP4-205ENST00000431357 ITSN1Q15811 1721 aa14.06□□□□□ -0.16
USP4-205ENST00000431357 NRKQ7Z2Y5 1582 aa14.06□□□□□ -0.16
USP4-205ENST00000431357 INTS3Q68E01 1043 aaKnown RBP14.06□□□□□ -0.16
USP4-205ENST00000431357 CYB5RLQ6IPT4 315 aa14.06□□□□□ -0.16
USP4-205ENST00000431357 TBC1D9Q6ZT07 1266 aa14.06□□□□□ -0.16
USP4-205ENST00000431357 GBP4Q96PP9 640 aa14.05□□□□□ -0.16
USP4-205ENST00000431357 DCTPP1Q9H773 170 aa14.05□□□□□ -0.16
USP4-205ENST00000431357 RRS1Q15050 365 aaKnown RBP14.05□□□□□ -0.16
USP4-205ENST00000431357 KIAA0232Q92628 1395 aa14.04□□□□□ -0.16
USP4-205ENST00000431357 RPAP2Q8IXW5 612 aaPredicted RBP14.04□□□□□ -0.16
USP4-205ENST00000431357 KIF2CQ99661 725 aa14.04□□□□□ -0.16
USP4-205ENST00000431357 SKOR2Q2VWA4 1001 aaPredicted RBP14.03□□□□□ -0.16
USP4-205ENST00000431357 ESF1Q9H501 851 aaKnown RBP14.03□□□□□ -0.16
USP4-205ENST00000431357 K7ELQ4 463 aaPredicted RBP14.03□□□□□ -0.16
USP4-205ENST00000431357 MRE11P49959 708 aa14.03□□□□□ -0.16
USP4-205ENST00000431357 RAB3GAP1Q15042 981 aa14.03□□□□□ -0.16
USP4-205ENST00000431357 PTPRCP08575 1304 aa14.02□□□□□ -0.16
USP4-205ENST00000431357 CHL1O00533 1208 aa14.02□□□□□ -0.16
USP4-205ENST00000431357 XRCC6P12956 609 aaKnown RBP eCLIP14.02□□□□□ -0.16
USP4-205ENST00000431357 ANKRD44Q8N8A2 993 aa14.02□□□□□ -0.16
USP4-205ENST00000431357 FAM83GA6ND36 823 aa14.02□□□□□ -0.17
USP4-205ENST00000431357 MLECQ14165 292 aa14.02□□□□□ -0.17
USP4-205ENST00000431357 EIF4A2Q14240 407 aaKnown RBP14.02□□□□□ -0.17
USP4-205ENST00000431357 PLEKHM2Q8IWE5 1019 aa14.02□□□□□ -0.17
USP4-205ENST00000431357 TTC21BQ7Z4L5 1316 aa14.01□□□□□ -0.17
USP4-205ENST00000431357 TNPO1Q92973 898 aaKnown RBP14.01□□□□□ -0.17
USP4-205ENST00000431357 PRR36Q9H6K5 1346 aa14.01□□□□□ -0.17
USP4-205ENST00000431357 PLEKHG3A1L390 1219 aa14□□□□□ -0.17
USP4-205ENST00000431357 HSP90AA1P07900 732 aaKnown RBP14□□□□□ -0.17
USP4-205ENST00000431357 SULT6B1Q6IMI4 303 aa14□□□□□ -0.17
USP4-205ENST00000431357 TSPOAP1O95153 1857 aa14□□□□□ -0.17
USP4-205ENST00000431357 DCTN1Q14203 1278 aa14□□□□□ -0.17
USP4-205ENST00000431357 TTC22Q5TAA0 569 aa14□□□□□ -0.17
USP4-205ENST00000431357 GZF1Q9H116 711 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms