RNA–Protein interactions for RNA: ENST00000428962.2

THBS3-202, Transcript of thrombospondin 3, humanhuman

TSL 2

Gene THBS3, Length 1,833 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-202ENST00000428962 STRCQ7RTU9 1775 aa17.48■□□□□ 0.39
THBS3-202ENST00000428962 ZNF142P52746 1687 aaPredicted RBP17.48■□□□□ 0.39
THBS3-202ENST00000428962 PLEKHG3A1L390 1219 aa17.48■□□□□ 0.39
THBS3-202ENST00000428962 SSH1Q8WYL5 1049 aa17.48■□□□□ 0.39
THBS3-202ENST00000428962 DDX19BQ9UMR2 479 aa17.48■□□□□ 0.39
THBS3-202ENST00000428962 TNNQ9UQP3 1299 aa17.48■□□□□ 0.39
THBS3-202ENST00000428962 NCKAP5LQ9HCH0 1330 aa17.48■□□□□ 0.39
THBS3-202ENST00000428962 FBLN1P23142 703 aa17.47■□□□□ 0.39
THBS3-202ENST00000428962 ATF7IPQ6VMQ6 1270 aa17.47■□□□□ 0.39
THBS3-202ENST00000428962 HMOX1P09601 288 aa17.47■□□□□ 0.39
THBS3-202ENST00000428962 ILDR1Q86SU0 546 aaPredicted RBP17.47■□□□□ 0.39
THBS3-202ENST00000428962 ZRANB1Q9UGI0 708 aa17.47■□□□□ 0.39
THBS3-202ENST00000428962 USP6P35125 1406 aa17.47■□□□□ 0.39
THBS3-202ENST00000428962 NALCNQ8IZF0 1738 aa17.46■□□□□ 0.39
THBS3-202ENST00000428962 OVOS2A0A0J9YW53 1432 aa17.46■□□□□ 0.39
THBS3-202ENST00000428962 TRIM27P14373 513 aa17.46■□□□□ 0.39
THBS3-202ENST00000428962 OVOS2Q6IE36 1432 aa17.46■□□□□ 0.39
THBS3-202ENST00000428962 TTC21BQ7Z4L5 1316 aa17.46■□□□□ 0.39
THBS3-202ENST00000428962 PTPRUQ92729 1446 aa17.46■□□□□ 0.39
THBS3-202ENST00000428962 TBX22Q9Y458 520 aa17.46■□□□□ 0.39
THBS3-202ENST00000428962 PCDHB15Q9Y5E8 787 aa17.46■□□□□ 0.39
THBS3-202ENST00000428962 ACEP12821 1306 aa17.45■□□□□ 0.38
THBS3-202ENST00000428962 GNAI1P63096 354 aa17.45■□□□□ 0.38
THBS3-202ENST00000428962 IFT57Q9NWB7 429 aa17.45■□□□□ 0.38
THBS3-202ENST00000428962 THEMISQ8N1K5 641 aaPredicted RBP17.44■□□□□ 0.38
THBS3-202ENST00000428962 BRPF1P55201 1214 aaPredicted RBP17.44■□□□□ 0.38
THBS3-202ENST00000428962 RRS1Q15050 365 aaKnown RBP17.44■□□□□ 0.38
THBS3-202ENST00000428962 PHACTR3Q96KR7 559 aa17.44■□□□□ 0.38
THBS3-202ENST00000428962 NOB1Q9ULX3 412 aaKnown RBP17.43■□□□□ 0.38
THBS3-202ENST00000428962 ITPRIPQ8IWB1 547 aa17.42■□□□□ 0.38
THBS3-202ENST00000428962 SLC26A8Q96RN1 970 aa17.42■□□□□ 0.38
THBS3-202ENST00000428962 TTC21AQ8NDW8 1320 aa17.42■□□□□ 0.38
THBS3-202ENST00000428962 AMOTL2Q9Y2J4 779 aa17.42■□□□□ 0.38
THBS3-202ENST00000428962 USP31Q70CQ4 1352 aa17.41■□□□□ 0.38
THBS3-202ENST00000428962 XRN1Q8IZH2 1706 aaKnown RBP17.41■□□□□ 0.38
THBS3-202ENST00000428962 CERKQ8TCT0 537 aa17.41■□□□□ 0.38
THBS3-202ENST00000428962 FBXO41Q8TF61 875 aa17.41■□□□□ 0.38
THBS3-202ENST00000428962 CHMP4BQ9H444 224 aaKnown RBP17.41■□□□□ 0.38
THBS3-202ENST00000428962 LAS1LQ9Y4W2 734 aaKnown RBP17.41■□□□□ 0.38
THBS3-202ENST00000428962 DLG5Q8TDM6 1919 aa17.41■□□□□ 0.38
THBS3-202ENST00000428962 HDAC1Q13547 482 aaPredicted RBP17.4■□□□□ 0.38
THBS3-202ENST00000428962 DAXXQ9UER7 740 aaPredicted RBP17.4■□□□□ 0.38
THBS3-202ENST00000428962 SSH2Q76I76 1423 aa17.4■□□□□ 0.38
THBS3-202ENST00000428962 PDZRN3Q9UPQ7 1066 aa17.4■□□□□ 0.38
THBS3-202ENST00000428962 ZNF853P0CG23 659 aa17.39■□□□□ 0.37
THBS3-202ENST00000428962 RTL5Q5HYW3 569 aaPredicted RBP17.39■□□□□ 0.37
THBS3-202ENST00000428962 ANKLE2Q86XL3 938 aa17.39■□□□□ 0.37
THBS3-202ENST00000428962 BCL11AQ9H165 835 aa17.39■□□□□ 0.37
THBS3-202ENST00000428962 NBR1Q14596 966 aa17.38■□□□□ 0.37
THBS3-202ENST00000428962 ARHGAP45Q92619 1136 aa17.38■□□□□ 0.37
THBS3-202ENST00000428962 CFAP44Q96MT7 982 aa17.38■□□□□ 0.37
THBS3-202ENST00000428962 ANKARQ7Z5J8 1434 aa17.38■□□□□ 0.37
THBS3-202ENST00000428962 EIF4A2Q14240 407 aaKnown RBP17.37■□□□□ 0.37
THBS3-202ENST00000428962 TMEM57Q8N5G2 664 aa17.37■□□□□ 0.37
THBS3-202ENST00000428962 PIK3R4Q99570 1358 aa17.37■□□□□ 0.37
THBS3-202ENST00000428962 RGPD1P0DJD0 1748 aa17.37■□□□□ 0.37
THBS3-202ENST00000428962 VAMP4O75379 141 aa17.36■□□□□ 0.37
THBS3-202ENST00000428962 THUMPD2Q9BTF0 503 aaKnown RBP17.36■□□□□ 0.37
THBS3-202ENST00000428962 MBIPQ9NS73 344 aa17.36■□□□□ 0.37
THBS3-202ENST00000428962 PEAK1Q9H792 1746 aa17.36■□□□□ 0.37
THBS3-202ENST00000428962 FMN2Q9NZ56 1722 aa17.36■□□□□ 0.37
THBS3-202ENST00000428962 NUTM2FA1L443 756 aa17.35■□□□□ 0.37
THBS3-202ENST00000428962 HAP1P54257 671 aaPredicted RBP17.35■□□□□ 0.37
THBS3-202ENST00000428962 ZBTB40Q9NUA8 1239 aa17.35■□□□□ 0.37
THBS3-202ENST00000428962 ARHGEF10O15013 1369 aa17.34■□□□□ 0.37
THBS3-202ENST00000428962 MRPL50Q8N5N7 158 aaKnown RBP17.34■□□□□ 0.37
THBS3-202ENST00000428962 TWISTNBQ3B726 338 aaPredicted RBP17.33■□□□□ 0.37
THBS3-202ENST00000428962 SULT6B1Q6IMI4 303 aa17.33■□□□□ 0.37
THBS3-202ENST00000428962 UPF2Q9HAU5 1272 aaKnown RBP17.33■□□□□ 0.37
THBS3-202ENST00000428962 NGDNQ8NEJ9 315 aaKnown RBP17.33■□□□□ 0.36
THBS3-202ENST00000428962 SBNO1A3KN83 1393 aa17.32■□□□□ 0.36
THBS3-202ENST00000428962 FLT4P35916 1363 aa17.32■□□□□ 0.36
THBS3-202ENST00000428962 USP35Q9P2H5 1018 aa17.32■□□□□ 0.36
THBS3-202ENST00000428962 SMC5Q8IY18 1101 aa17.31■□□□□ 0.36
THBS3-202ENST00000428962 API5Q9BZZ5 524 aaKnown RBP17.31■□□□□ 0.36
THBS3-202ENST00000428962 PIK3C2AO00443 1686 aa17.3■□□□□ 0.36
THBS3-202ENST00000428962 ZNF335Q9H4Z2 1342 aaPredicted RBP17.3■□□□□ 0.36
THBS3-202ENST00000428962 RGPD8O14715 1765 aaPredicted RBP17.3■□□□□ 0.36
THBS3-202ENST00000428962 USP54Q70EL1 1684 aa17.3■□□□□ 0.36
THBS3-202ENST00000428962 AEBP1Q8IUX7 1158 aa17.3■□□□□ 0.36
THBS3-202ENST00000428962 TSPYL6Q8N831 410 aa17.3■□□□□ 0.36
THBS3-202ENST00000428962 ABCC4O15439 1325 aa17.3■□□□□ 0.36
THBS3-202ENST00000428962 LTBP4Q8N2S1 1624 aa17.29■□□□□ 0.36
THBS3-202ENST00000428962 FAM83GA6ND36 823 aa17.29■□□□□ 0.36
THBS3-202ENST00000428962 HSP90AB2PQ58FF8 381 aa17.28■□□□□ 0.36
THBS3-202ENST00000428962 MAP3K19Q56UN5 1328 aa17.28■□□□□ 0.36
THBS3-202ENST00000428962 KIF24Q5T7B8 1368 aa17.28■□□□□ 0.36
THBS3-202ENST00000428962 NPHP4O75161 1426 aaPredicted RBP17.28■□□□□ 0.36
THBS3-202ENST00000428962 KIAA0232Q92628 1395 aa17.28■□□□□ 0.36
THBS3-202ENST00000428962 USP19O94966 1318 aa17.28■□□□□ 0.36
THBS3-202ENST00000428962 C8orf58Q8NAV2 365 aa17.27■□□□□ 0.36
THBS3-202ENST00000428962 KDRP35968 1356 aa17.26■□□□□ 0.35
THBS3-202ENST00000428962 ZBTB7BO15156 539 aaPredicted RBP17.26■□□□□ 0.35
THBS3-202ENST00000428962 KCNA6P17658 529 aa17.26■□□□□ 0.35
THBS3-202ENST00000428962 DCTN1Q14203 1278 aa17.26■□□□□ 0.35
THBS3-202ENST00000428962 BECN1Q14457 450 aa17.26■□□□□ 0.35
THBS3-202ENST00000428962 ELL2O00472 640 aaPredicted RBP17.25■□□□□ 0.35
THBS3-202ENST00000428962 CHL1O00533 1208 aa17.25■□□□□ 0.35
THBS3-202ENST00000428962 AMPHP49418 695 aa17.25■□□□□ 0.35
THBS3-202ENST00000428962 SOX12O15370 315 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms