RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 C19orf44Q9H6X5 657 aa13.71□□□□□ -0.22
CUX1-205ENST00000425244 EMILIN1Q9Y6C2 1016 aa13.71□□□□□ -0.22
CUX1-205ENST00000425244 PSME1Q06323 249 aa13.7□□□□□ -0.22
CUX1-205ENST00000425244 WDR63Q8IWG1 891 aa13.7□□□□□ -0.22
CUX1-205ENST00000425244 TNNQ9UQP3 1299 aa13.7□□□□□ -0.22
CUX1-205ENST00000425244 STRCP1A6NGW2 1772 aa13.7□□□□□ -0.22
CUX1-205ENST00000425244 TOPAZ1Q8N9V7 1692 aa13.69□□□□□ -0.22
CUX1-205ENST00000425244 NEFMP07197 916 aa13.69□□□□□ -0.22
CUX1-205ENST00000425244 IQSEC2Q5JU85 1478 aa13.69□□□□□ -0.22
CUX1-205ENST00000425244 FMN2Q9NZ56 1722 aa13.69□□□□□ -0.22
CUX1-205ENST00000425244 ABTB2Q8N961 1025 aa13.69□□□□□ -0.22
CUX1-205ENST00000425244 AKAP12Q02952 1782 aa13.69□□□□□ -0.22
CUX1-205ENST00000425244 DDX17Q92841 729 aaKnown RBP13.68□□□□□ -0.22
CUX1-205ENST00000425244 PHF23Q9BUL5 403 aaPredicted RBP13.68□□□□□ -0.22
CUX1-205ENST00000425244 MYH16Q9H6N6 1097 aa13.68□□□□□ -0.22
CUX1-205ENST00000425244 MON2Q7Z3U7 1717 aa13.68□□□□□ -0.22
CUX1-205ENST00000425244 RLBP1P12271 317 aa13.68□□□□□ -0.22
CUX1-205ENST00000425244 NLRP6P59044 892 aa13.68□□□□□ -0.22
CUX1-205ENST00000425244 POLKQ9UBT6 870 aa13.68□□□□□ -0.22
CUX1-205ENST00000425244 TSR2Q969E8 191 aaKnown RBP13.67□□□□□ -0.22
CUX1-205ENST00000425244 NWD1Q149M9 1564 aa13.67□□□□□ -0.22
CUX1-205ENST00000425244 ANKARQ7Z5J8 1434 aa13.67□□□□□ -0.22
CUX1-205ENST00000425244 CCDC27Q2M243 656 aa13.66□□□□□ -0.22
CUX1-205ENST00000425244 MAPK8IP3Q9UPT6 1336 aa13.66□□□□□ -0.22
CUX1-205ENST00000425244 ZBTB7CA1YPR0 619 aa13.66□□□□□ -0.22
CUX1-205ENST00000425244 ANKRD26Q9UPS8 1709 aa13.65□□□□□ -0.22
CUX1-205ENST00000425244 MAP2P11137 1827 aaKnown RBP13.65□□□□□ -0.22
CUX1-205ENST00000425244 MSH6P52701 1360 aa13.64□□□□□ -0.23
CUX1-205ENST00000425244 DIAPH1O60610 1272 aaKnown RBP13.64□□□□□ -0.23
CUX1-205ENST00000425244 PCDHB15Q9Y5E8 787 aa13.64□□□□□ -0.23
CUX1-205ENST00000425244 FTSJ3Q8IY81 847 aaKnown RBP13.63□□□□□ -0.23
CUX1-205ENST00000425244 TMPOP42166 694 aaKnown RBP13.62□□□□□ -0.23
CUX1-205ENST00000425244 CADPS2Q86UW7 1296 aa13.62□□□□□ -0.23
CUX1-205ENST00000425244 TTC21AQ8NDW8 1320 aa13.62□□□□□ -0.23
CUX1-205ENST00000425244 HMOX1P09601 288 aa13.62□□□□□ -0.23
CUX1-205ENST00000425244 EXOSC9Q06265 439 aaKnown RBP13.62□□□□□ -0.23
CUX1-205ENST00000425244 SMC4Q9NTJ3 1288 aa13.62□□□□□ -0.23
CUX1-205ENST00000425244 NRKQ7Z2Y5 1582 aa13.62□□□□□ -0.23
CUX1-205ENST00000425244 SSH2Q76I76 1423 aa13.61□□□□□ -0.23
CUX1-205ENST00000425244 C1orf167Q5SNV9 1468 aa13.61□□□□□ -0.23
CUX1-205ENST00000425244 PLEKHF1Q96S99 279 aa13.61□□□□□ -0.23
CUX1-205ENST00000425244 RIPK4P57078 832 aa13.6□□□□□ -0.23
CUX1-205ENST00000425244 ZKSCAN2Q63HK3 967 aa13.6□□□□□ -0.23
CUX1-205ENST00000425244 KRT28Q7Z3Y7 464 aa13.6□□□□□ -0.23
CUX1-205ENST00000425244 HSP90AB2PQ58FF8 381 aa13.6□□□□□ -0.23
CUX1-205ENST00000425244 TRIM35Q9UPQ4 493 aa13.6□□□□□ -0.23
CUX1-205ENST00000425244 OVOS2A0A0J9YW53 1432 aa13.59□□□□□ -0.23
CUX1-205ENST00000425244 OVOS2Q6IE36 1432 aa13.59□□□□□ -0.23
CUX1-205ENST00000425244 AMPHP49418 695 aa13.59□□□□□ -0.23
CUX1-205ENST00000425244 DZIP1LQ8IYY4 767 aaKnown RBP13.59□□□□□ -0.23
CUX1-205ENST00000425244 PIK3C2AO00443 1686 aa13.58□□□□□ -0.23
CUX1-205ENST00000425244 LRRC7Q96NW7 1537 aa13.58□□□□□ -0.24
CUX1-205ENST00000425244 MAP3K19Q56UN5 1328 aa13.58□□□□□ -0.24
CUX1-205ENST00000425244 MVPQ14764 893 aaKnown RBP13.58□□□□□ -0.24
CUX1-205ENST00000425244 MST1RQ04912 1400 aa13.58□□□□□ -0.24
CUX1-205ENST00000425244 SEC24BO95487 1268 aa13.58□□□□□ -0.24
CUX1-205ENST00000425244 SSH1Q8WYL5 1049 aa13.58□□□□□ -0.24
CUX1-205ENST00000425244 LTV1Q96GA3 475 aaPredicted RBP13.58□□□□□ -0.24
CUX1-205ENST00000425244 RWDD1Q9H446 243 aaPredicted RBP13.58□□□□□ -0.24
CUX1-205ENST00000425244 PDZRN3Q9UPQ7 1066 aa13.58□□□□□ -0.24
CUX1-205ENST00000425244 ITPRIPQ8IWB1 547 aa13.57□□□□□ -0.24
CUX1-205ENST00000425244 USP35Q9P2H5 1018 aa13.57□□□□□ -0.24
CUX1-205ENST00000425244 AATKQ6ZMQ8 1374 aa13.57□□□□□ -0.24
CUX1-205ENST00000425244 SLAIN2Q9P270 581 aa13.56□□□□□ -0.24
CUX1-205ENST00000425244 COL3A1P02461 1466 aaPredicted RBP13.56□□□□□ -0.24
CUX1-205ENST00000425244 XIRP1Q702N8 1843 aaKnown RBP13.56□□□□□ -0.24
CUX1-205ENST00000425244 AAMPQ13685 434 aa13.56□□□□□ -0.24
CUX1-205ENST00000425244 NCBP3Q53F19 620 aaKnown RBP13.56□□□□□ -0.24
CUX1-205ENST00000425244 TRIM27P14373 513 aa13.55□□□□□ -0.24
CUX1-205ENST00000425244 PRKAR2BP31323 418 aa13.55□□□□□ -0.24
CUX1-205ENST00000425244 PNPLA6Q8IY17 1366 aa13.55□□□□□ -0.24
CUX1-205ENST00000425244 NOB1Q9ULX3 412 aaKnown RBP13.55□□□□□ -0.24
CUX1-205ENST00000425244 IL13P35225 146 aa13.54□□□□□ -0.24
CUX1-205ENST00000425244 EIF4A2Q14240 407 aaKnown RBP13.54□□□□□ -0.24
CUX1-205ENST00000425244 NFKBIBQ15653 356 aa13.54□□□□□ -0.24
CUX1-205ENST00000425244 CABLES1Q8TDN4 633 aa13.54□□□□□ -0.24
CUX1-205ENST00000425244 CT47B1P0C2W7 299 aaPredicted RBP13.54□□□□□ -0.24
CUX1-205ENST00000425244 BRINP3Q76B58 766 aa13.54□□□□□ -0.24
CUX1-205ENST00000425244 PNNQ9H307 717 aaKnown RBP13.54□□□□□ -0.24
CUX1-205ENST00000425244 USP31Q70CQ4 1352 aa13.54□□□□□ -0.24
CUX1-205ENST00000425244 AEBP1Q8IUX7 1158 aa13.53□□□□□ -0.24
CUX1-205ENST00000425244 USP19O94966 1318 aa13.53□□□□□ -0.24
CUX1-205ENST00000425244 ZC3H6P61129 1189 aaKnown RBP13.53□□□□□ -0.24
CUX1-205ENST00000425244 SULT6B1Q6IMI4 303 aa13.53□□□□□ -0.24
CUX1-205ENST00000425244 ATF7IPQ6VMQ6 1270 aa13.53□□□□□ -0.24
CUX1-205ENST00000425244 PKNOX2Q96KN3 472 aa13.53□□□□□ -0.24
CUX1-205ENST00000425244 DCCP43146 1447 aa13.53□□□□□ -0.24
CUX1-205ENST00000425244 NCOA3Q9Y6Q9 1424 aa13.53□□□□□ -0.24
CUX1-205ENST00000425244 NPHP3Q7Z494 1330 aa13.52□□□□□ -0.24
CUX1-205ENST00000425244 CDK12Q9NYV4 1490 aaPredicted RBP13.52□□□□□ -0.24
CUX1-205ENST00000425244 AEBP2Q6ZN18 517 aaPredicted RBP13.52□□□□□ -0.24
CUX1-205ENST00000425244 THUMPD2Q9BTF0 503 aaKnown RBP13.52□□□□□ -0.24
CUX1-205ENST00000425244 FCHSD2O94868 740 aa13.52□□□□□ -0.25
CUX1-205ENST00000425244 GCP02774 474 aa13.52□□□□□ -0.25
CUX1-205ENST00000425244 PHACTR3Q96KR7 559 aa13.51□□□□□ -0.25
CUX1-205ENST00000425244 UPF2Q9HAU5 1272 aaKnown RBP13.51□□□□□ -0.25
CUX1-205ENST00000425244 IL16Q14005 1332 aa13.51□□□□□ -0.25
CUX1-205ENST00000425244 TMEM57Q8N5G2 664 aa13.51□□□□□ -0.25
CUX1-205ENST00000425244 DDX19BQ9UMR2 479 aa13.51□□□□□ -0.25
CUX1-205ENST00000425244 PEAK1Q9H792 1746 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms