RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CXXC1Q9P0U4 656 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-207ENST00000419472 NCLP19338 710 aaKnown RBP7.37□□□□□ -1.23
VPS13A-207ENST00000419472 SLFNL1Q499Z3 407 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 EAPPQ56P03 285 aaPredicted RBP7.37□□□□□ -1.23
VPS13A-207ENST00000419472 TAS1R3Q7RTX0 852 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 RNF135Q8IUD6 432 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 FKBPLQ9UIM3 349 aa7.37□□□□□ -1.23
VPS13A-207ENST00000419472 P4HBP07237 508 aaKnown RBP7.36□□□□□ -1.23
VPS13A-207ENST00000419472 EGFL7Q9UHF1 273 aa7.36□□□□□ -1.23
VPS13A-207ENST00000419472 ZC3H4Q9UPT8 1303 aaKnown RBP7.36□□□□□ -1.23
VPS13A-207ENST00000419472 C21orf2O43822 256 aa7.36□□□□□ -1.23
VPS13A-207ENST00000419472 NT5DC4Q86YG4 428 aa7.36□□□□□ -1.23
VPS13A-207ENST00000419472 MAP10Q9P2G4 905 aa7.36□□□□□ -1.23
VPS13A-207ENST00000419472 PACS2Q86VP3 889 aa7.35□□□□□ -1.23
VPS13A-207ENST00000419472 PHTF2Q8N3S3 785 aa7.35□□□□□ -1.23
VPS13A-207ENST00000419472 SCAMP3O14828 347 aaKnown RBP7.35□□□□□ -1.23
VPS13A-207ENST00000419472 PURBQ96QR8 312 aaKnown RBP7.35□□□□□ -1.23
VPS13A-207ENST00000419472 BAZ1AQ9NRL2 1556 aaPredicted RBP7.35□□□□□ -1.23
VPS13A-207ENST00000419472 EVX2Q03828 476 aa7.34□□□□□ -1.23
VPS13A-207ENST00000419472 METTL16Q86W50 562 aaKnown RBP7.34□□□□□ -1.23
VPS13A-207ENST00000419472 TINF2Q9BSI4 451 aa7.34□□□□□ -1.23
VPS13A-207ENST00000419472 DNAAF2Q9NVR5 837 aaKnown RBP7.34□□□□□ -1.23
VPS13A-207ENST00000419472 IQSEC3Q9UPP2 1182 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-207ENST00000419472 SMARCA4P51532 1647 aa7.34□□□□□ -1.23
VPS13A-207ENST00000419472 OCSTAMPQ9BR26 566 aa7.34□□□□□ -1.23
VPS13A-207ENST00000419472 BCL2L12Q9HB09 334 aa7.34□□□□□ -1.23
VPS13A-207ENST00000419472 PEG3Q9GZU2 1588 aa7.33□□□□□ -1.24
VPS13A-207ENST00000419472 SFI1A8K8P3 1242 aa7.33□□□□□ -1.24
VPS13A-207ENST00000419472 TRAF7Q6Q0C0 670 aa7.33□□□□□ -1.24
VPS13A-207ENST00000419472 SMARCA2P51531 1590 aa7.33□□□□□ -1.24
VPS13A-207ENST00000419472 ZBTB7BO15156 539 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-207ENST00000419472 PUS10Q3MIT2 529 aaKnown RBP7.33□□□□□ -1.24
VPS13A-207ENST00000419472 RETREG3Q86VR2 466 aa7.33□□□□□ -1.24
VPS13A-207ENST00000419472 ZSCAN29Q8IWY8 852 aaPredicted RBP7.33□□□□□ -1.24
VPS13A-207ENST00000419472 PRKAG2Q9UGJ0 569 aa7.33□□□□□ -1.24
VPS13A-207ENST00000419472 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.33□□□□□ -1.24
VPS13A-207ENST00000419472 HMGXB3Q12766 1538 aa7.33□□□□□ -1.24
VPS13A-207ENST00000419472 TNNI2P48788 182 aa7.32□□□□□ -1.24
VPS13A-207ENST00000419472 LYPD8Q6UX82 237 aa7.32□□□□□ -1.24
VPS13A-207ENST00000419472 LHX6Q9UPM6 363 aa7.32□□□□□ -1.24
VPS13A-207ENST00000419472 GTF2F1P35269 517 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS13A-207ENST00000419472 EML3Q32P44 896 aa7.32□□□□□ -1.24
VPS13A-207ENST00000419472 RGL4Q8IZJ4 473 aa7.32□□□□□ -1.24
VPS13A-207ENST00000419472 TMEM87AQ8NBN3 555 aa7.32□□□□□ -1.24
VPS13A-207ENST00000419472 NCAPD3P42695 1498 aa7.32□□□□□ -1.24
VPS13A-207ENST00000419472 CFHP08603 1231 aa7.31□□□□□ -1.24
VPS13A-207ENST00000419472 FMNL1O95466 1100 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-207ENST00000419472 PTPREP23469 700 aa7.31□□□□□ -1.24
VPS13A-207ENST00000419472 CCDC144BQ3MJ40 725 aa7.31□□□□□ -1.24
VPS13A-207ENST00000419472 TMC7Q7Z402 723 aa7.31□□□□□ -1.24
VPS13A-207ENST00000419472 CERS3Q8IU89 383 aa7.31□□□□□ -1.24
VPS13A-207ENST00000419472 GPATCH3Q96I76 525 aa7.31□□□□□ -1.24
VPS13A-207ENST00000419472 PCDHB9Q9Y5E1 797 aa7.31□□□□□ -1.24
VPS13A-207ENST00000419472 ARID4BQ4LE39 1312 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-207ENST00000419472 SBNO2Q9Y2G9 1366 aa7.31□□□□□ -1.24
VPS13A-207ENST00000419472 LZTS3O60299 673 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-207ENST00000419472 PIF1Q9H611 641 aa7.31□□□□□ -1.24
VPS13A-207ENST00000419472 SEPT9Q9UHD8 586 aaPredicted RBP7.31□□□□□ -1.24
VPS13A-207ENST00000419472 MARCH6O60337 910 aa7.3□□□□□ -1.24
VPS13A-207ENST00000419472 ATP6V1AP38606 617 aa7.3□□□□□ -1.24
VPS13A-207ENST00000419472 FKBP4Q02790 459 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS13A-207ENST00000419472 NAA30Q147X3 362 aaPredicted RBP7.3□□□□□ -1.24
VPS13A-207ENST00000419472 ACBD3Q9H3P7 528 aa7.3□□□□□ -1.24
VPS13A-207ENST00000419472 SIX5Q8N196 739 aa7.3□□□□□ -1.24
VPS13A-207ENST00000419472 CAPN10Q9HC96 672 aa7.3□□□□□ -1.24
VPS13A-207ENST00000419472 KIAA1468Q9P260 1216 aa7.3□□□□□ -1.24
VPS13A-207ENST00000419472 F12P00748 615 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-207ENST00000419472 FKBP5Q13451 457 aaPredicted RBP7.29□□□□□ -1.24
VPS13A-207ENST00000419472 GRIPAP1Q4V328 841 aa7.29□□□□□ -1.24
VPS13A-207ENST00000419472 RNF19BQ6ZMZ0 732 aa7.29□□□□□ -1.24
VPS13A-207ENST00000419472 TPCN2Q8NHX9 752 aa7.29□□□□□ -1.24
VPS13A-207ENST00000419472 SLC27A5Q9Y2P5 690 aa7.29□□□□□ -1.24
VPS13A-207ENST00000419472 SEC13P55735 322 aa7.29□□□□□ -1.24
VPS13A-207ENST00000419472 CCDC102BQ68D86 513 aa7.29□□□□□ -1.24
VPS13A-207ENST00000419472 DESI1Q6ICB0 168 aa7.29□□□□□ -1.24
VPS13A-207ENST00000419472 RAB11FIP3O75154 756 aa7.28□□□□□ -1.24
VPS13A-207ENST00000419472 FANCCQ00597 558 aa7.28□□□□□ -1.24
VPS13A-207ENST00000419472 LARGE2Q8N3Y3 721 aa7.28□□□□□ -1.24
VPS13A-207ENST00000419472 SETDB2Q96T68 719 aa7.28□□□□□ -1.24
VPS13A-207ENST00000419472 CHIC2Q9UKJ5 165 aa7.28□□□□□ -1.24
VPS13A-207ENST00000419472 OXLD1Q5BKU9 147 aa7.28□□□□□ -1.24
VPS13A-207ENST00000419472 PPP4R3BQ5MIZ7 849 aa7.28□□□□□ -1.24
VPS13A-207ENST00000419472 PMFBP1Q8TBY8 1022 aa7.28□□□□□ -1.24
VPS13A-207ENST00000419472 HINFPQ9BQA5 517 aa7.28□□□□□ -1.24
VPS13A-207ENST00000419472 DNAJA1P31689 397 aaKnown RBP7.27□□□□□ -1.25
VPS13A-207ENST00000419472 GTF2IP78347 998 aa7.27□□□□□ -1.25
VPS13A-207ENST00000419472 NOL8Q76FK4 1167 aaKnown RBP7.27□□□□□ -1.25
VPS13A-207ENST00000419472 NLGN1Q8N2Q7 840 aa7.27□□□□□ -1.25
VPS13A-207ENST00000419472 CCDC85AQ96PX6 553 aaPredicted RBP7.27□□□□□ -1.25
VPS13A-207ENST00000419472 PARP2Q9UGN5 583 aa7.27□□□□□ -1.25
VPS13A-207ENST00000419472 NOD1Q9Y239 953 aa7.27□□□□□ -1.25
VPS13A-207ENST00000419472 ATAD2BQ9ULI0 1458 aa7.27□□□□□ -1.25
VPS13A-207ENST00000419472 ATP1A2P50993 1020 aa7.27□□□□□ -1.25
VPS13A-207ENST00000419472 GPR153Q6NV75 609 aa7.27□□□□□ -1.25
VPS13A-207ENST00000419472 BLOC1S3Q6QNY0 202 aa7.27□□□□□ -1.25
VPS13A-207ENST00000419472 MICAL1Q8TDZ2 1067 aa7.27□□□□□ -1.25
VPS13A-207ENST00000419472 TMA7Q9Y2S6 64 aaKnown RBP7.27□□□□□ -1.25
VPS13A-207ENST00000419472 COL19A1Q14993 1142 aa7.26□□□□□ -1.25
VPS13A-207ENST00000419472 NOP9Q86U38 636 aaKnown RBP7.26□□□□□ -1.25
VPS13A-207ENST00000419472 WWC3Q9ULE0 1092 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms