RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 FRAT1Q92837 279 aaPredicted RBP10.72□□□□□ -0.69
USP54-203ENST00000418501 ALDH1L2Q3SY69 923 aa10.72□□□□□ -0.69
USP54-203ENST00000418501 PLEKHO1Q53GL0 409 aaPredicted RBP10.72□□□□□ -0.69
USP54-203ENST00000418501 OVOS2A0A0J9YW53 1432 aa10.72□□□□□ -0.69
USP54-203ENST00000418501 OVOS2Q6IE36 1432 aa10.72□□□□□ -0.69
USP54-203ENST00000418501 TRMT2AQ8IZ69 625 aaKnown RBP10.71□□□□□ -0.69
USP54-203ENST00000418501 EIF4A2Q14240 407 aaKnown RBP10.71□□□□□ -0.69
USP54-203ENST00000418501 EIF5BO60841 1220 aaKnown RBP10.71□□□□□ -0.7
USP54-203ENST00000418501 AMOTQ4VCS5 1084 aa10.71□□□□□ -0.7
USP54-203ENST00000418501 ANP32EQ9BTT0 268 aa10.71□□□□□ -0.7
USP54-203ENST00000418501 MON2Q7Z3U7 1717 aa10.7□□□□□ -0.7
USP54-203ENST00000418501 TMEM94Q12767 1356 aa10.7□□□□□ -0.7
USP54-203ENST00000418501 MAP3K19Q56UN5 1328 aa10.7□□□□□ -0.7
USP54-203ENST00000418501 C1orf141Q5JVX7 400 aa10.7□□□□□ -0.7
USP54-203ENST00000418501 IP6K1Q92551 441 aa10.7□□□□□ -0.7
USP54-203ENST00000418501 API5Q9BZZ5 524 aaKnown RBP10.7□□□□□ -0.7
USP54-203ENST00000418501 SOS1Q07889 1333 aaPredicted RBP10.7□□□□□ -0.7
USP54-203ENST00000418501 CSB-PGBD3P0DP91 1061 aa10.7□□□□□ -0.7
USP54-203ENST00000418501 CENPQQ7L2Z9 268 aaPredicted RBP10.7□□□□□ -0.7
USP54-203ENST00000418501 FOXO3O43524 673 aa10.7□□□□□ -0.7
USP54-203ENST00000418501 PLEKHF1Q96S99 279 aa10.7□□□□□ -0.7
USP54-203ENST00000418501 B4GALNT3Q6L9W6 998 aa10.69□□□□□ -0.7
USP54-203ENST00000418501 RWDD1Q9H446 243 aaPredicted RBP10.69□□□□□ -0.7
USP54-203ENST00000418501 BABAM1Q9NWV8 329 aa10.69□□□□□ -0.7
USP54-203ENST00000418501 LRRC7Q96NW7 1537 aa10.69□□□□□ -0.7
USP54-203ENST00000418501 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.69□□□□□ -0.7
USP54-203ENST00000418501 TCERG1O14776 1098 aaKnown RBP10.69□□□□□ -0.7
USP54-203ENST00000418501 STK31Q9BXU1 1019 aa10.69□□□□□ -0.7
USP54-203ENST00000418501 DDX19BQ9UMR2 479 aa10.69□□□□□ -0.7
USP54-203ENST00000418501 CFAP44Q96MT7 982 aa10.68□□□□□ -0.7
USP54-203ENST00000418501 PHF23Q9BUL5 403 aaPredicted RBP10.68□□□□□ -0.7
USP54-203ENST00000418501 AKAP12Q02952 1782 aa10.68□□□□□ -0.7
USP54-203ENST00000418501 NWD1Q149M9 1564 aa10.68□□□□□ -0.7
USP54-203ENST00000418501 LTV1Q96GA3 475 aaPredicted RBP10.68□□□□□ -0.7
USP54-203ENST00000418501 ZRANB1Q9UGI0 708 aa10.68□□□□□ -0.7
USP54-203ENST00000418501 HOXC9P31274 260 aa10.68□□□□□ -0.7
USP54-203ENST00000418501 NUTM2GQ5VZR2 741 aa10.68□□□□□ -0.7
USP54-203ENST00000418501 FANCIQ9NVI1 1328 aa10.68□□□□□ -0.7
USP54-203ENST00000418501 FMN2Q9NZ56 1722 aa10.68□□□□□ -0.7
USP54-203ENST00000418501 DZIP1LQ8IYY4 767 aaKnown RBP10.68□□□□□ -0.7
USP54-203ENST00000418501 TOPAZ1Q8N9V7 1692 aa10.67□□□□□ -0.7
USP54-203ENST00000418501 RAPGEF4Q8WZA2 1011 aa10.67□□□□□ -0.7
USP54-203ENST00000418501 CRBNQ96SW2 442 aa10.67□□□□□ -0.7
USP54-203ENST00000418501 COL3A1P02461 1466 aaPredicted RBP10.67□□□□□ -0.7
USP54-203ENST00000418501 CHD2O14647 1828 aaKnown RBP10.67□□□□□ -0.7
USP54-203ENST00000418501 EXOSC9Q06265 439 aaKnown RBP10.67□□□□□ -0.7
USP54-203ENST00000418501 EXOC6Q8TAG9 804 aa10.67□□□□□ -0.7
USP54-203ENST00000418501 HDAC5Q9UQL6 1122 aa10.67□□□□□ -0.7
USP54-203ENST00000418501 KIF1AQ12756 1690 aa10.67□□□□□ -0.7
USP54-203ENST00000418501 GNAT3A8MTJ3 354 aa10.67□□□□□ -0.7
USP54-203ENST00000418501 RARSP54136 660 aaKnown RBP10.67□□□□□ -0.7
USP54-203ENST00000418501 HSPA2P54652 639 aa10.67□□□□□ -0.7
USP54-203ENST00000418501 SSH2Q76I76 1423 aa10.66□□□□□ -0.7
USP54-203ENST00000418501 IQSEC2Q5JU85 1478 aa10.66□□□□□ -0.7
USP54-203ENST00000418501 HSP90AB2PQ58FF8 381 aa10.66□□□□□ -0.7
USP54-203ENST00000418501 C1orf167Q5SNV9 1468 aa10.66□□□□□ -0.7
USP54-203ENST00000418501 HSP90AB1P08238 724 aaKnown RBP10.66□□□□□ -0.7
USP54-203ENST00000418501 GCP02774 474 aa10.65□□□□□ -0.7
USP54-203ENST00000418501 TEFQ10587 303 aa10.65□□□□□ -0.7
USP54-203ENST00000418501 ERICH6Q7L0X2 663 aa10.65□□□□□ -0.7
USP54-203ENST00000418501 SPG7Q9UQ90 795 aa10.65□□□□□ -0.7
USP54-203ENST00000418501 TATP17735 454 aaPredicted RBP10.65□□□□□ -0.71
USP54-203ENST00000418501 ARHGAP45Q92619 1136 aa10.65□□□□□ -0.71
USP54-203ENST00000418501 TSPYL4Q9UJ04 414 aa10.65□□□□□ -0.71
USP54-203ENST00000418501 TWISTNBQ3B726 338 aaPredicted RBP10.64□□□□□ -0.71
USP54-203ENST00000418501 IGSF1Q8N6C5 1336 aa10.64□□□□□ -0.71
USP54-203ENST00000418501 ORAI2Q96SN7 254 aa10.64□□□□□ -0.71
USP54-203ENST00000418501 TRIM35Q9UPQ4 493 aa10.64□□□□□ -0.71
USP54-203ENST00000418501 PLIN1O60240 522 aa10.63□□□□□ -0.71
USP54-203ENST00000418501 ITPRIPQ8IWB1 547 aa10.63□□□□□ -0.71
USP54-203ENST00000418501 CLUAP1Q96AJ1 413 aa10.63□□□□□ -0.71
USP54-203ENST00000418501 EYA1Q99502 592 aa10.63□□□□□ -0.71
USP54-203ENST00000418501 ANP32AP39687 249 aaKnown RBP10.62□□□□□ -0.71
USP54-203ENST00000418501 ATF7IPQ6VMQ6 1270 aa10.62□□□□□ -0.71
USP54-203ENST00000418501 CCDC30Q5VVM6 783 aa10.62□□□□□ -0.71
USP54-203ENST00000418501 RBM33Q96EV2 1170 aaKnown RBP10.62□□□□□ -0.71
USP54-203ENST00000418501 DAXXQ9UER7 740 aaPredicted RBP10.62□□□□□ -0.71
USP54-203ENST00000418501 TSR2Q969E8 191 aaKnown RBP10.62□□□□□ -0.71
USP54-203ENST00000418501 NLRP2Q9NX02 1062 aa10.62□□□□□ -0.71
USP54-203ENST00000418501 SHPRHQ149N8 1683 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 KIAA0232Q92628 1395 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 PLEKHG2Q9H7P9 1386 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 ANKRD24Q8TF21 1146 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 SLAIN2Q9P270 581 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 MAP3K5Q99683 1374 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 EVA1CP58658 441 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 TAF7Q15545 349 aaPredicted RBP10.61□□□□□ -0.71
USP54-203ENST00000418501 BCAR3O75815 825 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 PLEKHG5O94827 1062 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 ZNF530Q6P9A1 599 aaPredicted RBP10.61□□□□□ -0.71
USP54-203ENST00000418501 UPF2Q9HAU5 1272 aaKnown RBP10.61□□□□□ -0.71
USP54-203ENST00000418501 TSHZ2Q9NRE2 1034 aa10.61□□□□□ -0.71
USP54-203ENST00000418501 FBLN1P23142 703 aa10.6□□□□□ -0.71
USP54-203ENST00000418501 BRPF1P55201 1214 aaPredicted RBP10.6□□□□□ -0.71
USP54-203ENST00000418501 MVPQ14764 893 aaKnown RBP10.6□□□□□ -0.71
USP54-203ENST00000418501 ARHGEF25Q86VW2 580 aa10.6□□□□□ -0.71
USP54-203ENST00000418501 AKAP4Q5JQC9 854 aa10.6□□□□□ -0.71
USP54-203ENST00000418501 PHACTR3Q96KR7 559 aa10.6□□□□□ -0.71
USP54-203ENST00000418501 PRDM11Q9NQV5 511 aa10.6□□□□□ -0.71
USP54-203ENST00000418501 NRKQ7Z2Y5 1582 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms