RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 PDCP20941 246 aa14.27□□□□□ -0.12
UBR4-205ENST00000417040 TTC39AQ5SRH9 613 aa14.27□□□□□ -0.12
UBR4-205ENST00000417040 DDX11Q96FC9 970 aa14.27□□□□□ -0.12
UBR4-205ENST00000417040 PDS5BQ9NTI5 1447 aa14.27□□□□□ -0.13
UBR4-205ENST00000417040 POLR3GO15318 223 aaPredicted RBP14.27□□□□□ -0.13
UBR4-205ENST00000417040 TAX1BP1Q86VP1 789 aa14.27□□□□□ -0.13
UBR4-205ENST00000417040 DEF6Q9H4E7 631 aa14.27□□□□□ -0.13
UBR4-205ENST00000417040 NUTM1Q86Y26 1132 aa14.26□□□□□ -0.13
UBR4-205ENST00000417040 CDK5RAP3Q96JB5 506 aa14.26□□□□□ -0.13
UBR4-205ENST00000417040 TANGO6Q9C0B7 1094 aa14.26□□□□□ -0.13
UBR4-205ENST00000417040 ATF7IPQ6VMQ6 1270 aa14.26□□□□□ -0.13
UBR4-205ENST00000417040 FERMT3Q86UX7 667 aa14.26□□□□□ -0.13
UBR4-205ENST00000417040 GOLGA6L10A6NI86 522 aa14.25□□□□□ -0.13
UBR4-205ENST00000417040 TMEM57Q8N5G2 664 aa14.25□□□□□ -0.13
UBR4-205ENST00000417040 CGNQ9P2M7 1197 aaKnown RBP14.25□□□□□ -0.13
UBR4-205ENST00000417040 SLC12A5Q9H2X9 1139 aa14.25□□□□□ -0.13
UBR4-205ENST00000417040 LRRFIP2Q9Y608 721 aaKnown RBP14.25□□□□□ -0.13
UBR4-205ENST00000417040 PIBF1Q8WXW3 757 aa14.25□□□□□ -0.13
UBR4-205ENST00000417040 SPINK5Q9NQ38 1064 aaPredicted RBP14.25□□□□□ -0.13
UBR4-205ENST00000417040 RBM27Q9P2N5 1060 aaKnown RBP14.25□□□□□ -0.13
UBR4-205ENST00000417040 ANKRD62A6NC57 917 aa14.25□□□□□ -0.13
UBR4-205ENST00000417040 CASTP20810 708 aaKnown RBP14.25□□□□□ -0.13
UBR4-205ENST00000417040 ENOX2Q16206 610 aaKnown RBP14.25□□□□□ -0.13
UBR4-205ENST00000417040 NEFHP12036 1026 aa14.24□□□□□ -0.13
UBR4-205ENST00000417040 PPP4R3BQ5MIZ7 849 aa14.24□□□□□ -0.13
UBR4-205ENST00000417040 NUP133Q8WUM0 1156 aa14.24□□□□□ -0.13
UBR4-205ENST00000417040 TRMT1Q9NXH9 659 aaKnown RBP14.24□□□□□ -0.13
UBR4-205ENST00000417040 IKQ13123 557 aaPredicted RBP14.24□□□□□ -0.13
UBR4-205ENST00000417040 UPF3BQ9BZI7 483 aaKnown RBP14.24□□□□□ -0.13
UBR4-205ENST00000417040 ZHX3Q9H4I2 956 aa14.24□□□□□ -0.13
UBR4-205ENST00000417040 CCDC83Q8IWF9 413 aa14.24□□□□□ -0.13
UBR4-205ENST00000417040 TAF3Q5VWG9 929 aa14.24□□□□□ -0.13
UBR4-205ENST00000417040 ZNHIT6Q9NWK9 470 aaKnown RBP14.24□□□□□ -0.13
UBR4-205ENST00000417040 MYO6Q9UM54 1294 aa14.24□□□□□ -0.13
UBR4-205ENST00000417040 CUX1P39880 1505 aa14.24□□□□□ -0.13
UBR4-205ENST00000417040 TNPO1Q92973 898 aaKnown RBP14.23□□□□□ -0.13
UBR4-205ENST00000417040 EIF3JO75822 258 aaKnown RBP14.23□□□□□ -0.13
UBR4-205ENST00000417040 ERLIN1O75477 346 aa14.23□□□□□ -0.13
UBR4-205ENST00000417040 KRT18P05783 430 aaKnown RBP14.23□□□□□ -0.13
UBR4-205ENST00000417040 SART3Q15020 963 aaKnown RBP14.23□□□□□ -0.13
UBR4-205ENST00000417040 NLRP2Q9NX02 1062 aa14.23□□□□□ -0.13
UBR4-205ENST00000417040 AACSQ86V21 672 aa14.23□□□□□ -0.13
UBR4-205ENST00000417040 RBM33Q96EV2 1170 aaKnown RBP14.23□□□□□ -0.13
UBR4-205ENST00000417040 NCOA2Q15596 1464 aa14.22□□□□□ -0.13
UBR4-205ENST00000417040 HIP1O00291 1037 aa14.22□□□□□ -0.13
UBR4-205ENST00000417040 TBC1D2Q9BYX2 928 aa14.22□□□□□ -0.13
UBR4-205ENST00000417040 GDPD2Q9HCC8 539 aa14.22□□□□□ -0.13
UBR4-205ENST00000417040 MYL6BP14649 208 aa14.22□□□□□ -0.13
UBR4-205ENST00000417040 USP25Q9UHP3 1055 aa14.22□□□□□ -0.13
UBR4-205ENST00000417040 ZMYND15Q9H091 742 aa14.22□□□□□ -0.13
UBR4-205ENST00000417040 TBC1D2BQ9UPU7 963 aa14.22□□□□□ -0.13
UBR4-205ENST00000417040 RAPGEF4Q8WZA2 1011 aa14.22□□□□□ -0.13
UBR4-205ENST00000417040 MAP3K11Q16584 847 aa14.21□□□□□ -0.13
UBR4-205ENST00000417040 MIS18AQ9NYP9 233 aa14.21□□□□□ -0.13
UBR4-205ENST00000417040 ANKRD50Q9ULJ7 1429 aa14.21□□□□□ -0.13
UBR4-205ENST00000417040 CBFA2T2O43439 604 aa14.21□□□□□ -0.13
UBR4-205ENST00000417040 TXLNAP40222 546 aa14.21□□□□□ -0.13
UBR4-205ENST00000417040 C16orf45Q96MC5 204 aaPredicted RBP14.21□□□□□ -0.13
UBR4-205ENST00000417040 SULT6B1Q6IMI4 303 aa14.21□□□□□ -0.14
UBR4-205ENST00000417040 CCDC69A6NI79 296 aa14.21□□□□□ -0.14
UBR4-205ENST00000417040 UBXN4Q92575 508 aa14.21□□□□□ -0.14
UBR4-205ENST00000417040 SEPT11Q9NVA2 429 aaKnown RBP14.21□□□□□ -0.14
UBR4-205ENST00000417040 NLRP6P59044 892 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 PTPN14Q15678 1187 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 FKBP4Q02790 459 aaKnown RBP eCLIP14.2□□□□□ -0.14
UBR4-205ENST00000417040 ZNF830Q96NB3 372 aaPredicted RBP14.2□□□□□ -0.14
UBR4-205ENST00000417040 CFAP100Q494V2 611 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 TMCO3Q6UWJ1 677 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 ZBTB9Q96C00 473 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 CASQ1P31415 396 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 SLFN5Q08AF3 891 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 ANKRD1Q15327 319 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 CCAR1Q8IX12 1150 aaKnown RBP14.2□□□□□ -0.14
UBR4-205ENST00000417040 RBM25P49756 843 aaKnown RBP14.2□□□□□ -0.14
UBR4-205ENST00000417040 BLOC1S2Q6QNY1 142 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 CKAP2LQ8IYA6 745 aa14.2□□□□□ -0.14
UBR4-205ENST00000417040 GPATCH11Q8N954 259 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 CIZ1Q9ULV3 898 aaPredicted RBP14.19□□□□□ -0.14
UBR4-205ENST00000417040 EXOC6BQ9Y2D4 811 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 CEP57L1Q8IYX8 460 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 GUCY1B3Q02153 619 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 CNNM1Q9NRU3 951 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 ERLIN2O94905 339 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 SYCP1Q15431 976 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 DACH1Q9UI36 760 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 GTF2F1P35269 517 aaKnown RBP eCLIP14.19□□□□□ -0.14
UBR4-205ENST00000417040 HDGFL1Q5TGJ6 251 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 KIAA1328Q86T90 577 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 ERC1Q8IUD2 1116 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 CNKSR2Q8WXI2 1034 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 CLIP2Q9UDT6 1046 aa14.19□□□□□ -0.14
UBR4-205ENST00000417040 URI1O94763 535 aaPredicted RBP14.18□□□□□ -0.14
UBR4-205ENST00000417040 CCDC158Q5M9N0 1113 aa14.18□□□□□ -0.14
UBR4-205ENST00000417040 THUMPD2Q9BTF0 503 aaKnown RBP14.18□□□□□ -0.14
UBR4-205ENST00000417040 ATP2B2Q01814 1243 aa14.18□□□□□ -0.14
UBR4-205ENST00000417040 WDR63Q8IWG1 891 aa14.18□□□□□ -0.14
UBR4-205ENST00000417040 PRAM1Q96QH2 718 aa14.18□□□□□ -0.14
UBR4-205ENST00000417040 TNNT1P13805 278 aa14.18□□□□□ -0.14
UBR4-205ENST00000417040 SEPT7Q16181 437 aaKnown RBP14.18□□□□□ -0.14
UBR4-205ENST00000417040 SRGAP3O43295 1099 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms