RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 UQCRHP07919 91 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 RIC3Q7Z5B4 369 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 PODXL2Q9NZ53 605 aa9.25□□□□□ -0.93
SYNE1-210ENST00000409694 DIAPH1O60610 1272 aaKnown RBP9.25□□□□□ -0.93
SYNE1-210ENST00000409694 SOGA3Q5TF21 947 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 NEUROD6Q96NK8 337 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 CCDC7Q96M83 1385 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 SPA17Q15506 151 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 ARHGAP29Q52LW3 1261 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 CCDC83Q8IWF9 413 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 BBXQ8WY36 941 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-210ENST00000409694 RUNDC1Q96C34 613 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 SEPT6Q14141 434 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 TSNARE1Q96NA8 513 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 VGFO15240 615 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-210ENST00000409694 KRT85P78386 507 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 IFFO1Q0D2I5 559 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 LRRC45Q96CN5 670 aa9.24□□□□□ -0.93
SYNE1-210ENST00000409694 RRP7AQ9Y3A4 280 aaKnown RBP9.24□□□□□ -0.93
SYNE1-210ENST00000409694 FOXD1Q16676 465 aa9.23□□□□□ -0.93
SYNE1-210ENST00000409694 BMS1Q14692 1282 aaKnown RBP9.23□□□□□ -0.93
SYNE1-210ENST00000409694 COG6Q9Y2V7 657 aa9.23□□□□□ -0.93
SYNE1-210ENST00000409694 USP47Q96K76 1375 aa9.23□□□□□ -0.93
SYNE1-210ENST00000409694 MPHOSPH10O00566 681 aaKnown RBP9.23□□□□□ -0.93
SYNE1-210ENST00000409694 GNAI3P08754 354 aa9.23□□□□□ -0.93
SYNE1-210ENST00000409694 NAA15Q9BXJ9 866 aaKnown RBP9.23□□□□□ -0.93
SYNE1-210ENST00000409694 CASQ1P31415 396 aa9.23□□□□□ -0.93
SYNE1-210ENST00000409694 ME1P48163 572 aa9.23□□□□□ -0.93
SYNE1-210ENST00000409694 CCDC158Q5M9N0 1113 aa9.23□□□□□ -0.93
SYNE1-210ENST00000409694 CGNQ9P2M7 1197 aaKnown RBP9.23□□□□□ -0.93
SYNE1-210ENST00000409694 KIF5CO60282 957 aa9.23□□□□□ -0.93
SYNE1-210ENST00000409694 SPC24Q8NBT2 197 aa9.23□□□□□ -0.93
SYNE1-210ENST00000409694 DDX46Q7L014 1031 aaKnown RBP9.22□□□□□ -0.93
SYNE1-210ENST00000409694 SYTL4Q96C24 671 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-210ENST00000409694 NFKBIBQ15653 356 aa9.22□□□□□ -0.93
SYNE1-210ENST00000409694 TTC39AQ5SRH9 613 aa9.22□□□□□ -0.93
SYNE1-210ENST00000409694 CYP46A1Q9Y6A2 500 aa9.22□□□□□ -0.93
SYNE1-210ENST00000409694 UBXN4Q92575 508 aa9.22□□□□□ -0.93
SYNE1-210ENST00000409694 TSG101Q99816 390 aa9.22□□□□□ -0.93
SYNE1-210ENST00000409694 TSPYL4Q9UJ04 414 aa9.22□□□□□ -0.93
SYNE1-210ENST00000409694 RIPK4P57078 832 aa9.22□□□□□ -0.93
SYNE1-210ENST00000409694 FMNL2Q96PY5 1086 aa9.22□□□□□ -0.93
SYNE1-210ENST00000409694 SSR1P43307 286 aaKnown RBP9.21□□□□□ -0.93
SYNE1-210ENST00000409694 SLC4A3P48751 1232 aa9.21□□□□□ -0.93
SYNE1-210ENST00000409694 EIF5P55010 431 aaKnown RBP9.21□□□□□ -0.93
SYNE1-210ENST00000409694 SSX2IPQ9Y2D8 614 aa9.21□□□□□ -0.93
SYNE1-210ENST00000409694 FKBP15Q5T1M5 1219 aa9.21□□□□□ -0.93
SYNE1-210ENST00000409694 TICAM2Q86XR7 235 aa9.21□□□□□ -0.93
SYNE1-210ENST00000409694 RNF214Q8ND24 703 aa9.21□□□□□ -0.93
SYNE1-210ENST00000409694 ZNF287Q9HBT7 754 aa9.21□□□□□ -0.93
SYNE1-210ENST00000409694 CCDC30Q5VVM6 783 aa9.21□□□□□ -0.93
SYNE1-210ENST00000409694 KAT6BQ8WYB5 2073 aa9.21□□□□□ -0.93
SYNE1-210ENST00000409694 GSTTP1A0A1W2PQM5 241 aa9.21□□□□□ -0.94
SYNE1-210ENST00000409694 PANK3Q9H999 370 aa9.21□□□□□ -0.94
SYNE1-210ENST00000409694 FAM114A1Q8IWE2 563 aa9.21□□□□□ -0.94
SYNE1-210ENST00000409694 SRCIN1Q9C0H9 1055 aa9.21□□□□□ -0.94
SYNE1-210ENST00000409694 ALS2CR12Q96Q35 445 aa9.21□□□□□ -0.94
SYNE1-210ENST00000409694 BCL2L13Q9BXK5 485 aa9.21□□□□□ -0.94
SYNE1-210ENST00000409694 PHAXQ9H814 394 aaKnown RBP9.21□□□□□ -0.94
SYNE1-210ENST00000409694 PLEKHH1Q9ULM0 1364 aa9.21□□□□□ -0.94
SYNE1-210ENST00000409694 FILIP1Q7Z7B0 1213 aa9.2□□□□□ -0.94
SYNE1-210ENST00000409694 PSME1Q06323 249 aa9.2□□□□□ -0.94
SYNE1-210ENST00000409694 WDR66Q8TBY9 1149 aa9.2□□□□□ -0.94
SYNE1-210ENST00000409694 NOL3O60936 208 aaKnown RBP9.2□□□□□ -0.94
SYNE1-210ENST00000409694 UPF3BQ9BZI7 483 aaKnown RBP9.2□□□□□ -0.94
SYNE1-210ENST00000409694 ZHX3Q9H4I2 956 aa9.2□□□□□ -0.94
SYNE1-210ENST00000409694 GCC1Q96CN9 775 aa9.2□□□□□ -0.94
SYNE1-210ENST00000409694 RAPGEF4Q8WZA2 1011 aa9.2□□□□□ -0.94
SYNE1-210ENST00000409694 NSRP1Q9H0G5 558 aaKnown RBP9.2□□□□□ -0.94
SYNE1-210ENST00000409694 ERICH4A6NGS2 130 aa9.2□□□□□ -0.94
SYNE1-210ENST00000409694 KIF20AO95235 890 aa9.2□□□□□ -0.94
SYNE1-210ENST00000409694 CCDC113Q9H0I3 377 aa9.2□□□□□ -0.94
SYNE1-210ENST00000409694 TIGD1Q96MW7 591 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 GTPBP4Q9BZE4 634 aaKnown RBP9.19□□□□□ -0.94
SYNE1-210ENST00000409694 BCL11BQ9C0K0 894 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-210ENST00000409694 FSD2A1L4K1 749 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 KRT32Q14532 448 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 COMMD10Q9Y6G5 202 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 FIBPO43427 364 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 PPM1FP49593 454 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-210ENST00000409694 CNTLNQ9NXG0 1405 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 GOLGA6L9A6NEM1 432 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 PRPF40AO75400 957 aaKnown RBP9.19□□□□□ -0.94
SYNE1-210ENST00000409694 KIF18AQ8NI77 898 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 EXOC6Q8TAG9 804 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 GOPCQ9HD26 462 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 LARP1Q6PKG0 1096 aaKnown RBP9.19□□□□□ -0.94
SYNE1-210ENST00000409694 RAB3IL1Q8TBN0 382 aa9.19□□□□□ -0.94
SYNE1-210ENST00000409694 USO1O60763 962 aaKnown RBP9.19□□□□□ -0.94
SYNE1-210ENST00000409694 PIBF1Q8WXW3 757 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 CTNNA3Q9UI47 895 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 ZNF76P36508 570 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 ZSCAN31Q96LW9 406 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-210ENST00000409694 STMN4Q9H169 189 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-210ENST00000409694 EHBP1Q8NDI1 1231 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 SPATA32Q96LK8 384 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 IKBKGQ9Y6K9 419 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 STAC3Q96MF2 364 aa9.18□□□□□ -0.94
SYNE1-210ENST00000409694 NAP1L3Q99457 506 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-210ENST00000409694 SEC63Q9UGP8 760 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms