RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 PHF23Q9BUL5 403 aaPredicted RBP18.5■□□□□ 0.55
GPNMB-203ENST00000409458 USP19O94966 1318 aa18.5■□□□□ 0.55
GPNMB-203ENST00000409458 RTL1A6NKG5 1358 aa18.5■□□□□ 0.55
GPNMB-203ENST00000409458 PNNQ9H307 717 aaKnown RBP18.5■□□□□ 0.55
GPNMB-203ENST00000409458 MED1Q15648 1581 aaPredicted RBP18.49■□□□□ 0.55
GPNMB-203ENST00000409458 TNS3Q68CZ2 1445 aa18.49■□□□□ 0.55
GPNMB-203ENST00000409458 LTBP4Q8N2S1 1624 aa18.49■□□□□ 0.55
GPNMB-203ENST00000409458 HOXC9P31274 260 aa18.49■□□□□ 0.55
GPNMB-203ENST00000409458 CCDC27Q2M243 656 aa18.49■□□□□ 0.55
GPNMB-203ENST00000409458 NCBP3Q53F19 620 aaKnown RBP18.49■□□□□ 0.55
GPNMB-203ENST00000409458 LMOD2Q6P5Q4 547 aa18.49■□□□□ 0.55
GPNMB-203ENST00000409458 TMPOP42166 694 aaKnown RBP18.48■□□□□ 0.55
GPNMB-203ENST00000409458 SLFN5Q08AF3 891 aa18.48■□□□□ 0.55
GPNMB-203ENST00000409458 DUSP27Q5VZP5 1158 aa18.48■□□□□ 0.55
GPNMB-203ENST00000409458 KCNH5Q8NCM2 988 aa18.48■□□□□ 0.55
GPNMB-203ENST00000409458 SPINK5Q9NQ38 1064 aaPredicted RBP18.48■□□□□ 0.55
GPNMB-203ENST00000409458 SLAIN2Q9P270 581 aa18.48■□□□□ 0.55
GPNMB-203ENST00000409458 CRYBG1Q9Y4K1 1723 aa18.48■□□□□ 0.55
GPNMB-203ENST00000409458 NEFLP07196 543 aa18.47■□□□□ 0.55
GPNMB-203ENST00000409458 FKBP8Q14318 412 aa18.47■□□□□ 0.55
GPNMB-203ENST00000409458 ARHGEF10O15013 1369 aa18.47■□□□□ 0.55
GPNMB-203ENST00000409458 AEBP1Q8IUX7 1158 aa18.47■□□□□ 0.55
GPNMB-203ENST00000409458 TRMT2AQ8IZ69 625 aaKnown RBP18.46■□□□□ 0.55
GPNMB-203ENST00000409458 NHSL1Q5SYE7 1610 aa18.45■□□□□ 0.54
GPNMB-203ENST00000409458 E9PSI1 815 aa18.45■□□□□ 0.54
GPNMB-203ENST00000409458 PLEKHG5O94827 1062 aa18.45■□□□□ 0.54
GPNMB-203ENST00000409458 GCP02774 474 aa18.45■□□□□ 0.54
GPNMB-203ENST00000409458 PHACTR3Q96KR7 559 aa18.45■□□□□ 0.54
GPNMB-203ENST00000409458 SULT6B1Q6IMI4 303 aa18.44■□□□□ 0.54
GPNMB-203ENST00000409458 DLG5Q8TDM6 1919 aa18.44■□□□□ 0.54
GPNMB-203ENST00000409458 RNF123Q5XPI4 1314 aa18.44■□□□□ 0.54
GPNMB-203ENST00000409458 TRIM35Q9UPQ4 493 aa18.44■□□□□ 0.54
GPNMB-203ENST00000409458 SPATA31A3Q5VYP0 1347 aa18.43■□□□□ 0.54
GPNMB-203ENST00000409458 IGSF1Q8N6C5 1336 aa18.43■□□□□ 0.54
GPNMB-203ENST00000409458 NEFMP07197 916 aa18.43■□□□□ 0.54
GPNMB-203ENST00000409458 WDR63Q8IWG1 891 aa18.43■□□□□ 0.54
GPNMB-203ENST00000409458 IP6K1Q92551 441 aa18.43■□□□□ 0.54
GPNMB-203ENST00000409458 RCAN3Q9UKA8 241 aa18.43■□□□□ 0.54
GPNMB-203ENST00000409458 RIPK4P57078 832 aa18.42■□□□□ 0.54
GPNMB-203ENST00000409458 IRX6P78412 446 aaPredicted RBP18.42■□□□□ 0.54
GPNMB-203ENST00000409458 ZBTB7CA1YPR0 619 aa18.41■□□□□ 0.54
GPNMB-203ENST00000409458 NFE2L2Q16236 605 aa18.41■□□□□ 0.54
GPNMB-203ENST00000409458 ARHGEF25Q86VW2 580 aa18.41■□□□□ 0.54
GPNMB-203ENST00000409458 EYA1Q99502 592 aa18.41■□□□□ 0.54
GPNMB-203ENST00000409458 KDRP35968 1356 aa18.41■□□□□ 0.54
GPNMB-203ENST00000409458 SOS2Q07890 1332 aaPredicted RBP18.41■□□□□ 0.54
GPNMB-203ENST00000409458 LTV1Q96GA3 475 aaPredicted RBP18.4■□□□□ 0.54
GPNMB-203ENST00000409458 RGPD2P0DJD1 1756 aa18.39■□□□□ 0.54
GPNMB-203ENST00000409458 RGPD5Q99666 1765 aa18.38■□□□□ 0.53
GPNMB-203ENST00000409458 ROBO1Q9Y6N7 1651 aa18.38■□□□□ 0.53
GPNMB-203ENST00000409458 ABCA3Q99758 1704 aa18.38■□□□□ 0.53
GPNMB-203ENST00000409458 CAMTA1Q9Y6Y1 1673 aa18.36■□□□□ 0.53
GPNMB-203ENST00000409458 COL18A1P39060 1754 aa18.36■□□□□ 0.53
GPNMB-203ENST00000409458 RRP1P56182 461 aaKnown RBP18.36■□□□□ 0.53
GPNMB-203ENST00000409458 CABLES1Q8TDN4 633 aa18.36■□□□□ 0.53
GPNMB-203ENST00000409458 ZC3H6P61129 1189 aaKnown RBP18.34■□□□□ 0.53
GPNMB-203ENST00000409458 IL16Q14005 1332 aa18.34■□□□□ 0.53
GPNMB-203ENST00000409458 MYH16Q9H6N6 1097 aa18.34■□□□□ 0.53
GPNMB-203ENST00000409458 ABCC6O95255 1503 aa18.33■□□□□ 0.53
GPNMB-203ENST00000409458 USHBP1Q8N6Y0 703 aa18.33■□□□□ 0.52
GPNMB-203ENST00000409458 AXIN2Q9Y2T1 843 aa18.33■□□□□ 0.52
GPNMB-203ENST00000409458 FANCIQ9NVI1 1328 aa18.33■□□□□ 0.52
GPNMB-203ENST00000409458 AHDC1Q5TGY3 1603 aaPredicted RBP18.32■□□□□ 0.52
GPNMB-203ENST00000409458 THUMPD2Q9BTF0 503 aaKnown RBP18.32■□□□□ 0.52
GPNMB-203ENST00000409458 LMO7Q8WWI1 1683 aa18.32■□□□□ 0.52
GPNMB-203ENST00000409458 LMOD3Q0VAK6 560 aa18.31■□□□□ 0.52
GPNMB-203ENST00000409458 NBPF6Q5VWK0 638 aa18.31■□□□□ 0.52
GPNMB-203ENST00000409458 ANKRD24Q8TF21 1146 aa18.31■□□□□ 0.52
GPNMB-203ENST00000409458 TSR2Q969E8 191 aaKnown RBP18.31■□□□□ 0.52
GPNMB-203ENST00000409458 NBPF4Q96M43 638 aa18.31■□□□□ 0.52
GPNMB-203ENST00000409458 NCAPD2Q15021 1401 aa18.31■□□□□ 0.52
GPNMB-203ENST00000409458 CPDO75976 1380 aa18.31■□□□□ 0.52
GPNMB-203ENST00000409458 FAM83GA6ND36 823 aa18.31■□□□□ 0.52
GPNMB-203ENST00000409458 LRRC59Q96AG4 307 aaKnown RBP18.31■□□□□ 0.52
GPNMB-203ENST00000409458 MTHFSDQ2M296 383 aaKnown RBP18.3■□□□□ 0.52
GPNMB-203ENST00000409458 KIAA0232Q92628 1395 aa18.3■□□□□ 0.52
GPNMB-203ENST00000409458 ERBB3P21860 1342 aa18.29■□□□□ 0.52
GPNMB-203ENST00000409458 FAM208AQ9UK61 1670 aaKnown RBP18.28■□□□□ 0.52
GPNMB-203ENST00000409458 DCTN1Q14203 1278 aa18.28■□□□□ 0.52
GPNMB-203ENST00000409458 ERICH6BQ5W0A0 696 aa18.28■□□□□ 0.52
GPNMB-203ENST00000409458 PLIN1O60240 522 aa18.27■□□□□ 0.52
GPNMB-203ENST00000409458 CALD1Q05682 793 aaKnown RBP18.27■□□□□ 0.52
GPNMB-203ENST00000409458 CHRNA2Q15822 529 aa18.27■□□□□ 0.52
GPNMB-203ENST00000409458 GAS2L2Q8NHY3 880 aa18.27■□□□□ 0.52
GPNMB-203ENST00000409458 LRRC37A3O60309 1634 aa18.26■□□□□ 0.51
GPNMB-203ENST00000409458 IFT57Q9NWB7 429 aa18.25■□□□□ 0.51
GPNMB-203ENST00000409458 ZNF853P0CG23 659 aa18.25■□□□□ 0.51
GPNMB-203ENST00000409458 EXOSC9Q06265 439 aaKnown RBP18.25■□□□□ 0.51
GPNMB-203ENST00000409458 MCM10Q7L590 875 aa18.25■□□□□ 0.51
GPNMB-203ENST00000409458 LAS1LQ9Y4W2 734 aaKnown RBP18.25■□□□□ 0.51
GPNMB-203ENST00000409458 COL22A1Q8NFW1 1626 aaPredicted RBP18.24■□□□□ 0.51
GPNMB-203ENST00000409458 BCAR3O75815 825 aa18.24■□□□□ 0.51
GPNMB-203ENST00000409458 PHLPP1O60346 1717 aa18.23■□□□□ 0.51
GPNMB-203ENST00000409458 COL16A1Q07092 1604 aaPredicted RBP18.23■□□□□ 0.51
GPNMB-203ENST00000409458 CRB1P82279 1406 aa18.23■□□□□ 0.51
GPNMB-203ENST00000409458 GNAI1P63096 354 aa18.22■□□□□ 0.51
GPNMB-203ENST00000409458 MAP3K5Q99683 1374 aa18.22■□□□□ 0.51
GPNMB-203ENST00000409458 RARSP54136 660 aaKnown RBP18.22■□□□□ 0.51
GPNMB-203ENST00000409458 HAP1P54257 671 aaPredicted RBP18.22■□□□□ 0.51
GPNMB-203ENST00000409458 CFAP44Q96MT7 982 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms