RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 PIK3C2AO00443 1686 aa31.79■■■□□ 2.68
DNMT3A-206ENST00000406659 MAP3K19Q56UN5 1328 aa31.78■■■□□ 2.68
DNMT3A-206ENST00000406659 CENPQQ7L2Z9 268 aaPredicted RBP31.78■■■□□ 2.68
DNMT3A-206ENST00000406659 TCERG1O14776 1098 aaKnown RBP31.77■■■□□ 2.68
DNMT3A-206ENST00000406659 SULT6B1Q6IMI4 303 aa31.76■■■□□ 2.68
DNMT3A-206ENST00000406659 C14orf37Q86TY3 774 aa31.76■■■□□ 2.68
DNMT3A-206ENST00000406659 KDM2BQ8NHM5 1336 aa31.76■■■□□ 2.67
DNMT3A-206ENST00000406659 SBNO1A3KN83 1393 aa31.76■■■□□ 2.67
DNMT3A-206ENST00000406659 PAK3O75914 559 aaPredicted RBP31.75■■■□□ 2.67
DNMT3A-206ENST00000406659 COG6Q9Y2V7 657 aa31.75■■■□□ 2.67
DNMT3A-206ENST00000406659 LAS1LQ9Y4W2 734 aaKnown RBP31.75■■■□□ 2.67
DNMT3A-206ENST00000406659 AMPHP49418 695 aa31.73■■■□□ 2.67
DNMT3A-206ENST00000406659 SMC4Q9NTJ3 1288 aa31.73■■■□□ 2.67
DNMT3A-206ENST00000406659 FLT4P35916 1363 aa31.73■■■□□ 2.67
DNMT3A-206ENST00000406659 AEBP1Q8IUX7 1158 aa31.73■■■□□ 2.67
DNMT3A-206ENST00000406659 ABTB2Q8N961 1025 aa31.73■■■□□ 2.67
DNMT3A-206ENST00000406659 GNAI1P63096 354 aa31.71■■■□□ 2.67
DNMT3A-206ENST00000406659 NUTM2GQ5VZR2 741 aa31.71■■■□□ 2.67
DNMT3A-206ENST00000406659 ZKSCAN2Q63HK3 967 aa31.71■■■□□ 2.67
DNMT3A-206ENST00000406659 THUMPD2Q9BTF0 503 aaKnown RBP31.71■■■□□ 2.67
DNMT3A-206ENST00000406659 IFT57Q9NWB7 429 aa31.71■■■□□ 2.67
DNMT3A-206ENST00000406659 MS4A1P11836 297 aa31.7■■■□□ 2.67
DNMT3A-206ENST00000406659 ESCO1Q5FWF5 840 aa31.69■■■□□ 2.66
DNMT3A-206ENST00000406659 DLG5Q8TDM6 1919 aa31.69■■■□□ 2.66
DNMT3A-206ENST00000406659 AAMPQ13685 434 aa31.68■■■□□ 2.66
DNMT3A-206ENST00000406659 SSH1Q8WYL5 1049 aa31.68■■■□□ 2.66
DNMT3A-206ENST00000406659 ARHGEF10O15013 1369 aa31.68■■■□□ 2.66
DNMT3A-206ENST00000406659 CLUAP1Q96AJ1 413 aa31.68■■■□□ 2.66
DNMT3A-206ENST00000406659 RGPD1P0DJD0 1748 aa31.68■■■□□ 2.66
DNMT3A-206ENST00000406659 NWD1Q149M9 1564 aa31.67■■■□□ 2.66
DNMT3A-206ENST00000406659 USP54Q70EL1 1684 aa31.67■■■□□ 2.66
DNMT3A-206ENST00000406659 RLBP1P12271 317 aa31.66■■■□□ 2.66
DNMT3A-206ENST00000406659 TNNQ9UQP3 1299 aa31.66■■■□□ 2.66
DNMT3A-206ENST00000406659 PSME1Q06323 249 aa31.66■■■□□ 2.66
DNMT3A-206ENST00000406659 PROSER2Q86WR7 435 aaPredicted RBP31.66■■■□□ 2.66
DNMT3A-206ENST00000406659 ZNF853P0CG23 659 aa31.64■■■□□ 2.66
DNMT3A-206ENST00000406659 KIF24Q5T7B8 1368 aa31.64■■■□□ 2.66
DNMT3A-206ENST00000406659 ALDH1L2Q3SY69 923 aa31.63■■■□□ 2.65
DNMT3A-206ENST00000406659 FTSJ3Q8IY81 847 aaKnown RBP31.63■■■□□ 2.65
DNMT3A-206ENST00000406659 DZIP1LQ8IYY4 767 aaKnown RBP31.63■■■□□ 2.65
DNMT3A-206ENST00000406659 ZNF428Q96B54 188 aa31.63■■■□□ 2.65
DNMT3A-206ENST00000406659 MARF1Q9Y4F3 1742 aaKnown RBP31.63■■■□□ 2.65
DNMT3A-206ENST00000406659 CFAP44Q96MT7 982 aa31.62■■■□□ 2.65
DNMT3A-206ENST00000406659 FAM83GA6ND36 823 aa31.61■■■□□ 2.65
DNMT3A-206ENST00000406659 MBIPQ9NS73 344 aa31.61■■■□□ 2.65
DNMT3A-206ENST00000406659 HOXC9P31274 260 aa31.59■■■□□ 2.65
DNMT3A-206ENST00000406659 KIF16BQ96L93 1317 aa31.59■■■□□ 2.65
DNMT3A-206ENST00000406659 IPO8O15397 1037 aaKnown RBP31.58■■■□□ 2.65
DNMT3A-206ENST00000406659 DCTN1Q14203 1278 aa31.58■■■□□ 2.65
DNMT3A-206ENST00000406659 MVPQ14764 893 aaKnown RBP31.58■■■□□ 2.65
DNMT3A-206ENST00000406659 NOB1Q9ULX3 412 aaKnown RBP31.58■■■□□ 2.65
DNMT3A-206ENST00000406659 ATF7IPQ6VMQ6 1270 aa31.58■■■□□ 2.65
DNMT3A-206ENST00000406659 EYA1Q99502 592 aa31.58■■■□□ 2.65
DNMT3A-206ENST00000406659 IGSF1Q8N6C5 1336 aa31.57■■■□□ 2.64
DNMT3A-206ENST00000406659 TRIM27P14373 513 aa31.56■■■□□ 2.64
DNMT3A-206ENST00000406659 VAMP4O75379 141 aa31.55■■■□□ 2.64
DNMT3A-206ENST00000406659 IGHDP01880 384 aa31.55■■■□□ 2.64
DNMT3A-206ENST00000406659 SKAP1Q86WV1 359 aa31.55■■■□□ 2.64
DNMT3A-206ENST00000406659 ORAI2Q96SN7 254 aa31.55■■■□□ 2.64
DNMT3A-206ENST00000406659 KDRP35968 1356 aa31.55■■■□□ 2.64
DNMT3A-206ENST00000406659 BRPF1P55201 1214 aaPredicted RBP31.53■■■□□ 2.64
DNMT3A-206ENST00000406659 C19orf44Q9H6X5 657 aa31.52■■■□□ 2.64
DNMT3A-206ENST00000406659 RTL1A6NKG5 1358 aa31.52■■■□□ 2.64
DNMT3A-206ENST00000406659 PDE4AP27815 886 aa31.51■■■□□ 2.64
DNMT3A-206ENST00000406659 TSPYL6Q8N831 410 aa31.51■■■□□ 2.64
DNMT3A-206ENST00000406659 FOXO3O43524 673 aa31.5■■■□□ 2.63
DNMT3A-206ENST00000406659 TWISTNBQ3B726 338 aaPredicted RBP31.5■■■□□ 2.63
DNMT3A-206ENST00000406659 MCM10Q7L590 875 aa31.5■■■□□ 2.63
DNMT3A-206ENST00000406659 KCNH5Q8NCM2 988 aa31.5■■■□□ 2.63
DNMT3A-206ENST00000406659 MTHFSDQ2M296 383 aaKnown RBP31.48■■■□□ 2.63
DNMT3A-206ENST00000406659 DDX19BQ9UMR2 479 aa31.48■■■□□ 2.63
DNMT3A-206ENST00000406659 ELL2O00472 640 aaPredicted RBP31.48■■■□□ 2.63
DNMT3A-206ENST00000406659 GAS2L2Q8NHY3 880 aa31.48■■■□□ 2.63
DNMT3A-206ENST00000406659 LTV1Q96GA3 475 aaPredicted RBP31.48■■■□□ 2.63
DNMT3A-206ENST00000406659 PCDHB15Q9Y5E8 787 aa31.48■■■□□ 2.63
DNMT3A-206ENST00000406659 ITPRIPQ8IWB1 547 aa31.47■■■□□ 2.63
DNMT3A-206ENST00000406659 MRPL50Q8N5N7 158 aaKnown RBP31.47■■■□□ 2.63
DNMT3A-206ENST00000406659 C8orf58Q8NAV2 365 aa31.47■■■□□ 2.63
DNMT3A-206ENST00000406659 RTF1Q92541 710 aaKnown RBP31.47■■■□□ 2.63
DNMT3A-206ENST00000406659 BACH2Q9BYV9 841 aa31.47■■■□□ 2.63
DNMT3A-206ENST00000406659 IP6K1Q92551 441 aa31.46■■■□□ 2.63
DNMT3A-206ENST00000406659 CHL1O00533 1208 aa31.45■■■□□ 2.63
DNMT3A-206ENST00000406659 NFAT5O94916 1531 aa31.45■■■□□ 2.63
DNMT3A-206ENST00000406659 LTN1O94822 1766 aa31.44■■■□□ 2.62
DNMT3A-206ENST00000406659 C1orf167Q5SNV9 1468 aa31.44■■■□□ 2.62
DNMT3A-206ENST00000406659 XPCQ01831 940 aaPredicted RBP31.44■■■□□ 2.62
DNMT3A-206ENST00000406659 RWDD1Q9H446 243 aaPredicted RBP31.44■■■□□ 2.62
DNMT3A-206ENST00000406659 TMEM57Q8N5G2 664 aa31.43■■■□□ 2.62
DNMT3A-206ENST00000406659 ATF3P18847 181 aa31.42■■■□□ 2.62
DNMT3A-206ENST00000406659 KRT28Q7Z3Y7 464 aa31.42■■■□□ 2.62
DNMT3A-206ENST00000406659 ARHGAP45Q92619 1136 aa31.42■■■□□ 2.62
DNMT3A-206ENST00000406659 KIF1AQ12756 1690 aa31.41■■■□□ 2.62
DNMT3A-206ENST00000406659 RGS3P49796 1198 aa31.4■■■□□ 2.62
DNMT3A-206ENST00000406659 HAP1P54257 671 aaPredicted RBP31.4■■■□□ 2.62
DNMT3A-206ENST00000406659 CRB1P82279 1406 aa31.4■■■□□ 2.62
DNMT3A-206ENST00000406659 TMEM94Q12767 1356 aa31.4■■■□□ 2.62
DNMT3A-206ENST00000406659 ZBTB7CA1YPR0 619 aa31.4■■■□□ 2.62
DNMT3A-206ENST00000406659 LMOD2Q6P5Q4 547 aa31.4■■■□□ 2.62
DNMT3A-206ENST00000406659 HTATSF1O43719 755 aaKnown RBP31.39■■■□□ 2.62
DNMT3A-206ENST00000406659 HSPA2P54652 639 aa31.39■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms