RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 ATP2B1P20020 1258 aa21.78■■□□□ 1.08
COL18A1-204ENST00000400337 RRP12Q5JTH9 1297 aaKnown RBP21.77■■□□□ 1.08
COL18A1-204ENST00000400337 IFT57Q9NWB7 429 aa21.77■■□□□ 1.08
COL18A1-204ENST00000400337 KLHL34Q8N239 644 aa21.77■■□□□ 1.08
COL18A1-204ENST00000400337 TMEM57Q8N5G2 664 aa21.77■■□□□ 1.08
COL18A1-204ENST00000400337 FAM43AQ8N2R8 423 aa21.77■■□□□ 1.08
COL18A1-204ENST00000400337 MBD3O95983 291 aa21.77■■□□□ 1.08
COL18A1-204ENST00000400337 MIS18AQ9NYP9 233 aa21.77■■□□□ 1.07
COL18A1-204ENST00000400337 FIBPO43427 364 aa21.76■■□□□ 1.07
COL18A1-204ENST00000400337 CD109Q6YHK3 1445 aa21.76■■□□□ 1.07
COL18A1-204ENST00000400337 ZC3H6P61129 1189 aaKnown RBP21.76■■□□□ 1.07
COL18A1-204ENST00000400337 CYP46A1Q9Y6A2 500 aa21.76■■□□□ 1.07
COL18A1-204ENST00000400337 CCDC43Q96MW1 224 aaKnown RBP21.75■■□□□ 1.07
COL18A1-204ENST00000400337 NAT10Q9H0A0 1025 aaKnown RBP21.75■■□□□ 1.07
COL18A1-204ENST00000400337 POGZQ7Z3K3 1410 aa21.75■■□□□ 1.07
COL18A1-204ENST00000400337 OLFM4Q6UX06 510 aa21.75■■□□□ 1.07
COL18A1-204ENST00000400337 IL1RAPL2Q9NP60 686 aa21.75■■□□□ 1.07
COL18A1-204ENST00000400337 MCM10Q7L590 875 aa21.74■■□□□ 1.07
COL18A1-204ENST00000400337 ADGRF5Q8IZF2 1346 aa21.74■■□□□ 1.07
COL18A1-204ENST00000400337 AACSQ86V21 672 aa21.74■■□□□ 1.07
COL18A1-204ENST00000400337 GNAT3A8MTJ3 354 aa21.73■■□□□ 1.07
COL18A1-204ENST00000400337 LAMC3Q9Y6N6 1575 aa21.73■■□□□ 1.07
COL18A1-204ENST00000400337 CUL7Q14999 1698 aa21.73■■□□□ 1.07
COL18A1-204ENST00000400337 PRM3Q9NNZ6 103 aa21.73■■□□□ 1.07
COL18A1-204ENST00000400337 DCTN1Q14203 1278 aa21.73■■□□□ 1.07
COL18A1-204ENST00000400337 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.73■■□□□ 1.07
COL18A1-204ENST00000400337 STK3Q13188 491 aa21.73■■□□□ 1.07
COL18A1-204ENST00000400337 RPAP2Q8IXW5 612 aaPredicted RBP21.73■■□□□ 1.07
COL18A1-204ENST00000400337 GRIN2AQ12879 1464 aa21.72■■□□□ 1.07
COL18A1-204ENST00000400337 KINO60870 393 aaKnown RBP21.72■■□□□ 1.07
COL18A1-204ENST00000400337 CEBPZQ03701 1054 aaKnown RBP21.72■■□□□ 1.07
COL18A1-204ENST00000400337 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.72■■□□□ 1.071e-7■■■■□ 26
COL18A1-204ENST00000400337 NUTM2BA6NNL0 878 aaPredicted RBP21.72■■□□□ 1.07
COL18A1-204ENST00000400337 NUTM2EB1AL46 878 aaPredicted RBP21.72■■□□□ 1.07
COL18A1-204ENST00000400337 K7ELQ4 463 aaPredicted RBP21.72■■□□□ 1.07
COL18A1-204ENST00000400337 NUTM2AQ8IVF1 878 aaPredicted RBP21.72■■□□□ 1.07
COL18A1-204ENST00000400337 FAM13BQ9NYF5 915 aa21.72■■□□□ 1.07
COL18A1-204ENST00000400337 DCAF8L1A6NGE4 600 aa21.72■■□□□ 1.07
COL18A1-204ENST00000400337 GPS2Q13227 327 aa21.72■■□□□ 1.07
COL18A1-204ENST00000400337 CCDC57Q2TAC2 916 aa21.72■■□□□ 1.07
COL18A1-204ENST00000400337 NCOA1Q15788 1441 aa21.71■■□□□ 1.07
COL18A1-204ENST00000400337 NME9Q86XW9 330 aa21.71■■□□□ 1.07
COL18A1-204ENST00000400337 ADGRL1O94910 1474 aa21.71■■□□□ 1.07
COL18A1-204ENST00000400337 KIF14Q15058 1648 aa21.7■■□□□ 1.06
COL18A1-204ENST00000400337 GNL3LQ9NVN8 582 aaKnown RBP21.7■■□□□ 1.06
COL18A1-204ENST00000400337 IKQ13123 557 aaPredicted RBP21.7■■□□□ 1.06
COL18A1-204ENST00000400337 DUSP27Q5VZP5 1158 aa21.7■■□□□ 1.06
COL18A1-204ENST00000400337 LETM1O95202 739 aaPredicted RBP21.7■■□□□ 1.06
COL18A1-204ENST00000400337 CWC22Q9HCG8 908 aaKnown RBP21.7■■□□□ 1.06
COL18A1-204ENST00000400337 TRIM5Q9C035 493 aa21.69■■□□□ 1.06
COL18A1-204ENST00000400337 CCDC39Q9UFE4 941 aa21.69■■□□□ 1.06
COL18A1-204ENST00000400337 SSH1Q8WYL5 1049 aa21.69■■□□□ 1.06
COL18A1-204ENST00000400337 SLC3A2P08195 630 aaKnown RBP21.69■■□□□ 1.06
COL18A1-204ENST00000400337 FBXO31Q5XUX0 539 aaPredicted RBP21.69■■□□□ 1.06
COL18A1-204ENST00000400337 EXOC6BQ9Y2D4 811 aa21.69■■□□□ 1.06
COL18A1-204ENST00000400337 BICRAQ9NZM4 1560 aa21.69■■□□□ 1.06
COL18A1-204ENST00000400337 MAP3K1Q13233 1512 aa21.69■■□□□ 1.06
COL18A1-204ENST00000400337 FKBP4Q02790 459 aaKnown RBP eCLIP21.68■■□□□ 1.062e-6■■■■□ 22.9
COL18A1-204ENST00000400337 STK38Q15208 465 aa21.68■■□□□ 1.06
COL18A1-204ENST00000400337 C20orf194Q5TEA3 1177 aa21.68■■□□□ 1.06
COL18A1-204ENST00000400337 PDILTQ8N807 584 aa21.68■■□□□ 1.06
COL18A1-204ENST00000400337 RARSP54136 660 aaKnown RBP21.68■■□□□ 1.06
COL18A1-204ENST00000400337 CWC27Q6UX04 472 aaKnown RBP21.68■■□□□ 1.06
COL18A1-204ENST00000400337 STK11IPQ8N1F8 1099 aa21.68■■□□□ 1.06
COL18A1-204ENST00000400337 KCNH5Q8NCM2 988 aa21.68■■□□□ 1.06
COL18A1-204ENST00000400337 PHF23Q9BUL5 403 aaPredicted RBP21.68■■□□□ 1.06
COL18A1-204ENST00000400337 TSPY26PQ9H489 355 aa21.68■■□□□ 1.06
COL18A1-204ENST00000400337 IDI1Q13907 227 aa21.68■■□□□ 1.06
COL18A1-204ENST00000400337 FMNL2Q96PY5 1086 aa21.68■■□□□ 1.06
COL18A1-204ENST00000400337 MPHOSPH8Q99549 860 aa21.68■■□□□ 1.06
COL18A1-204ENST00000400337 ZNF396Q96N95 335 aaPredicted RBP21.67■■□□□ 1.06
COL18A1-204ENST00000400337 ANKRD1Q15327 319 aa21.67■■□□□ 1.06
COL18A1-204ENST00000400337 EMILIN1Q9Y6C2 1016 aa21.67■■□□□ 1.06
COL18A1-204ENST00000400337 NAP1L1P55209 391 aaKnown RBP21.66■■□□□ 1.06
COL18A1-204ENST00000400337 CEP126Q9P2H0 1117 aa21.66■■□□□ 1.06
COL18A1-204ENST00000400337 NACAP1Q9BZK3 213 aa21.65■■□□□ 1.06
COL18A1-204ENST00000400337 NUTM1Q86Y26 1132 aa21.65■■□□□ 1.06
COL18A1-204ENST00000400337 WDR33Q9C0J8 1336 aaKnown RBP21.64■■□□□ 1.06
COL18A1-204ENST00000400337 BLOC1S2Q6QNY1 142 aa21.64■■□□□ 1.05
COL18A1-204ENST00000400337 MNS1Q8NEH6 495 aa21.64■■□□□ 1.05
COL18A1-204ENST00000400337 BCL11BQ9C0K0 894 aaPredicted RBP21.64■■□□□ 1.05
COL18A1-204ENST00000400337 AEBP1Q8IUX7 1158 aa21.64■■□□□ 1.05
COL18A1-204ENST00000400337 CCDC85AQ96PX6 553 aaPredicted RBP21.64■■□□□ 1.05
COL18A1-204ENST00000400337 USHBP1Q8N6Y0 703 aa21.63■■□□□ 1.05
COL18A1-204ENST00000400337 LARP1BQ659C4 914 aaKnown RBP21.63■■□□□ 1.05
COL18A1-204ENST00000400337 JAKMIP1Q96N16 626 aaKnown RBP21.63■■□□□ 1.05
COL18A1-204ENST00000400337 SMC2O95347 1197 aa21.62■■□□□ 1.05
COL18A1-204ENST00000400337 VSIG10Q8N0Z9 540 aa21.62■■□□□ 1.05
COL18A1-204ENST00000400337 R3HCC1Q9Y3T6 440 aaKnown RBP21.62■■□□□ 1.05
COL18A1-204ENST00000400337 WASLO00401 505 aaPredicted RBP21.62■■□□□ 1.05
COL18A1-204ENST00000400337 ALDH1L2Q3SY69 923 aa21.61■■□□□ 1.05
COL18A1-204ENST00000400337 PDRG1Q9NUG6 133 aa21.61■■□□□ 1.05
COL18A1-204ENST00000400337 SKAP1Q86WV1 359 aa21.61■■□□□ 1.05
COL18A1-204ENST00000400337 ZSCAN25Q6NSZ9 544 aa21.61■■□□□ 1.05
COL18A1-204ENST00000400337 ZNF771Q7L3S4 317 aaPredicted RBP21.61■■□□□ 1.05
COL18A1-204ENST00000400337 RPRD2Q5VT52 1461 aaKnown RBP21.6■■□□□ 1.05
COL18A1-204ENST00000400337 ABCC11Q96J66 1382 aa21.6■■□□□ 1.05
COL18A1-204ENST00000400337 AMOTL2Q9Y2J4 779 aa21.6■■□□□ 1.05
COL18A1-204ENST00000400337 EPS15P42566 896 aa21.6■■□□□ 1.05
COL18A1-204ENST00000400337 TRIM22Q8IYM9 498 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms