RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ERCC6L2Q5T890 1561 aa22.62■■□□□ 1.21
USP48-204ENST00000400301 TRPM2O94759 1503 aa22.62■■□□□ 1.21
USP48-204ENST00000400301 IFIT2P09913 472 aaKnown RBP22.62■■□□□ 1.21
USP48-204ENST00000400301 CROCC2H7BZ55 1655 aa22.61■■□□□ 1.21
USP48-204ENST00000400301 UGGT1Q9NYU2 1555 aa22.61■■□□□ 1.21
USP48-204ENST00000400301 ERVK-7P63135 1459 aa22.61■■□□□ 1.21
USP48-204ENST00000400301 RUFY2Q8WXA3 655 aa22.61■■□□□ 1.21
USP48-204ENST00000400301 SBNO2Q9Y2G9 1366 aa22.61■■□□□ 1.21
USP48-204ENST00000400301 NEXNQ0ZGT2 675 aa22.6■■□□□ 1.21
USP48-204ENST00000400301 PHACTR3Q96KR7 559 aa22.6■■□□□ 1.21
USP48-204ENST00000400301 HSP90AB4PQ58FF6 505 aa22.59■■□□□ 1.21
USP48-204ENST00000400301 TRMT2AQ8IZ69 625 aaKnown RBP22.59■■□□□ 1.21
USP48-204ENST00000400301 ERC2O15083 957 aa22.59■■□□□ 1.21
USP48-204ENST00000400301 SMARCA5O60264 1052 aaPredicted RBP22.59■■□□□ 1.21
USP48-204ENST00000400301 ESCO1Q5FWF5 840 aa22.58■■□□□ 1.21
USP48-204ENST00000400301 BMP2KLQ5H9B9 411 aa22.58■■□□□ 1.21
USP48-204ENST00000400301 LRRCC1Q9C099 1032 aa22.58■■□□□ 1.21
USP48-204ENST00000400301 CIZ1Q9ULV3 898 aaPredicted RBP22.58■■□□□ 1.21
USP48-204ENST00000400301 EXOC6BQ9Y2D4 811 aa22.58■■□□□ 1.21
USP48-204ENST00000400301 YTHDC2Q9H6S0 1430 aaKnown RBP22.58■■□□□ 1.2
USP48-204ENST00000400301 DDX58O95786 925 aaKnown RBP22.58■■□□□ 1.2
USP48-204ENST00000400301 NUCB1Q02818 461 aa22.58■■□□□ 1.2
USP48-204ENST00000400301 RSPH6AQ9H0K4 717 aa22.58■■□□□ 1.2
USP48-204ENST00000400301 CCDC9Q9Y3X0 531 aaKnown RBP22.58■■□□□ 1.2
USP48-204ENST00000400301 PHF14O94880 888 aa22.57■■□□□ 1.2
USP48-204ENST00000400301 AIMP1Q12904 312 aaKnown RBP22.57■■□□□ 1.2
USP48-204ENST00000400301 F6X3S4 739 aa22.57■■□□□ 1.2
USP48-204ENST00000400301 CHD1O14646 1710 aa22.57■■□□□ 1.2
USP48-204ENST00000400301 TSPYL6Q8N831 410 aa22.56■■□□□ 1.2
USP48-204ENST00000400301 ARHGAP45Q92619 1136 aa22.56■■□□□ 1.2
USP48-204ENST00000400301 TRPM1Q7Z4N2 1603 aa22.56■■□□□ 1.2
USP48-204ENST00000400301 CEBPAP49715 358 aaPredicted RBP22.56■■□□□ 1.2
USP48-204ENST00000400301 KDM5AP29375 1690 aaKnown RBP22.56■■□□□ 1.2
USP48-204ENST00000400301 KIAA2012Q0VF49 1180 aa22.56■■□□□ 1.2
USP48-204ENST00000400301 G3BP1Q13283 466 aaKnown RBP eCLIP22.56■■□□□ 1.2
USP48-204ENST00000400301 C8orf58Q8NAV2 365 aa22.56■■□□□ 1.2
USP48-204ENST00000400301 TRIM35Q9UPQ4 493 aa22.56■■□□□ 1.2
USP48-204ENST00000400301 HSP90B1P14625 803 aaKnown RBP22.56■■□□□ 1.2
USP48-204ENST00000400301 GORABQ5T7V8 394 aa22.56■■□□□ 1.2
USP48-204ENST00000400301 ACEP12821 1306 aa22.55■■□□□ 1.2
USP48-204ENST00000400301 IQGAP3Q86VI3 1631 aa22.55■■□□□ 1.2
USP48-204ENST00000400301 ZKSCAN1P17029 563 aaPredicted RBP22.55■■□□□ 1.2
USP48-204ENST00000400301 ZBTB40Q9NUA8 1239 aa22.55■■□□□ 1.2
USP48-204ENST00000400301 AMOTL2Q9Y2J4 779 aa22.55■■□□□ 1.2
USP48-204ENST00000400301 CSPP1Q1MSJ5 1256 aa22.55■■□□□ 1.2
USP48-204ENST00000400301 POGZQ7Z3K3 1410 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 VAMP4O75379 141 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 DRC7Q8IY82 874 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 PLXNC1O60486 1568 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 RIMS2Q9UQ26 1411 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 HSP90AB2PQ58FF8 381 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 TBC1D9Q6ZT07 1266 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 TTC5Q8N0Z6 440 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 MRPL50Q8N5N7 158 aaKnown RBP22.54■■□□□ 1.2
USP48-204ENST00000400301 SYNMO15061 1565 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 PPIP5K1Q6PFW1 1433 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 AEBP1Q8IUX7 1158 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 ATP6V1DQ9Y5K8 247 aa22.54■■□□□ 1.2
USP48-204ENST00000400301 SMC5Q8IY18 1101 aa22.53■■□□□ 1.2
USP48-204ENST00000400301 CAVIN1Q6NZI2 390 aaKnown RBP22.53■■□□□ 1.2
USP48-204ENST00000400301 CLASRPQ8N2M8 674 aaKnown RBP22.53■■□□□ 1.2
USP48-204ENST00000400301 RAPGEF4Q8WZA2 1011 aa22.53■■□□□ 1.2
USP48-204ENST00000400301 SRCIN1Q9C0H9 1055 aa22.53■■□□□ 1.2
USP48-204ENST00000400301 NCKAP5LQ9HCH0 1330 aa22.53■■□□□ 1.2
USP48-204ENST00000400301 GNAT3A8MTJ3 354 aa22.53■■□□□ 1.2
USP48-204ENST00000400301 ZCCHC11Q5TAX3 1644 aaKnown RBP22.52■■□□□ 1.2
USP48-204ENST00000400301 PLEKHO1Q53GL0 409 aaPredicted RBP22.52■■□□□ 1.2
USP48-204ENST00000400301 IL1RAPL2Q9NP60 686 aa22.52■■□□□ 1.2
USP48-204ENST00000400301 NLRP2Q9NX02 1062 aa22.52■■□□□ 1.2
USP48-204ENST00000400301 ZNF530Q6P9A1 599 aaPredicted RBP22.51■■□□□ 1.19
USP48-204ENST00000400301 PRPF40AO75400 957 aaKnown RBP22.51■■□□□ 1.19
USP48-204ENST00000400301 NASPP49321 788 aaPredicted RBP22.51■■□□□ 1.19
USP48-204ENST00000400301 UNC13BO14795 1591 aa22.5■■□□□ 1.19
USP48-204ENST00000400301 CDC42BPBQ9Y5S2 1711 aa22.5■■□□□ 1.19
USP48-204ENST00000400301 RIC3Q7Z5B4 369 aa22.5■■□□□ 1.19
USP48-204ENST00000400301 CNTROBQ8N137 903 aa22.5■■□□□ 1.19
USP48-204ENST00000400301 TAF7LQ5H9L4 462 aa22.5■■□□□ 1.19
USP48-204ENST00000400301 SMC3Q9UQE7 1217 aa22.5■■□□□ 1.19
USP48-204ENST00000400301 MYOM2P54296 1465 aa22.5■■□□□ 1.19
USP48-204ENST00000400301 TTC21BQ7Z4L5 1316 aa22.5■■□□□ 1.19
USP48-204ENST00000400301 MCM2P49736 904 aa22.49■■□□□ 1.19
USP48-204ENST00000400301 HTATSF1O43719 755 aaKnown RBP22.49■■□□□ 1.19
USP48-204ENST00000400301 ZFYVE16Q7Z3T8 1539 aa22.48■■□□□ 1.19
USP48-204ENST00000400301 CWC22Q9HCG8 908 aaKnown RBP22.48■■□□□ 1.19
USP48-204ENST00000400301 ZFYVE9O95405 1425 aa22.48■■□□□ 1.19
USP48-204ENST00000400301 GRPEL1Q9HAV7 217 aa22.48■■□□□ 1.19
USP48-204ENST00000400301 SRGAP3O43295 1099 aa22.47■■□□□ 1.19
USP48-204ENST00000400301 EIF4A2Q14240 407 aaKnown RBP22.47■■□□□ 1.19
USP48-204ENST00000400301 PTPRCP08575 1304 aa22.47■■□□□ 1.19
USP48-204ENST00000400301 CHAF1AQ13111 956 aaPredicted RBP22.46■■□□□ 1.19
USP48-204ENST00000400301 MAP4K4O95819 1239 aaPredicted RBP22.46■■□□□ 1.19
USP48-204ENST00000400301 USHBP1Q8N6Y0 703 aa22.46■■□□□ 1.19
USP48-204ENST00000400301 VPS37CA5D8V6 355 aaPredicted RBP22.46■■□□□ 1.19
USP48-204ENST00000400301 FAM43AQ8N2R8 423 aa22.46■■□□□ 1.19
USP48-204ENST00000400301 TNRQ92752 1358 aa22.46■■□□□ 1.19
USP48-204ENST00000400301 KRT24Q2M2I5 525 aa22.45■■□□□ 1.18
USP48-204ENST00000400301 TNPO1Q92973 898 aaKnown RBP22.45■■□□□ 1.18
USP48-204ENST00000400301 MEIS3Q99687 375 aa22.45■■□□□ 1.18
USP48-204ENST00000400301 TAF7Q15545 349 aaPredicted RBP22.44■■□□□ 1.18
USP48-204ENST00000400301 NCBP3Q53F19 620 aaKnown RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms