RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 POLR3AO14802 1390 aaPredicted RBP10.36□□□□□ -0.75
PTPRD-204ENST00000397606 RIC3Q7Z5B4 369 aa10.36□□□□□ -0.75
PTPRD-204ENST00000397606 GPATCH3Q96I76 525 aa10.36□□□□□ -0.75
PTPRD-204ENST00000397606 BTBD11A6QL63 1104 aa10.35□□□□□ -0.75
PTPRD-204ENST00000397606 E9PCH4 1651 aa10.35□□□□□ -0.75
PTPRD-204ENST00000397606 SYNMO15061 1565 aa10.35□□□□□ -0.75
PTPRD-204ENST00000397606 MSH5O43196 834 aa10.35□□□□□ -0.75
PTPRD-204ENST00000397606 FBLN1P23142 703 aa10.35□□□□□ -0.75
PTPRD-204ENST00000397606 BECN1Q14457 450 aa10.35□□□□□ -0.75
PTPRD-204ENST00000397606 CRBNQ96SW2 442 aa10.35□□□□□ -0.75
PTPRD-204ENST00000397606 ROBO2Q9HCK4 1378 aa10.35□□□□□ -0.75
PTPRD-204ENST00000397606 CLTCQ00610 1675 aaKnown RBP10.35□□□□□ -0.75
PTPRD-204ENST00000397606 GORABQ5T7V8 394 aa10.35□□□□□ -0.75
PTPRD-204ENST00000397606 HMGB2P26583 209 aaKnown RBP10.34□□□□□ -0.75
PTPRD-204ENST00000397606 PPRC1Q5VV67 1664 aaKnown RBP10.34□□□□□ -0.75
PTPRD-204ENST00000397606 ZC3H13Q5T200 1668 aaKnown RBP10.34□□□□□ -0.75
PTPRD-204ENST00000397606 EXOC5O00471 708 aa10.34□□□□□ -0.75
PTPRD-204ENST00000397606 AIMP1Q12904 312 aaKnown RBP10.34□□□□□ -0.75
PTPRD-204ENST00000397606 DDRGK1Q96HY6 314 aa10.34□□□□□ -0.75
PTPRD-204ENST00000397606 IFT57Q9NWB7 429 aa10.34□□□□□ -0.75
PTPRD-204ENST00000397606 EXOC6Q8TAG9 804 aa10.34□□□□□ -0.75
PTPRD-204ENST00000397606 ARHGEF10O15013 1369 aa10.34□□□□□ -0.75
PTPRD-204ENST00000397606 KCNJ4P48050 445 aa10.33□□□□□ -0.76
PTPRD-204ENST00000397606 SLFN5Q08AF3 891 aa10.33□□□□□ -0.76
PTPRD-204ENST00000397606 TAF7Q15545 349 aaPredicted RBP10.33□□□□□ -0.76
PTPRD-204ENST00000397606 MCM10Q7L590 875 aa10.33□□□□□ -0.76
PTPRD-204ENST00000397606 CABLES1Q8TDN4 633 aa10.33□□□□□ -0.76
PTPRD-204ENST00000397606 IFNL2Q8IZJ0 200 aa10.33□□□□□ -0.76
PTPRD-204ENST00000397606 EIF4A2Q14240 407 aaKnown RBP10.33□□□□□ -0.76
PTPRD-204ENST00000397606 CENPQQ7L2Z9 268 aaPredicted RBP10.33□□□□□ -0.76
PTPRD-204ENST00000397606 MAP3K19Q56UN5 1328 aa10.33□□□□□ -0.76
PTPRD-204ENST00000397606 IP6K1Q92551 441 aa10.32□□□□□ -0.76
PTPRD-204ENST00000397606 SLC4A2P04920 1241 aa10.32□□□□□ -0.76
PTPRD-204ENST00000397606 TMOD3Q9NYL9 352 aa10.32□□□□□ -0.76
PTPRD-204ENST00000397606 THUMPD2Q9BTF0 503 aaKnown RBP10.31□□□□□ -0.76
PTPRD-204ENST00000397606 SF3B2Q13435 895 aaKnown RBP10.31□□□□□ -0.76
PTPRD-204ENST00000397606 KIF6Q6ZMV9 814 aa10.31□□□□□ -0.76
PTPRD-204ENST00000397606 PDE3AQ14432 1141 aa10.31□□□□□ -0.76
PTPRD-204ENST00000397606 GNAI3P08754 354 aa10.31□□□□□ -0.76
PTPRD-204ENST00000397606 HOXC9P31274 260 aa10.31□□□□□ -0.76
PTPRD-204ENST00000397606 DCTN1Q14203 1278 aa10.31□□□□□ -0.76
PTPRD-204ENST00000397606 KDM5AP29375 1690 aaKnown RBP10.31□□□□□ -0.76
PTPRD-204ENST00000397606 HSP90B1P14625 803 aaKnown RBP10.3□□□□□ -0.76
PTPRD-204ENST00000397606 MPRIPQ6WCQ1 1025 aa10.3□□□□□ -0.76
PTPRD-204ENST00000397606 MCCP23508 829 aa10.3□□□□□ -0.76
PTPRD-204ENST00000397606 SBNO1A3KN83 1393 aa10.3□□□□□ -0.76
PTPRD-204ENST00000397606 UBTFL1P0CB47 393 aaPredicted RBP10.3□□□□□ -0.76
PTPRD-204ENST00000397606 PANK1Q8TE04 598 aa10.3□□□□□ -0.76
PTPRD-204ENST00000397606 KIAA1211Q6ZU35 1233 aa10.29□□□□□ -0.76
PTPRD-204ENST00000397606 PTPRMP28827 1452 aa10.29□□□□□ -0.76
PTPRD-204ENST00000397606 STARD3NLO95772 234 aa10.29□□□□□ -0.76
PTPRD-204ENST00000397606 ZNF335Q9H4Z2 1342 aaPredicted RBP10.29□□□□□ -0.76
PTPRD-204ENST00000397606 ALKQ9UM73 1620 aa10.29□□□□□ -0.76
PTPRD-204ENST00000397606 IL16Q14005 1332 aa10.29□□□□□ -0.76
PTPRD-204ENST00000397606 HSP90AB4PQ58FF6 505 aa10.29□□□□□ -0.76
PTPRD-204ENST00000397606 ATP7BP35670 1465 aa10.28□□□□□ -0.76
PTPRD-204ENST00000397606 C8orf37Q96NL8 207 aa10.28□□□□□ -0.76
PTPRD-204ENST00000397606 NOB1Q9ULX3 412 aaKnown RBP10.28□□□□□ -0.76
PTPRD-204ENST00000397606 ANKRD45Q5TZF3 282 aa10.28□□□□□ -0.76
PTPRD-204ENST00000397606 DUSP27Q5VZP5 1158 aa10.28□□□□□ -0.76
PTPRD-204ENST00000397606 ZCRB1Q8TBF4 217 aaKnown RBP10.28□□□□□ -0.76
PTPRD-204ENST00000397606 HTATSF1O43719 755 aaKnown RBP10.28□□□□□ -0.76
PTPRD-204ENST00000397606 CCT4P50991 539 aaKnown RBP10.28□□□□□ -0.76
PTPRD-204ENST00000397606 ATF7IPQ6VMQ6 1270 aa10.28□□□□□ -0.76
PTPRD-204ENST00000397606 EYA1Q99502 592 aa10.28□□□□□ -0.76
PTPRD-204ENST00000397606 BCAR3O75815 825 aa10.27□□□□□ -0.76
PTPRD-204ENST00000397606 MIS18AQ9NYP9 233 aa10.27□□□□□ -0.76
PTPRD-204ENST00000397606 FRMPD1Q5SYB0 1578 aa10.27□□□□□ -0.77
PTPRD-204ENST00000397606 FGD1P98174 961 aa10.27□□□□□ -0.77
PTPRD-204ENST00000397606 TRIM6-TRIM34B2RNG4 842 aa10.27□□□□□ -0.77
PTPRD-204ENST00000397606 G3V3G9 751 aa10.27□□□□□ -0.77
PTPRD-204ENST00000397606 IL2RBP14784 551 aa10.27□□□□□ -0.77
PTPRD-204ENST00000397606 DCAF8Q5TAQ9 597 aa10.27□□□□□ -0.77
PTPRD-204ENST00000397606 AEBP1Q8IUX7 1158 aa10.27□□□□□ -0.77
PTPRD-204ENST00000397606 G3BP1Q13283 466 aaKnown RBP eCLIP10.27□□□□□ -0.77
PTPRD-204ENST00000397606 CCDC27Q2M243 656 aa10.27□□□□□ -0.77
PTPRD-204ENST00000397606 AKAP4Q5JQC9 854 aa10.27□□□□□ -0.77
PTPRD-204ENST00000397606 FANCIQ9NVI1 1328 aa10.26□□□□□ -0.77
PTPRD-204ENST00000397606 PTCD1O75127 700 aaKnown RBP10.26□□□□□ -0.77
PTPRD-204ENST00000397606 ANKARQ7Z5J8 1434 aa10.26□□□□□ -0.77
PTPRD-204ENST00000397606 ALDH1L2Q3SY69 923 aa10.26□□□□□ -0.77
PTPRD-204ENST00000397606 SRCIN1Q9C0H9 1055 aa10.26□□□□□ -0.77
PTPRD-204ENST00000397606 FRAT2O75474 233 aaPredicted RBP10.26□□□□□ -0.77
PTPRD-204ENST00000397606 DDX17Q92841 729 aaKnown RBP10.26□□□□□ -0.77
PTPRD-204ENST00000397606 FMNL2Q96PY5 1086 aa10.26□□□□□ -0.77
PTPRD-204ENST00000397606 MYL6BP14649 208 aa10.26□□□□□ -0.77
PTPRD-204ENST00000397606 BTG4Q9NY30 223 aa10.25□□□□□ -0.77
PTPRD-204ENST00000397606 PRR36Q9H6K5 1346 aa10.25□□□□□ -0.77
PTPRD-204ENST00000397606 RICTORQ6R327 1708 aa10.25□□□□□ -0.77
PTPRD-204ENST00000397606 TRPM1Q7Z4N2 1603 aa10.25□□□□□ -0.77
PTPRD-204ENST00000397606 NKTRP30414 1462 aaKnown RBP10.25□□□□□ -0.77
PTPRD-204ENST00000397606 MADDQ8WXG6 1647 aa10.25□□□□□ -0.77
PTPRD-204ENST00000397606 TEX13AQ9BXU3 409 aaPredicted RBP10.25□□□□□ -0.77
PTPRD-204ENST00000397606 VWDEQ8N2E2 1590 aa10.25□□□□□ -0.77
PTPRD-204ENST00000397606 SPATA31D1Q6ZQQ2 1576 aa10.24□□□□□ -0.77
PTPRD-204ENST00000397606 REREQ9P2R6 1566 aa10.24□□□□□ -0.77
PTPRD-204ENST00000397606 SETBP1Q9Y6X0 1596 aa10.24□□□□□ -0.77
PTPRD-204ENST00000397606 IL13P35225 146 aa10.24□□□□□ -0.77
PTPRD-204ENST00000397606 DDB1Q16531 1140 aa10.24□□□□□ -0.77
PTPRD-204ENST00000397606 CDCA7Q9BWT1 371 aaPredicted RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms