RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 USP35Q9P2H5 1018 aa7.06□□□□□ -1.28
VPS41-203ENST00000395969 WNK3Q9BYP7 1800 aa7.05□□□□□ -1.28
VPS41-203ENST00000395969 TMEM132EQ6IEE7 984 aa7.05□□□□□ -1.28
VPS41-203ENST00000395969 ANP32AP39687 249 aaKnown RBP7.05□□□□□ -1.28
VPS41-203ENST00000395969 PNNQ9H307 717 aaKnown RBP7.05□□□□□ -1.28
VPS41-203ENST00000395969 SLFN5Q08AF3 891 aa7.04□□□□□ -1.28
VPS41-203ENST00000395969 HDGFL2Q7Z4V5 671 aaPredicted RBP7.04□□□□□ -1.28
VPS41-203ENST00000395969 ESF1Q9H501 851 aaKnown RBP7.04□□□□□ -1.28
VPS41-203ENST00000395969 ZBTB47Q9UFB7 747 aaPredicted RBP7.04□□□□□ -1.28
VPS41-203ENST00000395969 ZNF428Q96B54 188 aa7.04□□□□□ -1.28
VPS41-203ENST00000395969 SLC12A5Q9H2X9 1139 aa7.04□□□□□ -1.28
VPS41-203ENST00000395969 PAPPAQ13219 1627 aa7.04□□□□□ -1.28
VPS41-203ENST00000395969 SBNO1A3KN83 1393 aa7.03□□□□□ -1.28
VPS41-203ENST00000395969 SOS1Q07889 1333 aaPredicted RBP7.03□□□□□ -1.28
VPS41-203ENST00000395969 TTC21BQ7Z4L5 1316 aa7.03□□□□□ -1.28
VPS41-203ENST00000395969 DUSP27Q5VZP5 1158 aa7.03□□□□□ -1.28
VPS41-203ENST00000395969 RUNDC1Q96C34 613 aa7.03□□□□□ -1.28
VPS41-203ENST00000395969 USP19O94966 1318 aa7.03□□□□□ -1.28
VPS41-203ENST00000395969 KCNA6P17658 529 aa7.03□□□□□ -1.28
VPS41-203ENST00000395969 PXDNQ92626 1479 aa7.03□□□□□ -1.28
VPS41-203ENST00000395969 AHDC1Q5TGY3 1603 aaPredicted RBP7.02□□□□□ -1.29
VPS41-203ENST00000395969 MRC1P22897 1456 aa7.02□□□□□ -1.29
VPS41-203ENST00000395969 E9PSI1 815 aa7.02□□□□□ -1.29
VPS41-203ENST00000395969 FCHSD2O94868 740 aa7.02□□□□□ -1.29
VPS41-203ENST00000395969 TXNDC2Q86VQ3 553 aa7.02□□□□□ -1.29
VPS41-203ENST00000395969 NUDT16Q96DE0 195 aaKnown RBP7.02□□□□□ -1.29
VPS41-203ENST00000395969 ADAMTS8Q9UP79 889 aa7.02□□□□□ -1.29
VPS41-203ENST00000395969 ZNF831Q5JPB2 1677 aa7.01□□□□□ -1.29
VPS41-203ENST00000395969 ANKLE2Q86XL3 938 aa7.01□□□□□ -1.29
VPS41-203ENST00000395969 CFAP53Q96M91 514 aa7.01□□□□□ -1.29
VPS41-203ENST00000395969 BABAM1Q9NWV8 329 aa7.01□□□□□ -1.29
VPS41-203ENST00000395969 A0A0U1RQG5 324 aaPredicted RBP7.01□□□□□ -1.29
VPS41-203ENST00000395969 IGSF3O75054 1194 aa7.01□□□□□ -1.29
VPS41-203ENST00000395969 IL13P35225 146 aa7□□□□□ -1.29
VPS41-203ENST00000395969 SCN11AQ9UI33 1791 aa7□□□□□ -1.29
VPS41-203ENST00000395969 MORC1Q86VD1 984 aa7□□□□□ -1.29
VPS41-203ENST00000395969 LAS1LQ9Y4W2 734 aaKnown RBP7□□□□□ -1.29
VPS41-203ENST00000395969 LRP6O75581 1613 aa7□□□□□ -1.29
VPS41-203ENST00000395969 SHANK3Q9BYB0 1731 aa7□□□□□ -1.29
VPS41-203ENST00000395969 CABP2Q9NPB3 220 aa7□□□□□ -1.29
VPS41-203ENST00000395969 POGKQ9P215 609 aa7□□□□□ -1.29
VPS41-203ENST00000395969 UBR2Q8IWV8 1755 aa7□□□□□ -1.29
VPS41-203ENST00000395969 ZNF853P0CG23 659 aa6.99□□□□□ -1.29
VPS41-203ENST00000395969 POLKQ9UBT6 870 aa6.99□□□□□ -1.29
VPS41-203ENST00000395969 BRPF3Q9ULD4 1205 aa6.99□□□□□ -1.29
VPS41-203ENST00000395969 AMOTL2Q9Y2J4 779 aa6.99□□□□□ -1.29
VPS41-203ENST00000395969 C1orf167Q5SNV9 1468 aa6.99□□□□□ -1.29
VPS41-203ENST00000395969 HTATSF1O43719 755 aaKnown RBP6.99□□□□□ -1.29
VPS41-203ENST00000395969 CHGAP10645 457 aaKnown RBP6.99□□□□□ -1.29
VPS41-203ENST00000395969 RSPH6AQ9H0K4 717 aa6.99□□□□□ -1.29
VPS41-203ENST00000395969 LAMB4A4D0S4 1761 aa6.99□□□□□ -1.29
VPS41-203ENST00000395969 KIAA0232Q92628 1395 aa6.99□□□□□ -1.29
VPS41-203ENST00000395969 RRP1P56182 461 aaKnown RBP6.98□□□□□ -1.29
VPS41-203ENST00000395969 STAG3Q9UJ98 1225 aa6.98□□□□□ -1.29
VPS41-203ENST00000395969 CPDO75976 1380 aa6.98□□□□□ -1.29
VPS41-203ENST00000395969 FLT4P35916 1363 aa6.98□□□□□ -1.29
VPS41-203ENST00000395969 GOLGA2Q08379 1002 aa6.98□□□□□ -1.29
VPS41-203ENST00000395969 CC2D1BQ5T0F9 858 aaKnown RBP6.98□□□□□ -1.29
VPS41-203ENST00000395969 WWC1Q8IX03 1113 aa6.98□□□□□ -1.29
VPS41-203ENST00000395969 CABP1Q9NZU7 370 aa6.98□□□□□ -1.29
VPS41-203ENST00000395969 PXDNLA1KZ92 1463 aa6.98□□□□□ -1.29
VPS41-203ENST00000395969 GLI3P10071 1580 aa6.98□□□□□ -1.29
VPS41-203ENST00000395969 PDE3AQ14432 1141 aa6.98□□□□□ -1.29
VPS41-203ENST00000395969 TUBGCP6Q96RT7 1819 aa6.97□□□□□ -1.29
VPS41-203ENST00000395969 NEFMP07197 916 aa6.97□□□□□ -1.29
VPS41-203ENST00000395969 WDR43Q15061 677 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS41-203ENST00000395969 IGSF1Q8N6C5 1336 aa6.97□□□□□ -1.29
VPS41-203ENST00000395969 LTBP4Q8N2S1 1624 aa6.97□□□□□ -1.29
VPS41-203ENST00000395969 MTHFSP49914 203 aa6.97□□□□□ -1.29
VPS41-203ENST00000395969 WAPLQ7Z5K2 1190 aa6.97□□□□□ -1.29
VPS41-203ENST00000395969 CHMP4AQ9BY43 222 aa6.97□□□□□ -1.29
VPS41-203ENST00000395969 PPM1GO15355 546 aaPredicted RBP6.96□□□□□ -1.29
VPS41-203ENST00000395969 CRB1P82279 1406 aa6.96□□□□□ -1.3
VPS41-203ENST00000395969 ACEP12821 1306 aa6.96□□□□□ -1.3
VPS41-203ENST00000395969 MINK1Q8N4C8 1332 aaPredicted RBP6.96□□□□□ -1.3
VPS41-203ENST00000395969 KDM2BQ8NHM5 1336 aa6.96□□□□□ -1.3
VPS41-203ENST00000395969 FAM9BQ8IZU0 186 aa6.96□□□□□ -1.3
VPS41-203ENST00000395969 RCAN3Q9UKA8 241 aa6.96□□□□□ -1.3
VPS41-203ENST00000395969 SRPK2P78362 688 aaKnown RBP6.96□□□□□ -1.3
VPS41-203ENST00000395969 ALDH1L2Q3SY69 923 aa6.96□□□□□ -1.3
VPS41-203ENST00000395969 RREB1Q92766 1687 aa6.95□□□□□ -1.3
VPS41-203ENST00000395969 RGPD2P0DJD1 1756 aa6.95□□□□□ -1.3
VPS41-203ENST00000395969 NWD2Q9ULI1 1742 aa6.95□□□□□ -1.3
VPS41-203ENST00000395969 SENP3-EIF4A1A0A087X0R7 540 aa6.95□□□□□ -1.3
VPS41-203ENST00000395969 CALD1Q05682 793 aaKnown RBP6.95□□□□□ -1.3
VPS41-203ENST00000395969 TRIM35Q9UPQ4 493 aa6.95□□□□□ -1.3
VPS41-203ENST00000395969 NRAPQ86VF7 1730 aa6.95□□□□□ -1.3
VPS41-203ENST00000395969 ARHGAP45Q92619 1136 aa6.95□□□□□ -1.3
VPS41-203ENST00000395969 GSE1Q14687 1217 aa6.94□□□□□ -1.3
VPS41-203ENST00000395969 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.94□□□□□ -1.3
VPS41-203ENST00000395969 COL14A1Q05707 1796 aaKnown RBP6.94□□□□□ -1.3
VPS41-203ENST00000395969 RGPD5Q99666 1765 aa6.94□□□□□ -1.3
VPS41-203ENST00000395969 DIAPH1O60610 1272 aaKnown RBP6.94□□□□□ -1.3
VPS41-203ENST00000395969 DHX37Q8IY37 1157 aaKnown RBP6.94□□□□□ -1.3
VPS41-203ENST00000395969 CEMIPQ8WUJ3 1361 aa6.94□□□□□ -1.3
VPS41-203ENST00000395969 ZMYND15Q9H091 742 aa6.94□□□□□ -1.3
VPS41-203ENST00000395969 TCERG1O14776 1098 aaKnown RBP6.93□□□□□ -1.3
VPS41-203ENST00000395969 LMOD3Q0VAK6 560 aa6.93□□□□□ -1.3
VPS41-203ENST00000395969 IFT57Q9NWB7 429 aa6.93□□□□□ -1.3
VPS41-203ENST00000395969 TMPOP42166 694 aaKnown RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms