RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 SMC5Q8IY18 1101 aa23.19■■□□□ 1.3
PCDHA1-202ENST00000394633 TMEM57Q8N5G2 664 aa23.19■■□□□ 1.3
PCDHA1-202ENST00000394633 C22orf23Q9BZE7 217 aa23.19■■□□□ 1.3
PCDHA1-202ENST00000394633 TERF2IPQ9NYB0 399 aa23.19■■□□□ 1.3
PCDHA1-202ENST00000394633 NPHP4O75161 1426 aaPredicted RBP23.19■■□□□ 1.3
PCDHA1-202ENST00000394633 MFAP1P55081 439 aaKnown RBP23.18■■□□□ 1.3
PCDHA1-202ENST00000394633 CABP1Q9NZU7 370 aa23.18■■□□□ 1.3
PCDHA1-202ENST00000394633 CHD2O14647 1828 aaKnown RBP23.18■■□□□ 1.3
PCDHA1-202ENST00000394633 ZBTB40Q9NUA8 1239 aa23.17■■□□□ 1.3
PCDHA1-202ENST00000394633 DIAPH1O60610 1272 aaKnown RBP23.16■■□□□ 1.3
PCDHA1-202ENST00000394633 PNPLA6Q8IY17 1366 aa23.16■■□□□ 1.3
PCDHA1-202ENST00000394633 CDC42BPGQ6DT37 1551 aa23.16■■□□□ 1.3
PCDHA1-202ENST00000394633 HSPA2P54652 639 aa23.16■■□□□ 1.3
PCDHA1-202ENST00000394633 SPRYD3Q8NCJ5 442 aa23.16■■□□□ 1.3
PCDHA1-202ENST00000394633 LRRC7Q96NW7 1537 aa23.15■■□□□ 1.3
PCDHA1-202ENST00000394633 PIK3R4Q99570 1358 aa23.15■■□□□ 1.3
PCDHA1-202ENST00000394633 PRR36Q9H6K5 1346 aa23.15■■□□□ 1.3
PCDHA1-202ENST00000394633 KIF16BQ96L93 1317 aa23.14■■□□□ 1.3
PCDHA1-202ENST00000394633 ATP7BP35670 1465 aa23.14■■□□□ 1.3
PCDHA1-202ENST00000394633 NUTM2FA1L443 756 aa23.13■■□□□ 1.29
PCDHA1-202ENST00000394633 RBM33Q96EV2 1170 aaKnown RBP23.12■■□□□ 1.29
PCDHA1-202ENST00000394633 PPIP5K1Q6PFW1 1433 aa23.12■■□□□ 1.29
PCDHA1-202ENST00000394633 NUDT16Q96DE0 195 aaKnown RBP23.12■■□□□ 1.29
PCDHA1-202ENST00000394633 PNNQ9H307 717 aaKnown RBP23.12■■□□□ 1.29
PCDHA1-202ENST00000394633 IPO8O15397 1037 aaKnown RBP23.11■■□□□ 1.29
PCDHA1-202ENST00000394633 ALDH1L2Q3SY69 923 aa23.1■■□□□ 1.29
PCDHA1-202ENST00000394633 HDGFL2Q7Z4V5 671 aaPredicted RBP23.1■■□□□ 1.29
PCDHA1-202ENST00000394633 FAM43AQ8N2R8 423 aa23.1■■□□□ 1.29
PCDHA1-202ENST00000394633 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.1■■□□□ 1.29
PCDHA1-202ENST00000394633 MCM4P33991 863 aa23.09■■□□□ 1.29
PCDHA1-202ENST00000394633 NUCB1Q02818 461 aa23.09■■□□□ 1.29
PCDHA1-202ENST00000394633 LMTK3Q96Q04 1460 aa23.09■■□□□ 1.29
PCDHA1-202ENST00000394633 MAP2P11137 1827 aaKnown RBP23.09■■□□□ 1.29
PCDHA1-202ENST00000394633 CHMP5Q9NZZ3 219 aa23.09■■□□□ 1.29
PCDHA1-202ENST00000394633 L1TD1Q5T7N2 865 aaKnown RBP23.08■■□□□ 1.29
PCDHA1-202ENST00000394633 FCHSD2O94868 740 aa23.08■■□□□ 1.28
PCDHA1-202ENST00000394633 NALCNQ8IZF0 1738 aa23.07■■□□□ 1.28
PCDHA1-202ENST00000394633 RSPH6AQ9H0K4 717 aa23.06■■□□□ 1.28
PCDHA1-202ENST00000394633 CCDC61Q9Y6R9 512 aa23.06■■□□□ 1.28
PCDHA1-202ENST00000394633 TOPAZ1Q8N9V7 1692 aa23.06■■□□□ 1.28
PCDHA1-202ENST00000394633 RGPD8O14715 1765 aaPredicted RBP23.05■■□□□ 1.28
PCDHA1-202ENST00000394633 PRKAR2BP31323 418 aa23.05■■□□□ 1.28
PCDHA1-202ENST00000394633 LNPKQ9C0E8 428 aa23.05■■□□□ 1.28
PCDHA1-202ENST00000394633 CPSF1Q10570 1443 aaKnown RBP23.05■■□□□ 1.28
PCDHA1-202ENST00000394633 BRPF1P55201 1214 aaPredicted RBP23.04■■□□□ 1.28
PCDHA1-202ENST00000394633 CHD1LQ86WJ1 897 aa23.04■■□□□ 1.28
PCDHA1-202ENST00000394633 HSCBQ8IWL3 235 aa23.04■■□□□ 1.28
PCDHA1-202ENST00000394633 NCOA3Q9Y6Q9 1424 aa23.03■■□□□ 1.28
PCDHA1-202ENST00000394633 FBLN1P23142 703 aa23.03■■□□□ 1.28
PCDHA1-202ENST00000394633 RBM25P49756 843 aaKnown RBP23.03■■□□□ 1.28
PCDHA1-202ENST00000394633 ZNF692Q9BU19 519 aaPredicted RBP23.03■■□□□ 1.28
PCDHA1-202ENST00000394633 POLKQ9UBT6 870 aa23.02■■□□□ 1.28
PCDHA1-202ENST00000394633 NWD1Q149M9 1564 aa23.01■■□□□ 1.27
PCDHA1-202ENST00000394633 ZNF428Q96B54 188 aa23.01■■□□□ 1.27
PCDHA1-202ENST00000394633 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.01■■□□□ 1.27
PCDHA1-202ENST00000394633 AKAP12Q02952 1782 aa23.01■■□□□ 1.27
PCDHA1-202ENST00000394633 ITSN1Q15811 1721 aa23■■□□□ 1.27
PCDHA1-202ENST00000394633 MON2Q7Z3U7 1717 aa23■■□□□ 1.27
PCDHA1-202ENST00000394633 FSD2A1L4K1 749 aa23■■□□□ 1.27
PCDHA1-202ENST00000394633 DLG5Q8TDM6 1919 aa23■■□□□ 1.27
PCDHA1-202ENST00000394633 ZBTB7BO15156 539 aaPredicted RBP23■■□□□ 1.27
PCDHA1-202ENST00000394633 PHACTR3Q96KR7 559 aa23■■□□□ 1.27
PCDHA1-202ENST00000394633 VAMP4O75379 141 aa22.99■■□□□ 1.27
PCDHA1-202ENST00000394633 NFE2L2Q16236 605 aa22.99■■□□□ 1.27
PCDHA1-202ENST00000394633 MRPL50Q8N5N7 158 aaKnown RBP22.99■■□□□ 1.27
PCDHA1-202ENST00000394633 STRCQ7RTU9 1775 aa22.98■■□□□ 1.27
PCDHA1-202ENST00000394633 DDIT3P35638 169 aa22.98■■□□□ 1.27
PCDHA1-202ENST00000394633 THUMPD2Q9BTF0 503 aaKnown RBP22.98■■□□□ 1.27
PCDHA1-202ENST00000394633 STRCP1A6NGW2 1772 aa22.98■■□□□ 1.27
PCDHA1-202ENST00000394633 SNX21Q969T3 373 aa22.98■■□□□ 1.27
PCDHA1-202ENST00000394633 FMN2Q9NZ56 1722 aa22.98■■□□□ 1.27
PCDHA1-202ENST00000394633 GOLGA6L3A6NEY3 463 aa22.97■■□□□ 1.27
PCDHA1-202ENST00000394633 TRAK2O60296 914 aa22.97■■□□□ 1.27
PCDHA1-202ENST00000394633 HMOX1P09601 288 aa22.97■■□□□ 1.27
PCDHA1-202ENST00000394633 XRCC6P12956 609 aaKnown RBP eCLIP22.97■■□□□ 1.27
PCDHA1-202ENST00000394633 BMP2KLQ5H9B9 411 aa22.97■■□□□ 1.27
PCDHA1-202ENST00000394633 GZF1Q9H116 711 aaPredicted RBP22.97■■□□□ 1.27
PCDHA1-202ENST00000394633 TSPYL6Q8N831 410 aa22.97■■□□□ 1.27
PCDHA1-202ENST00000394633 ARHGAP45Q92619 1136 aa22.96■■□□□ 1.27
PCDHA1-202ENST00000394633 ARXQ96QS3 562 aa22.96■■□□□ 1.27
PCDHA1-202ENST00000394633 C1orf115Q9H7X2 142 aa22.96■■□□□ 1.27
PCDHA1-202ENST00000394633 ACEP12821 1306 aa22.96■■□□□ 1.27
PCDHA1-202ENST00000394633 EDC4Q6P2E9 1401 aaKnown RBP22.95■■□□□ 1.27
PCDHA1-202ENST00000394633 ANKRD45Q5TZF3 282 aa22.95■■□□□ 1.26
PCDHA1-202ENST00000394633 GCC1Q96CN9 775 aa22.95■■□□□ 1.26
PCDHA1-202ENST00000394633 ADGRL3Q9HAR2 1447 aa22.95■■□□□ 1.26
PCDHA1-202ENST00000394633 RRAGDQ9NQL2 400 aaPredicted RBP22.94■■□□□ 1.26
PCDHA1-202ENST00000394633 NRKQ7Z2Y5 1582 aa22.93■■□□□ 1.26
PCDHA1-202ENST00000394633 PLEKHG3A1L390 1219 aa22.93■■□□□ 1.26
PCDHA1-202ENST00000394633 ZNF853P0CG23 659 aa22.93■■□□□ 1.26
PCDHA1-202ENST00000394633 CALD1Q05682 793 aaKnown RBP22.93■■□□□ 1.26
PCDHA1-202ENST00000394633 NME9Q86XW9 330 aa22.93■■□□□ 1.26
PCDHA1-202ENST00000394633 IFT57Q9NWB7 429 aa22.93■■□□□ 1.26
PCDHA1-202ENST00000394633 ZRANB1Q9UGI0 708 aa22.93■■□□□ 1.26
PCDHA1-202ENST00000394633 ABCC4O15439 1325 aa22.92■■□□□ 1.26
PCDHA1-202ENST00000394633 GNAI1P63096 354 aa22.92■■□□□ 1.26
PCDHA1-202ENST00000394633 KIF2CQ99661 725 aa22.92■■□□□ 1.26
PCDHA1-202ENST00000394633 CHMP4BQ9H444 224 aaKnown RBP22.92■■□□□ 1.26
PCDHA1-202ENST00000394633 EMILIN1Q9Y6C2 1016 aa22.92■■□□□ 1.26
PCDHA1-202ENST00000394633 IL13P35225 146 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms