RNA–Protein interactions for RNA: ENST00000393120.6

MKS1-203, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 1,926 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-203ENST00000393120 XRN1Q8IZH2 1706 aaKnown RBP18.34■□□□□ 0.53
MKS1-203ENST00000393120 BRPF1P55201 1214 aaPredicted RBP18.33■□□□□ 0.53
MKS1-203ENST00000393120 NOP58Q9Y2X3 529 aaKnown RBP18.33■□□□□ 0.53
MKS1-203ENST00000393120 IFT57Q9NWB7 429 aa18.32■□□□□ 0.52
MKS1-203ENST00000393120 TNNQ9UQP3 1299 aa18.32■□□□□ 0.52
MKS1-203ENST00000393120 ANKARQ7Z5J8 1434 aa18.32■□□□□ 0.52
MKS1-203ENST00000393120 CEP170BQ9Y4F5 1589 aaPredicted RBP18.32■□□□□ 0.52
MKS1-203ENST00000393120 ZNF853P0CG23 659 aa18.31■□□□□ 0.52
MKS1-203ENST00000393120 FAM161AQ3B820 660 aa18.31■□□□□ 0.52
MKS1-203ENST00000393120 IPO8O15397 1037 aaKnown RBP18.31■□□□□ 0.52
MKS1-203ENST00000393120 GNAI1P63096 354 aa18.31■□□□□ 0.52
MKS1-203ENST00000393120 KIF16BQ96L93 1317 aa18.3■□□□□ 0.52
MKS1-203ENST00000393120 NALCNQ8IZF0 1738 aa18.3■□□□□ 0.52
MKS1-203ENST00000393120 PLPPR3Q6T4P5 718 aa18.3■□□□□ 0.52
MKS1-203ENST00000393120 ATF7IPQ6VMQ6 1270 aa18.3■□□□□ 0.52
MKS1-203ENST00000393120 FTSJ3Q8IY81 847 aaKnown RBP18.3■□□□□ 0.52
MKS1-203ENST00000393120 PCDHB15Q9Y5E8 787 aa18.3■□□□□ 0.52
MKS1-203ENST00000393120 NUTM2FA1L443 756 aa18.29■□□□□ 0.52
MKS1-203ENST00000393120 TRIM27P14373 513 aa18.29■□□□□ 0.52
MKS1-203ENST00000393120 EIF4A2Q14240 407 aaKnown RBP18.29■□□□□ 0.52
MKS1-203ENST00000393120 RWDD1Q9H446 243 aaPredicted RBP18.29■□□□□ 0.52
MKS1-203ENST00000393120 C8orf34Q49A92 452 aa18.27■□□□□ 0.52
MKS1-203ENST00000393120 ZBTB47Q9UFB7 747 aaPredicted RBP18.27■□□□□ 0.52
MKS1-203ENST00000393120 NOB1Q9ULX3 412 aaKnown RBP18.27■□□□□ 0.52
MKS1-203ENST00000393120 DDX19BQ9UMR2 479 aa18.27■□□□□ 0.52
MKS1-203ENST00000393120 RIMS1Q86UR5 1692 aaKnown RBP18.27■□□□□ 0.52
MKS1-203ENST00000393120 KCNA6P17658 529 aa18.27■□□□□ 0.51
MKS1-203ENST00000393120 CFAP44Q96MT7 982 aa18.27■□□□□ 0.51
MKS1-203ENST00000393120 VAMP4O75379 141 aa18.26■□□□□ 0.51
MKS1-203ENST00000393120 NGDNQ8NEJ9 315 aaKnown RBP18.26■□□□□ 0.51
MKS1-203ENST00000393120 RGS3P49796 1198 aa18.25■□□□□ 0.51
MKS1-203ENST00000393120 ANKLE2Q86XL3 938 aa18.25■□□□□ 0.51
MKS1-203ENST00000393120 ARHGAP45Q92619 1136 aa18.25■□□□□ 0.51
MKS1-203ENST00000393120 SULT6B1Q6IMI4 303 aa18.23■□□□□ 0.51
MKS1-203ENST00000393120 THUMPD2Q9BTF0 503 aaKnown RBP18.23■□□□□ 0.51
MKS1-203ENST00000393120 MBIPQ9NS73 344 aa18.23■□□□□ 0.51
MKS1-203ENST00000393120 PAK3O75914 559 aaPredicted RBP18.23■□□□□ 0.51
MKS1-203ENST00000393120 HDAC1Q13547 482 aaPredicted RBP18.23■□□□□ 0.51
MKS1-203ENST00000393120 HSP90AB2PQ58FF8 381 aa18.23■□□□□ 0.51
MKS1-203ENST00000393120 LAS1LQ9Y4W2 734 aaKnown RBP18.23■□□□□ 0.51
MKS1-203ENST00000393120 RGPD1P0DJD0 1748 aa18.23■□□□□ 0.51
MKS1-203ENST00000393120 PEAK1Q9H792 1746 aa18.23■□□□□ 0.51
MKS1-203ENST00000393120 SBNO1A3KN83 1393 aa18.22■□□□□ 0.51
MKS1-203ENST00000393120 ARHGEF10O15013 1369 aa18.22■□□□□ 0.51
MKS1-203ENST00000393120 NPM2Q86SE8 214 aaKnown RBP18.22■□□□□ 0.51
MKS1-203ENST00000393120 ZNF142P52746 1687 aaPredicted RBP18.22■□□□□ 0.51
MKS1-203ENST00000393120 MAP3K19Q56UN5 1328 aa18.22■□□□□ 0.51
MKS1-203ENST00000393120 FLT4P35916 1363 aa18.21■□□□□ 0.51
MKS1-203ENST00000393120 KIF24Q5T7B8 1368 aa18.21■□□□□ 0.51
MKS1-203ENST00000393120 AEBP1Q8IUX7 1158 aa18.21■□□□□ 0.51
MKS1-203ENST00000393120 MRPL50Q8N5N7 158 aaKnown RBP18.21■□□□□ 0.51
MKS1-203ENST00000393120 DDRGK1Q96HY6 314 aa18.21■□□□□ 0.51
MKS1-203ENST00000393120 FMN2Q9NZ56 1722 aa18.2■□□□□ 0.5
MKS1-203ENST00000393120 ITPRIPQ8IWB1 547 aa18.2■□□□□ 0.5
MKS1-203ENST00000393120 TMEM57Q8N5G2 664 aa18.2■□□□□ 0.5
MKS1-203ENST00000393120 ZBTB40Q9NUA8 1239 aa18.2■□□□□ 0.5
MKS1-203ENST00000393120 ADAMTSL3P82987 1691 aa18.2■□□□□ 0.5
MKS1-203ENST00000393120 CHMP4BQ9H444 224 aaKnown RBP18.19■□□□□ 0.5
MKS1-203ENST00000393120 DLG5Q8TDM6 1919 aa18.18■□□□□ 0.5
MKS1-203ENST00000393120 TWISTNBQ3B726 338 aaPredicted RBP18.18■□□□□ 0.5
MKS1-203ENST00000393120 TSPYL6Q8N831 410 aa18.18■□□□□ 0.5
MKS1-203ENST00000393120 PDZRN3Q9UPQ7 1066 aa18.18■□□□□ 0.5
MKS1-203ENST00000393120 KDRP35968 1356 aa18.18■□□□□ 0.5
MKS1-203ENST00000393120 PIK3C2AO00443 1686 aa18.18■□□□□ 0.5
MKS1-203ENST00000393120 FAM83GA6ND36 823 aa18.17■□□□□ 0.5
MKS1-203ENST00000393120 RGPD8O14715 1765 aaPredicted RBP18.17■□□□□ 0.5
MKS1-203ENST00000393120 CHD2O14647 1828 aaKnown RBP18.17■□□□□ 0.5
MKS1-203ENST00000393120 USP54Q70EL1 1684 aa18.17■□□□□ 0.5
MKS1-203ENST00000393120 CHL1O00533 1208 aa18.17■□□□□ 0.5
MKS1-203ENST00000393120 HAP1P54257 671 aaPredicted RBP18.17■□□□□ 0.5
MKS1-203ENST00000393120 NLRP6P59044 892 aa18.15■□□□□ 0.5
MKS1-203ENST00000393120 C8orf58Q8NAV2 365 aa18.15■□□□□ 0.5
MKS1-203ENST00000393120 IGSF1Q8N6C5 1336 aa18.15■□□□□ 0.5
MKS1-203ENST00000393120 KIAA0232Q92628 1395 aa18.14■□□□□ 0.49
MKS1-203ENST00000393120 AMPHP49418 695 aa18.14■□□□□ 0.49
MKS1-203ENST00000393120 DCTN1Q14203 1278 aa18.14■□□□□ 0.49
MKS1-203ENST00000393120 SMC5Q8IY18 1101 aa18.14■□□□□ 0.49
MKS1-203ENST00000393120 SETD1BQ9UPS6 1966 aaKnown RBP18.13■□□□□ 0.49
MKS1-203ENST00000393120 ABCC4O15439 1325 aa18.13■□□□□ 0.49
MKS1-203ENST00000393120 PHF8Q9UPP1 1060 aa18.13■□□□□ 0.49
MKS1-203ENST00000393120 ZBTB7BO15156 539 aaPredicted RBP18.12■□□□□ 0.49
MKS1-203ENST00000393120 API5Q9BZZ5 524 aaKnown RBP18.12■□□□□ 0.49
MKS1-203ENST00000393120 CRB1P82279 1406 aa18.12■□□□□ 0.49
MKS1-203ENST00000393120 SOX12O15370 315 aa18.11■□□□□ 0.49
MKS1-203ENST00000393120 EYA1Q99502 592 aa18.11■□□□□ 0.49
MKS1-203ENST00000393120 ADGRL3Q9HAR2 1447 aa18.11■□□□□ 0.49
MKS1-203ENST00000393120 HTATSF1O43719 755 aaKnown RBP18.11■□□□□ 0.49
MKS1-203ENST00000393120 ABTB2Q8N961 1025 aa18.11■□□□□ 0.49
MKS1-203ENST00000393120 ELL2O00472 640 aaPredicted RBP18.1■□□□□ 0.49
MKS1-203ENST00000393120 HOXC9P31274 260 aa18.1■□□□□ 0.49
MKS1-203ENST00000393120 MCM10Q7L590 875 aa18.1■□□□□ 0.49
MKS1-203ENST00000393120 GAS2L2Q8NHY3 880 aa18.1■□□□□ 0.49
MKS1-203ENST00000393120 MARF1Q9Y4F3 1742 aaKnown RBP18.09■□□□□ 0.49
MKS1-203ENST00000393120 NPHP4O75161 1426 aaPredicted RBP18.09■□□□□ 0.49
MKS1-203ENST00000393120 MTHFSDQ2M296 383 aaKnown RBP18.09■□□□□ 0.49
MKS1-203ENST00000393120 RTL1A6NKG5 1358 aa18.09■□□□□ 0.49
MKS1-203ENST00000393120 VIRMAQ69YN4 1812 aaKnown RBP18.08■□□□□ 0.49
MKS1-203ENST00000393120 USP19O94966 1318 aa18.07■□□□□ 0.48
MKS1-203ENST00000393120 RTF1Q92541 710 aaKnown RBP18.07■□□□□ 0.48
MKS1-203ENST00000393120 NUCB1Q02818 461 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms