RNA–Protein interactions for RNA: ENST00000389195.6

LTN1-203, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LTN1, Length 2,714 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-203ENST00000389195 IGHDP01880 384 aa13.15□□□□□ -0.3
LTN1-203ENST00000389195 SMC4Q9NTJ3 1288 aa13.14□□□□□ -0.31
LTN1-203ENST00000389195 ANKRD26Q9UPS8 1709 aa13.14□□□□□ -0.31
LTN1-203ENST00000389195 NEFMP07197 916 aa13.14□□□□□ -0.31
LTN1-203ENST00000389195 RGS3P49796 1198 aa13.14□□□□□ -0.31
LTN1-203ENST00000389195 ITSN1Q15811 1721 aa13.14□□□□□ -0.31
LTN1-203ENST00000389195 NFE2L2Q16236 605 aa13.13□□□□□ -0.31
LTN1-203ENST00000389195 MYH16Q9H6N6 1097 aa13.13□□□□□ -0.31
LTN1-203ENST00000389195 MON2Q7Z3U7 1717 aa13.13□□□□□ -0.31
LTN1-203ENST00000389195 CCDC27Q2M243 656 aa13.13□□□□□ -0.31
LTN1-203ENST00000389195 NPHP4O75161 1426 aaPredicted RBP13.13□□□□□ -0.31
LTN1-203ENST00000389195 PTCH1Q13635 1447 aa13.13□□□□□ -0.31
LTN1-203ENST00000389195 EYA1Q99502 592 aa13.12□□□□□ -0.31
LTN1-203ENST00000389195 AKAP12Q02952 1782 aa13.12□□□□□ -0.31
LTN1-203ENST00000389195 CABLES1Q8TDN4 633 aa13.12□□□□□ -0.31
LTN1-203ENST00000389195 NOB1Q9ULX3 412 aaKnown RBP13.12□□□□□ -0.31
LTN1-203ENST00000389195 OVOS2A0A0J9YW53 1432 aa13.12□□□□□ -0.31
LTN1-203ENST00000389195 OVOS2Q6IE36 1432 aa13.12□□□□□ -0.31
LTN1-203ENST00000389195 C8orf58Q8NAV2 365 aa13.12□□□□□ -0.31
LTN1-203ENST00000389195 MBIPQ9NS73 344 aa13.12□□□□□ -0.31
LTN1-203ENST00000389195 SSH2Q76I76 1423 aa13.11□□□□□ -0.31
LTN1-203ENST00000389195 KDM4FA0A1W2PPD8 638 aa13.11□□□□□ -0.31
LTN1-203ENST00000389195 NPM2Q86SE8 214 aaKnown RBP13.11□□□□□ -0.31
LTN1-203ENST00000389195 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.11□□□□□ -0.31
LTN1-203ENST00000389195 LRRC59Q96AG4 307 aaKnown RBP13.11□□□□□ -0.31
LTN1-203ENST00000389195 PEAK1Q9H792 1746 aa13.1□□□□□ -0.31
LTN1-203ENST00000389195 MTHFSDQ2M296 383 aaKnown RBP13.1□□□□□ -0.31
LTN1-203ENST00000389195 XRN1Q8IZH2 1706 aaKnown RBP13.1□□□□□ -0.31
LTN1-203ENST00000389195 AATKQ6ZMQ8 1374 aa13.1□□□□□ -0.31
LTN1-203ENST00000389195 PCDHB15Q9Y5E8 787 aa13.1□□□□□ -0.31
LTN1-203ENST00000389195 NALCNQ8IZF0 1738 aa13.09□□□□□ -0.31
LTN1-203ENST00000389195 TRIM27P14373 513 aa13.09□□□□□ -0.31
LTN1-203ENST00000389195 ZC3H6P61129 1189 aaKnown RBP13.09□□□□□ -0.31
LTN1-203ENST00000389195 NECTIN2Q92692 538 aa13.09□□□□□ -0.31
LTN1-203ENST00000389195 ADGRB2O60241 1585 aa13.08□□□□□ -0.32
LTN1-203ENST00000389195 HOXC9P31274 260 aa13.08□□□□□ -0.32
LTN1-203ENST00000389195 TOPAZ1Q8N9V7 1692 aa13.08□□□□□ -0.32
LTN1-203ENST00000389195 MSH5O43196 834 aa13.08□□□□□ -0.32
LTN1-203ENST00000389195 CDK12Q9NYV4 1490 aaPredicted RBP13.08□□□□□ -0.32
LTN1-203ENST00000389195 CHD2O14647 1828 aaKnown RBP13.08□□□□□ -0.32
LTN1-203ENST00000389195 FTSJ3Q8IY81 847 aaKnown RBP13.07□□□□□ -0.32
LTN1-203ENST00000389195 ITPRIPQ8IWB1 547 aa13.07□□□□□ -0.32
LTN1-203ENST00000389195 PIK3C2AO00443 1686 aa13.06□□□□□ -0.32
LTN1-203ENST00000389195 NGEFQ8N5V2 710 aa13.06□□□□□ -0.32
LTN1-203ENST00000389195 C1orf115Q9H7X2 142 aa13.06□□□□□ -0.32
LTN1-203ENST00000389195 NRKQ7Z2Y5 1582 aa13.06□□□□□ -0.32
LTN1-203ENST00000389195 AXIN2Q9Y2T1 843 aa13.06□□□□□ -0.32
LTN1-203ENST00000389195 TTC21AQ8NDW8 1320 aa13.06□□□□□ -0.32
LTN1-203ENST00000389195 NBPF6Q5VWK0 638 aa13.05□□□□□ -0.32
LTN1-203ENST00000389195 TMEM57Q8N5G2 664 aa13.05□□□□□ -0.32
LTN1-203ENST00000389195 NBPF4Q96M43 638 aa13.05□□□□□ -0.32
LTN1-203ENST00000389195 PNNQ9H307 717 aaKnown RBP13.05□□□□□ -0.32
LTN1-203ENST00000389195 TMEM94Q12767 1356 aa13.05□□□□□ -0.32
LTN1-203ENST00000389195 USP31Q70CQ4 1352 aa13.05□□□□□ -0.32
LTN1-203ENST00000389195 VAMP4O75379 141 aa13.05□□□□□ -0.32
LTN1-203ENST00000389195 KRT28Q7Z3Y7 464 aa13.05□□□□□ -0.32
LTN1-203ENST00000389195 KDM2BQ8NHM5 1336 aa13.05□□□□□ -0.32
LTN1-203ENST00000389195 ZKSCAN2Q63HK3 967 aa13.04□□□□□ -0.32
LTN1-203ENST00000389195 TWISTNBQ3B726 338 aaPredicted RBP13.04□□□□□ -0.32
LTN1-203ENST00000389195 DZIP1LQ8IYY4 767 aaKnown RBP13.04□□□□□ -0.32
LTN1-203ENST00000389195 ZNF428Q96B54 188 aa13.04□□□□□ -0.32
LTN1-203ENST00000389195 DLG5Q8TDM6 1919 aa13.03□□□□□ -0.32
LTN1-203ENST00000389195 PIK3R4Q99570 1358 aa13.03□□□□□ -0.32
LTN1-203ENST00000389195 GCP02774 474 aa13.03□□□□□ -0.32
LTN1-203ENST00000389195 CHRNA2Q15822 529 aa13.03□□□□□ -0.32
LTN1-203ENST00000389195 FLT4P35916 1363 aa13.03□□□□□ -0.32
LTN1-203ENST00000389195 ADGRL3Q9HAR2 1447 aa13.03□□□□□ -0.32
LTN1-203ENST00000389195 ATF3P18847 181 aa13.03□□□□□ -0.32
LTN1-203ENST00000389195 PDE3AQ14432 1141 aa13.03□□□□□ -0.32
LTN1-203ENST00000389195 C19orf44Q9H6X5 657 aa13.03□□□□□ -0.32
LTN1-203ENST00000389195 ZNF335Q9H4Z2 1342 aaPredicted RBP13.03□□□□□ -0.32
LTN1-203ENST00000389195 CFAP44Q96MT7 982 aa13.02□□□□□ -0.33
LTN1-203ENST00000389195 FMN2Q9NZ56 1722 aa13.01□□□□□ -0.33
LTN1-203ENST00000389195 PDE4AP27815 886 aa13.01□□□□□ -0.33
LTN1-203ENST00000389195 ATF7IPQ6VMQ6 1270 aa13.01□□□□□ -0.33
LTN1-203ENST00000389195 SBNO1A3KN83 1393 aa13.01□□□□□ -0.33
LTN1-203ENST00000389195 ZNF142P52746 1687 aaPredicted RBP13□□□□□ -0.33
LTN1-203ENST00000389195 ZNF853P0CG23 659 aa13□□□□□ -0.33
LTN1-203ENST00000389195 GNAI1P63096 354 aa13□□□□□ -0.33
LTN1-203ENST00000389195 LGR6Q9HBX8 967 aa13□□□□□ -0.33
LTN1-203ENST00000389195 MVPQ14764 893 aaKnown RBP13□□□□□ -0.33
LTN1-203ENST00000389195 IFT57Q9NWB7 429 aa12.99□□□□□ -0.33
LTN1-203ENST00000389195 CENPQQ7L2Z9 268 aaPredicted RBP12.99□□□□□ -0.33
LTN1-203ENST00000389195 IL17REQ8NFR9 667 aa12.99□□□□□ -0.33
LTN1-203ENST00000389195 RTF1Q92541 710 aaKnown RBP12.99□□□□□ -0.33
LTN1-203ENST00000389195 ANKARQ7Z5J8 1434 aa12.99□□□□□ -0.33
LTN1-203ENST00000389195 IL16Q14005 1332 aa12.98□□□□□ -0.33
LTN1-203ENST00000389195 IGSF1Q8N6C5 1336 aa12.98□□□□□ -0.33
LTN1-203ENST00000389195 MPRIPQ6WCQ1 1025 aa12.98□□□□□ -0.33
LTN1-203ENST00000389195 TSPYL4Q9UJ04 414 aa12.98□□□□□ -0.33
LTN1-203ENST00000389195 STRCP1A6NGW2 1772 aa12.98□□□□□ -0.33
LTN1-203ENST00000389195 F6X3S4 739 aa12.97□□□□□ -0.33
LTN1-203ENST00000389195 KCNQ3O43525 872 aa12.97□□□□□ -0.33
LTN1-203ENST00000389195 G2E3Q7L622 706 aa12.97□□□□□ -0.33
LTN1-203ENST00000389195 MRPL50Q8N5N7 158 aaKnown RBP12.97□□□□□ -0.33
LTN1-203ENST00000389195 IP6K1Q92551 441 aa12.97□□□□□ -0.33
LTN1-203ENST00000389195 C1orf167Q5SNV9 1468 aa12.96□□□□□ -0.33
LTN1-203ENST00000389195 MARF1Q9Y4F3 1742 aaKnown RBP12.96□□□□□ -0.33
LTN1-203ENST00000389195 CHL1O00533 1208 aa12.96□□□□□ -0.34
LTN1-203ENST00000389195 ANKRD24Q8TF21 1146 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms