RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 CCDC97Q96F63 343 aaPredicted RBP14.28□□□□□ -0.12
PCDHA9-201ENST00000378122 FMNL2Q96PY5 1086 aa14.28□□□□□ -0.12
PCDHA9-201ENST00000378122 STK3Q13188 491 aa14.28□□□□□ -0.12
PCDHA9-201ENST00000378122 RRP12Q5JTH9 1297 aaKnown RBP14.28□□□□□ -0.12
PCDHA9-201ENST00000378122 PRKCSHP14314 528 aaPredicted RBP14.27□□□□□ -0.12
PCDHA9-201ENST00000378122 HMGN5P82970 282 aaKnown RBP14.27□□□□□ -0.12
PCDHA9-201ENST00000378122 CCDC30Q5VVM6 783 aa14.27□□□□□ -0.12
PCDHA9-201ENST00000378122 NBPF1Q3BBV0 1214 aa14.27□□□□□ -0.12
PCDHA9-201ENST00000378122 AQRO60306 1485 aaKnown RBP eCLIP14.27□□□□□ -0.13
PCDHA9-201ENST00000378122 NBPF8Q3BBV2 869 aa14.27□□□□□ -0.13
PCDHA9-201ENST00000378122 KINO60870 393 aaKnown RBP14.27□□□□□ -0.13
PCDHA9-201ENST00000378122 BRMS1Q9HCU9 246 aa14.27□□□□□ -0.13
PCDHA9-201ENST00000378122 CNNM1Q9NRU3 951 aa14.27□□□□□ -0.13
PCDHA9-201ENST00000378122 CDR1P51861 262 aa14.26□□□□□ -0.13
PCDHA9-201ENST00000378122 CEBPAP49715 358 aaPredicted RBP14.26□□□□□ -0.13
PCDHA9-201ENST00000378122 ERCC4Q92889 916 aaPredicted RBP14.26□□□□□ -0.13
PCDHA9-201ENST00000378122 H0YHG0 523 aa14.26□□□□□ -0.13
PCDHA9-201ENST00000378122 MCM2P49736 904 aa14.26□□□□□ -0.13
PCDHA9-201ENST00000378122 PIBF1Q8WXW3 757 aa14.26□□□□□ -0.13
PCDHA9-201ENST00000378122 ZPR1O75312 459 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 EPS15P42566 896 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 LEKR1Q6ZMV7 388 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 PODXL2Q9NZ53 605 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 ATP2B1P20020 1258 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 AFAP1Q8N556 730 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 BRPF1P55201 1214 aaPredicted RBP14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 RRP9O43818 475 aaKnown RBP14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 CFAP70Q5T0N1 1121 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 DMRT2Q9Y5R5 561 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 CCP110O43303 1012 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 GNAI2P04899 355 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 GNAI3P08754 354 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 MYL6BP14649 208 aa14.25□□□□□ -0.13
PCDHA9-201ENST00000378122 PNISRQ8TF01 805 aaKnown RBP14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 SYNJ1O43426 1573 aa14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 CLASRPQ8N2M8 674 aaKnown RBP14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 ZNF396Q96N95 335 aaPredicted RBP14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 MVPQ14764 893 aaKnown RBP14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 CHD1LQ86WJ1 897 aa14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 ERICH3Q5RHP9 1530 aa14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 POGZQ7Z3K3 1410 aa14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 RDXP35241 583 aaKnown RBP14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 ZNF622Q969S3 477 aaKnown RBP eCLIP14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 EHBP1L1Q8N3D4 1523 aa14.24□□□□□ -0.13
PCDHA9-201ENST00000378122 ERBINQ96RT1 1412 aa14.23□□□□□ -0.13
PCDHA9-201ENST00000378122 TNMDQ9H2S6 317 aa14.23□□□□□ -0.13
PCDHA9-201ENST00000378122 CCDC85AQ96PX6 553 aaPredicted RBP14.23□□□□□ -0.13
PCDHA9-201ENST00000378122 TOM1O60784 492 aa14.23□□□□□ -0.13
PCDHA9-201ENST00000378122 SCAPERQ9BY12 1400 aa14.23□□□□□ -0.13
PCDHA9-201ENST00000378122 CCDC192P0DO97 292 aa14.22□□□□□ -0.13
PCDHA9-201ENST00000378122 XBP1P17861 261 aa14.22□□□□□ -0.13
PCDHA9-201ENST00000378122 HIP1O00291 1037 aa14.22□□□□□ -0.13
PCDHA9-201ENST00000378122 MCM4P33991 863 aa14.22□□□□□ -0.13
PCDHA9-201ENST00000378122 HSP90AB2PQ58FF8 381 aa14.22□□□□□ -0.13
PCDHA9-201ENST00000378122 SMARCE1Q969G3 411 aa14.22□□□□□ -0.13
PCDHA9-201ENST00000378122 SLC4A2P04920 1241 aa14.21□□□□□ -0.13
PCDHA9-201ENST00000378122 LRRCC1Q9C099 1032 aa14.21□□□□□ -0.13
PCDHA9-201ENST00000378122 ESPNB1AK53 854 aa14.21□□□□□ -0.13
PCDHA9-201ENST00000378122 STK38Q15208 465 aa14.21□□□□□ -0.13
PCDHA9-201ENST00000378122 SKAP1Q86WV1 359 aa14.21□□□□□ -0.13
PCDHA9-201ENST00000378122 KIAA1107Q9UPP5 1409 aa14.21□□□□□ -0.13
PCDHA9-201ENST00000378122 CYP46A1Q9Y6A2 500 aa14.21□□□□□ -0.13
PCDHA9-201ENST00000378122 SERPINC1P01008 464 aa14.21□□□□□ -0.13
PCDHA9-201ENST00000378122 MATR3P43243 847 aaKnown RBP eCLIP14.21□□□□□ -0.14
PCDHA9-201ENST00000378122 TRMT1LQ7Z2T5 733 aaKnown RBP14.21□□□□□ -0.14
PCDHA9-201ENST00000378122 AEBP1Q8IUX7 1158 aa14.21□□□□□ -0.14
PCDHA9-201ENST00000378122 CCDC112Q8NEF3 446 aa14.21□□□□□ -0.14
PCDHA9-201ENST00000378122 SUPT6HQ7KZ85 1726 aaKnown RBP14.21□□□□□ -0.14
PCDHA9-201ENST00000378122 VTI1AQ96AJ9 217 aa14.2□□□□□ -0.14
PCDHA9-201ENST00000378122 TTC39AQ5SRH9 613 aa14.2□□□□□ -0.14
PCDHA9-201ENST00000378122 WDR33Q9C0J8 1336 aaKnown RBP14.2□□□□□ -0.14
PCDHA9-201ENST00000378122 FILIP1LQ4L180 1135 aa14.2□□□□□ -0.14
PCDHA9-201ENST00000378122 TIAM1Q13009 1591 aa14.2□□□□□ -0.14
PCDHA9-201ENST00000378122 ZHX3Q9H4I2 956 aa14.2□□□□□ -0.14
PCDHA9-201ENST00000378122 MAGEC2Q9UBF1 373 aaPredicted RBP14.2□□□□□ -0.14
PCDHA9-201ENST00000378122 PDCP20941 246 aa14.19□□□□□ -0.14
PCDHA9-201ENST00000378122 STAC3Q96MF2 364 aa14.19□□□□□ -0.14
PCDHA9-201ENST00000378122 AXDND1Q5T1B0 1012 aaPredicted RBP14.19□□□□□ -0.14
PCDHA9-201ENST00000378122 SIL1Q9H173 461 aa14.19□□□□□ -0.14
PCDHA9-201ENST00000378122 WDR63Q8IWG1 891 aa14.19□□□□□ -0.14
PCDHA9-201ENST00000378122 GAS2L2Q8NHY3 880 aa14.19□□□□□ -0.14
PCDHA9-201ENST00000378122 ERICH4A6NGS2 130 aa14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 ATF7IPQ6VMQ6 1270 aa14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 ERC1Q8IUD2 1116 aa14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 PRDM10Q9NQV6 1147 aa14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 OFD1O75665 1012 aa14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 FAM177A1Q8N128 213 aaPredicted RBP14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 BIN2Q9UBW5 565 aaPredicted RBP14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 DCTN1Q14203 1278 aa14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 PLEKHO1Q53GL0 409 aaPredicted RBP14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 MPRIPQ6WCQ1 1025 aa14.18□□□□□ -0.14
PCDHA9-201ENST00000378122 PRAM1Q96QH2 718 aa14.17□□□□□ -0.14
PCDHA9-201ENST00000378122 SLC12A5Q9H2X9 1139 aa14.17□□□□□ -0.14
PCDHA9-201ENST00000378122 SART3Q15020 963 aaKnown RBP14.17□□□□□ -0.14
PCDHA9-201ENST00000378122 TMOD2Q9NZR1 351 aa14.17□□□□□ -0.14
PCDHA9-201ENST00000378122 TBC1D2BQ9UPU7 963 aa14.17□□□□□ -0.14
PCDHA9-201ENST00000378122 TSPYL1Q9H0U9 437 aa14.17□□□□□ -0.14
PCDHA9-201ENST00000378122 PPP6R1Q9UPN7 881 aa14.17□□□□□ -0.14
PCDHA9-201ENST00000378122 ME1P48163 572 aa14.16□□□□□ -0.14
PCDHA9-201ENST00000378122 HSPA2P54652 639 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms